PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000335390	[[62727355, 62728622], [62729571, 62729685], [62729825, 62729929], [62733164, 62733476]]	[[62728343, 62728622], [62729571, 62729685], [62729825, 62729929], [62733164, 62733264]]
ENST00000479763	[[62727761, 62729685], [62729825, 62729929], [62738921, 62739029]]	None
ENST00000494919	[[62727769, 62729685], [62729825, 62729929], [62733164, 62733604]]	None
NM_198276	[[62727355, 62728622], [62729571, 62729685], [62729825, 62729929], [62733164, 62733604]]	[[62728343, 62728622], [62729571, 62729685], [62729825, 62729929], [62733164, 62733264]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I062467	62467201	62468201	0.69	[{'connected_gene': 'EHBP1', 'score': 10.13}, {'connected_gene': 'TMEM17', 'score': 5.67}, {'connected_gene': 'ENSG00000228541', 'score': 0.77}, {'connected_gene': 'GC02P062494', 'score': 0.34}]
chr2	GH02I062450	62450906	62451015	0.84	[{'connected_gene': 'EHBP1', 'score': 10.09}, {'connected_gene': 'ENSG00000226622', 'score': 9.86}, {'connected_gene': 'CCT4', 'score': 9.43}, {'connected_gene': 'COMMD1', 'score': 9.43}, {'connected_gene': 'ENSG00000228541', 'score': 0.39}, {'connected_gene': 'TMEM17', 'score': 0.21}, {'connected_gene': 'GC02M062385', 'score': 0.2}]
chr2	GH02I062464	62464766	62466937	0.65	[{'connected_gene': 'TMEM17', 'score': 17.37}, {'connected_gene': 'USP34', 'score': 13.0}, {'connected_gene': 'XPO1', 'score': 12.71}, {'connected_gene': 'CCT4', 'score': 12.39}, {'connected_gene': 'RPL37P13', 'score': 11.57}, {'connected_gene': 'ENSG00000236498', 'score': 11.21}, {'connected_gene': 'ENSG00000226622', 'score': 10.38}, {'connected_gene': 'EHBP1', 'score': 10.35}, {'connected_gene': 'ENSG00000228541', 'score': 0.77}, {'connected_gene': 'GC02P062494', 'score': 0.31}]
chr2	GH02I062504	62504942	62507226	2.01	[{'connected_gene': 'TMEM17', 'score': 559.47}, {'connected_gene': 'RPL37P13', 'score': 550.77}, {'connected_gene': 'XPO1', 'score': 22.43}, {'connected_gene': 'ENSG00000226622', 'score': 15.97}, {'connected_gene': 'CCT4', 'score': 12.39}, {'connected_gene': 'ENSG00000236498', 'score': 11.21}, {'connected_gene': 'EHBP1', 'score': 10.17}, {'connected_gene': 'LOC100132215', 'score': 4.8}, {'connected_gene': 'OTX1', 'score': 4.65}, {'connected_gene': 'RN7SL18P', 'score': 0.39}]
chr2	GH02I062589	62589806	62589955	0.63	[{'connected_gene': 'TMEM17', 'score': 11.1}, {'connected_gene': 'RPL37P13', 'score': 11.09}, {'connected_gene': 'ENSG00000226622', 'score': 10.63}, {'connected_gene': 'OTX1', 'score': 6.93}, {'connected_gene': 'CCT4', 'score': 4.28}, {'connected_gene': 'GC02M062561', 'score': 0.31}, {'connected_gene': 'RSL24D1P2', 'score': 0.31}]
chr2	GH02I062473	62473453	62478895	1	[{'connected_gene': 'TMEM17', 'score': 17.15}, {'connected_gene': 'RPL37P13', 'score': 11.42}, {'connected_gene': 'ENSG00000226622', 'score': 10.28}, {'connected_gene': 'EHBP1', 'score': 10.25}, {'connected_gene': 'CCT4', 'score': 9.33}, {'connected_gene': 'COMMD1', 'score': 9.33}, {'connected_gene': 'ENSG00000228541', 'score': 0.39}, {'connected_gene': 'GC02P062494', 'score': 0.37}]
chr2	GH02I062538	62538738	62541783	0.87	[{'connected_gene': 'TMEM17', 'score': 11.42}, {'connected_gene': 'RPL37P13', 'score': 11.4}, {'connected_gene': 'EHBP1', 'score': 10.7}, {'connected_gene': 'ENSG00000226622', 'score': 10.63}, {'connected_gene': 'LOC100132215', 'score': 4.55}, {'connected_gene': 'RPL21P37', 'score': 0.44}, {'connected_gene': 'PSAT1P2', 'score': 0.39}]
chr2	GH02I062471	62471478	62472989	0.38	[{'connected_gene': 'TMEM17', 'score': 17.27}, {'connected_gene': 'RPL37P13', 'score': 11.4}, {'connected_gene': 'EHBP1', 'score': 9.96}, {'connected_gene': 'ENSG00000228541', 'score': 0.44}, {'connected_gene': 'GC02P062494', 'score': 0.37}]
chr2	GH02I062297	62295746	62297795	1.15	[{'connected_gene': 'B3GNT2', 'score': 25.71}, {'connected_gene': 'ENSG00000236498', 'score': 10.57}, {'connected_gene': 'TMEM17', 'score': 4.73}, {'connected_gene': 'LOC105374761', 'score': 0.29}, {'connected_gene': 'GC02M062151', 'score': 0.28}]
chr2	GH02I062488	62488865	62489895	0.76	[{'connected_gene': 'RN7SL18P', 'score': 550.77}, {'connected_gene': 'GC02P062494', 'score': 550.77}, {'connected_gene': 'TMEM17', 'score': 11.38}, {'connected_gene': 'ENSG00000226622', 'score': 9.58}, {'connected_gene': 'EHBP1', 'score': 9.54}, {'connected_gene': 'OTX1', 'score': 4.28}, {'connected_gene': 'LOC100132215', 'score': 3.98}, {'connected_gene': 'ENSG00000228541', 'score': 0.31}]
chr2	GH02I062409	62409602	62412815	1.09	[{'connected_gene': 'CCT4', 'score': 20.85}, {'connected_gene': 'COMMD1', 'score': 10.92}, {'connected_gene': 'USP34', 'score': 10.04}, {'connected_gene': 'TMEM17', 'score': 5.14}, {'connected_gene': 'GC02M062385', 'score': 0.31}, {'connected_gene': 'ENSG00000228541', 'score': 0.23}]
chr2	GH02I062456	62456532	62459850	1.19	[{'connected_gene': 'RPL37P13', 'score': 11.56}, {'connected_gene': 'TMEM17', 'score': 11.54}, {'connected_gene': 'ENSG00000226622', 'score': 10.38}, {'connected_gene': 'EHBP1', 'score': 10.35}, {'connected_gene': 'ENSG00000228541', 'score': 0.77}, {'connected_gene': 'GC02M062385', 'score': 0.19}]
chr2	GH02I062719	62719764	62722107	0.31	[{'connected_gene': 'ENSG00000226622', 'score': 18.33}, {'connected_gene': 'EHBP1', 'score': 11.0}, {'connected_gene': 'TMEM17', 'score': 10.61}, {'connected_gene': 'RPL37P13', 'score': 10.61}, {'connected_gene': 'ENSG00000252436', 'score': 0.44}]
chr2	GH02I062500	62500830	62502647	0.68	[{'connected_gene': 'ENSG00000226622', 'score': 14.43}, {'connected_gene': 'TMEM17', 'score': 7.64}, {'connected_gene': 'RPL37P13', 'score': 0.44}, {'connected_gene': 'RN7SL18P', 'score': 0.39}]
chr2	GH02I062485	62485467	62487350	0.98	[{'connected_gene': 'ENSG00000226622', 'score': 10.04}, {'connected_gene': 'TMEM17', 'score': 7.54}, {'connected_gene': 'LOC100132215', 'score': 4.55}, {'connected_gene': 'GC02P062494', 'score': 0.77}, {'connected_gene': 'ENSG00000228541', 'score': 0.34}]
chr2	GH02I062526	62526561	62526675	0.99	[{'connected_gene': 'ENSG00000226622', 'score': 10.76}, {'connected_gene': 'GC02P062531', 'score': 0.44}, {'connected_gene': 'TMEM17', 'score': 0.39}]