PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371268	[[55446464, 55446753], [55451769, 55452119], [55457508, 55457966]]	[[55446738, 55446753], [55451769, 55452119], [55457508, 55457776]]
NM_182532	[[55446336, 55446753], [55451769, 55452119], [55457508, 55457966]]	[[55446738, 55446753], [55451769, 55452119], [55457508, 55457776]]

Promoter

Chrom	Start	End	Description
chr1	55446284	55446319	CAGE_peak_1_at_TMEM61_5end
chr1	55446323	55446350	CAGE_peak_2_at_TMEM61_5end
chr1	55446384	55446413	CAGE_peak_3_at_TMEM61_5end
chr1	55446510	55446545	CAGE_peak_4_at_TMEM61_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I055021	55021668	55022720	1.12	[{'connected_gene': 'PCSK9', 'score': 22.21}, {'connected_gene': 'TMEM61', 'score': 11.19}, {'connected_gene': 'GC01M055004', 'score': 0.37}, {'connected_gene': 'PIR32788', 'score': 0.37}]
chr1	GH01I055038	55038522	55041475	1.87	[{'connected_gene': 'PCSK9', 'score': 550.77}, {'connected_gene': 'TMEM61', 'score': 11.25}, {'connected_gene': 'GC01P055065', 'score': 0.31}]
chr1	GH01I055007	55007748	55007917	0.2	[{'connected_gene': 'TMEM61', 'score': 12.0}, {'connected_gene': 'GC01M055004', 'score': 0.44}, {'connected_gene': 'PIR32788', 'score': 0.44}, {'connected_gene': 'BSND', 'score': 0.44}, {'connected_gene': 'PCSK9', 'score': 0.29}]
chr1	GH01I055025	55025801	55026200	0.43	[{'connected_gene': 'TMEM61', 'score': 10.98}, {'connected_gene': 'PCSK9', 'score': 0.39}, {'connected_gene': 'GC01M055004', 'score': 0.34}, {'connected_gene': 'PIR32788', 'score': 0.34}]
chr1	GH01I055081	55081270	55081875	0.2	[{'connected_gene': 'TMEM61', 'score': 9.87}, {'connected_gene': 'GC01M055068', 'score': 0.39}, {'connected_gene': 'GC01M055067', 'score': 0.39}, {'connected_gene': 'GC01P055101', 'score': 0.34}, {'connected_gene': 'USP24', 'score': 0.12}]
chr1	GH01I055071	55071608	55071717	0.65	[{'connected_gene': 'TMEM61', 'score': 9.98}, {'connected_gene': 'GC01M055068', 'score': 0.44}, {'connected_gene': 'GC01M055067', 'score': 0.44}, {'connected_gene': 'GC01P055101', 'score': 0.29}, {'connected_gene': 'USP24', 'score': 0.11}]
chr1	GH01I054948	54948289	54948554	0.51	[{'connected_gene': 'TMEM61', 'score': 12.54}, {'connected_gene': 'ENSG00000233271', 'score': 12.48}, {'connected_gene': 'ENSG00000242396', 'score': 11.04}, {'connected_gene': 'DHCR24', 'score': 11.04}, {'connected_gene': 'ENSG00000233203', 'score': 11.04}, {'connected_gene': 'TTC22', 'score': 10.08}, {'connected_gene': 'ENSG00000237453', 'score': 10.07}, {'connected_gene': 'USP24', 'score': 1.25}, {'connected_gene': 'PIR41856', 'score': 0.77}, {'connected_gene': 'GC01M054958', 'score': 0.44}]
chr1	GH01I054939	54939665	54940807	0.43	[{'connected_gene': 'TMEM61', 'score': 24.19}, {'connected_gene': 'ENSG00000233271', 'score': 12.45}, {'connected_gene': 'ENSG00000242396', 'score': 10.7}, {'connected_gene': 'DHCR24', 'score': 10.7}, {'connected_gene': 'ENSG00000233203', 'score': 10.7}, {'connected_gene': 'TTC22', 'score': 10.08}, {'connected_gene': 'ENSG00000237453', 'score': 10.08}, {'connected_gene': 'GC01M054936', 'score': 0.77}, {'connected_gene': 'PIR41856', 'score': 0.44}]
chr1	GH01I054979	54979919	54980010	0.33	[{'connected_gene': 'TMEM61', 'score': 577.77}, {'connected_gene': 'LOC105378736', 'score': 550.77}, {'connected_gene': 'MROH7', 'score': 2.14}, {'connected_gene': 'LEXM', 'score': 1.89}, {'connected_gene': 'GC01P054966', 'score': 0.39}]
chr1	GH01I054980	54980400	54981001	1.29	[{'connected_gene': 'TMEM61', 'score': 563.94}, {'connected_gene': 'LOC105378736', 'score': 550.77}, {'connected_gene': 'ENSG00000233271', 'score': 0.39}]
chr1	GH01I054972	54972253	54974002	0.89	[{'connected_gene': 'TMEM61', 'score': 16.71}, {'connected_gene': 'LOC105378736', 'score': 0.44}, {'connected_gene': 'GC01P054966', 'score': 0.44}]
chr1	GH01I054970	54970626	54972177	1.11	[{'connected_gene': 'TMEM61', 'score': 17.63}, {'connected_gene': 'LOC105378736', 'score': 0.44}, {'connected_gene': 'GC01P054966', 'score': 0.44}]
chr1	GH01I054953	54953035	54953248	0.7	[{'connected_gene': 'TMEM61', 'score': 12.56}, {'connected_gene': 'GC01M054958', 'score': 0.77}, {'connected_gene': 'PIR41856', 'score': 0.44}]
chr1	GH01I054961	54961772	54963557	0.54	[{'connected_gene': 'TMEM61', 'score': 15.25}, {'connected_gene': 'GC01M054958', 'score': 0.77}, {'connected_gene': 'GC01P054966', 'score': 0.77}]
chr1	GH01I054955	54955326	54956359	0.46	[{'connected_gene': 'TMEM61', 'score': 17.56}, {'connected_gene': 'GC01M054958', 'score': 0.77}, {'connected_gene': 'PIR41856', 'score': 0.44}]
chr1	GH01I054949	54949967	54951522	1.06	[{'connected_gene': 'TMEM61', 'score': 24.63}, {'connected_gene': 'PIR41856', 'score': 0.77}, {'connected_gene': 'GC01M054958', 'score': 0.44}]
chr1	GH01I054950	54949172	54949365	0.5	[{'connected_gene': 'TMEM61', 'score': 12.54}, {'connected_gene': 'PIR41856', 'score': 0.77}, {'connected_gene': 'GC01M054958', 'score': 0.44}]
chr1	GH01I054926	54926637	54929194	0.78	[{'connected_gene': 'DHCR24', 'score': 16.77}, {'connected_gene': 'ENSG00000242396', 'score': 11.5}, {'connected_gene': 'ENSG00000233203', 'score': 11.5}, {'connected_gene': 'TMEM61', 'score': 11.19}, {'connected_gene': 'TTC22', 'score': 9.91}, {'connected_gene': 'ENSG00000237453', 'score': 9.9}, {'connected_gene': 'GC01P054924', 'score': 0.77}, {'connected_gene': 'GC01M054936', 'score': 0.44}]
chr1	GH01I054871	54871024	54872962	0.65	[{'connected_gene': 'ENSG00000233203', 'score': 11.55}, {'connected_gene': 'TTC22', 'score': 10.71}, {'connected_gene': 'TMEM61', 'score': 10.32}, {'connected_gene': 'ENSG00000237453', 'score': 10.28}, {'connected_gene': 'MROH7', 'score': 9.56}, {'connected_gene': 'LEXM', 'score': 5.15}, {'connected_gene': 'PIR36544', 'score': 0.77}, {'connected_gene': 'DHCR24', 'score': 0.37}, {'connected_gene': 'GC01P054854', 'score': 0.37}]
chr1	GH01I054945	54945002	54946175	1.16	[{'connected_gene': 'PIR41856', 'score': 550.77}, {'connected_gene': 'TMEM61', 'score': 23.52}, {'connected_gene': 'ENSG00000233271', 'score': 12.46}, {'connected_gene': 'ENSG00000242396', 'score': 10.69}, {'connected_gene': 'DHCR24', 'score': 10.69}, {'connected_gene': 'ENSG00000233203', 'score': 10.69}, {'connected_gene': 'TTC22', 'score': 10.08}, {'connected_gene': 'ENSG00000237453', 'score': 10.07}, {'connected_gene': 'USP24', 'score': 1.61}, {'connected_gene': 'GC01M054936', 'score': 0.44}]
chr1	GH01I054965	54965401	54966800	1.08	[{'connected_gene': 'GC01P054966', 'score': 550.77}, {'connected_gene': 'TMEM61', 'score': 6.93}, {'connected_gene': 'GC01M054958', 'score': 0.44}]
chr1	GH01I054882	54882271	54890116	2.29	[{'connected_gene': 'ENSG00000233203', 'score': 564.79}, {'connected_gene': 'DHCR24', 'score': 562.33}, {'connected_gene': 'ENSG00000242396', 'score': 550.77}, {'connected_gene': 'SSBP3-AS1', 'score': 23.2}, {'connected_gene': 'HSPB11', 'score': 14.4}, {'connected_gene': 'ENSG00000279049', 'score': 12.58}, {'connected_gene': 'TMEM61', 'score': 10.71}, {'connected_gene': 'TTC22', 'score': 10.62}, {'connected_gene': 'PARS2', 'score': 10.52}, {'connected_gene': 'LRRC42', 'score': 10.5}, {'connected_gene': 'ENSG00000237453', 'score': 10.04}, {'connected_gene': 'TTC4', 'score': 9.99}, {'connected_gene': 'LEXM', 'score': 5.27}, {'connected_gene': 'PIR36544', 'score': 0.39}]
chr1	GH01I054864	54864880	54868308	1.11	[{'connected_gene': 'ENSG00000233203', 'score': 21.5}, {'connected_gene': 'DHCR24', 'score': 19.7}, {'connected_gene': 'ENSG00000242396', 'score': 11.81}, {'connected_gene': 'TTC22', 'score': 10.31}, {'connected_gene': 'ENSG00000237453', 'score': 10.29}, {'connected_gene': 'LEXM', 'score': 5.8}, {'connected_gene': 'TMEM61', 'score': 5.22}, {'connected_gene': 'PIR36544', 'score': 0.44}, {'connected_gene': 'GC01P054854', 'score': 0.39}]
chr1	GH01I054923	54923057	54923670	0.66	[{'connected_gene': 'GC01P054925', 'score': 550.77}, {'connected_gene': 'GC01P054924', 'score': 550.77}, {'connected_gene': 'DHCR24', 'score': 19.8}, {'connected_gene': 'ENSG00000242396', 'score': 11.52}, {'connected_gene': 'ENSG00000233203', 'score': 11.52}, {'connected_gene': 'TMEM61', 'score': 10.93}, {'connected_gene': 'TTC22', 'score': 9.91}, {'connected_gene': 'ENSG00000237453', 'score': 9.9}, {'connected_gene': 'GC01P054911', 'score': 0.39}]
chr1	GH01I054934	54934093	54935672	1.11	[{'connected_gene': 'GC01M054936', 'score': 550.77}, {'connected_gene': 'DHCR24', 'score': 16.12}, {'connected_gene': 'TMEM61', 'score': 11.39}, {'connected_gene': 'ENSG00000242396', 'score': 10.67}, {'connected_gene': 'ENSG00000233203', 'score': 10.67}, {'connected_gene': 'GC01P054924', 'score': 0.39}]
chr1	GH01I054856	54856102	54863609	1.37	[{'connected_gene': 'ENSG00000233203', 'score': 21.3}, {'connected_gene': 'DHCR24', 'score': 19.24}, {'connected_gene': 'LEXM', 'score': 18.32}, {'connected_gene': 'ENSG00000242396', 'score': 11.78}, {'connected_gene': 'TTC22', 'score': 10.08}, {'connected_gene': 'ENSG00000237453', 'score': 9.99}, {'connected_gene': 'LDLRAD1', 'score': 9.33}, {'connected_gene': 'TCEANC2', 'score': 8.86}, {'connected_gene': 'TMEM59', 'score': 8.86}, {'connected_gene': 'TMEM61', 'score': 5.9}, {'connected_gene': 'GC01P054854', 'score': 0.44}, {'connected_gene': 'PIR36544', 'score': 0.37}]