PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000453168	[[31574129, 31574804], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661277, 31661322], [31661456, 31661766]]	None
ENST00000295770	[[31574281, 31574804], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661167, 31661322], [31663588, 31663800], [31665165, 31665353], [31666405, 31666577], [31667445, 31667619], [31670789, 31670903], [31674426, 31674639], [31677475, 31679112]]	[[31574490, 31574804], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661167, 31661322], [31663588, 31663800], [31665165, 31665353], [31666405, 31666577], [31667445, 31667619], [31670789, 31670903], [31674426, 31674639], [31677475, 31677556]]
ENST00000423527	[[31574463, 31574804], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661167, 31661322], [31661456, 31661766]]	None
ENST00000462235	[[31575116, 31575178], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658497]]	None
ENST00000436236	[[31638297, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661167, 31661788]]	None
ENST00000463044	[[31667552, 31667619], [31670789, 31670903], [31674426, 31674676], [31677475, 31677956]]	None
ENST00000488151	[[31670742, 31670903], [31674426, 31674639], [31677475, 31677537]]	None
NM_178862	[[31573992, 31574804], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661167, 31661322], [31663588, 31663800], [31665165, 31665353], [31666405, 31666577], [31667445, 31667619], [31670789, 31670903], [31674426, 31674639], [31677475, 31679114]]	[[31574490, 31574804], [31617887, 31617996], [31621300, 31621588], [31638289, 31638355], [31641851, 31641951], [31656596, 31656695], [31658420, 31658567], [31659431, 31659480], [31661167, 31661322], [31663588, 31663800], [31665165, 31665353], [31666405, 31666577], [31667445, 31667619], [31670789, 31670903], [31674426, 31674639], [31677475, 31677556]]

Promoter

Chrom	Start	End	Description
chr3	31573628	31573666	CAGE_peak_9_at_STT3B_5end
chr3	31574008	31574019	CAGE_peak_8_at_STT3B_5end
chr3	31574036	31574045	CAGE_peak_12_at_STT3B_5end
chr3	31574066	31574107	CAGE_peak_3_at_STT3B_5end
chr3	31574110	31574146	CAGE_peak_4_at_STT3B_5end
chr3	31574148	31574159	CAGE_peak_7_at_STT3B_5end
chr3	31574189	31574200	CAGE_peak_6_at_STT3B_5end
chr3	31574393	31574447	CAGE_peak_1_at_STT3B_5end
chr3	31574452	31574476	CAGE_peak_2_at_STT3B_5end
chr3	31574480	31574491	CAGE_peak_5_at_STT3B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I032121	32121001	32121200	0.62	[{'connected_gene': 'GLB1', 'score': 12.23}, {'connected_gene': 'TMPPE', 'score': 11.78}, {'connected_gene': 'CNOT10', 'score': 10.96}, {'connected_gene': 'STT3B', 'score': 10.63}, {'connected_gene': 'ENSG00000236732', 'score': 10.21}, {'connected_gene': 'GPD1L', 'score': 6.72}, {'connected_gene': 'GC03M031988', 'score': 0.06}]
chr3	GH03I031444	31444071	31445776	0.56	[{'connected_gene': 'STT3B', 'score': 16.15}, {'connected_gene': 'THRAP3P1', 'score': 0.44}, {'connected_gene': 'GC03M031421', 'score': 0.37}]
chr3	GH03I031443	31443778	31443842	0.2	[{'connected_gene': 'STT3B', 'score': 10.41}, {'connected_gene': 'THRAP3P1', 'score': 0.44}, {'connected_gene': 'GC03M031421', 'score': 0.37}]
chr3	GH03I031445	31445829	31445978	0.52	[{'connected_gene': 'STT3B', 'score': 10.59}, {'connected_gene': 'THRAP3P1', 'score': 0.44}, {'connected_gene': 'GC03M031421', 'score': 0.37}]
chr3	GH03I031490	31490604	31491044	0.43	[{'connected_gene': 'STT3B', 'score': 7.13}, {'connected_gene': 'LOC105377019', 'score': 0.31}, {'connected_gene': 'GC03P031518', 'score': 0.31}, {'connected_gene': 'GC03M031490', 'score': 0.29}]
chr3	GH03I031504	31504949	31507355	0.6	[{'connected_gene': 'STT3B', 'score': 11.71}, {'connected_gene': 'GC03P031518', 'score': 0.39}, {'connected_gene': 'GC03M031490', 'score': 0.37}, {'connected_gene': 'LOC105377019', 'score': 0.26}]
chr3	GH03I031486	31486819	31487424	0.86	[{'connected_gene': 'STT3B', 'score': 17.75}, {'connected_gene': 'LOC105377019', 'score': 0.34}, {'connected_gene': 'GC03P031518', 'score': 0.29}]
chr3	GH03I030619	30619351	30651144	1.39	[{'connected_gene': 'STT3B', 'score': 10.63}, {'connected_gene': 'ENSG00000224618', 'score': 0.44}, {'connected_gene': 'LOC105377016', 'score': 0.37}, {'connected_gene': 'TGFBR2', 'score': 0.31}, {'connected_gene': 'GC03M030649', 'score': 0.26}]
chr3	GH03I031221	31221496	31223285	0.2	[{'connected_gene': 'STT3B', 'score': 10.85}, {'connected_gene': 'RNA5SP127', 'score': 0.44}, {'connected_gene': 'LOC105377018', 'score': 0.37}]
chr3	GH03I031231	31231668	31233794	1.03	[{'connected_gene': 'STT3B', 'score': 10.77}, {'connected_gene': 'RNA5SP127', 'score': 0.77}, {'connected_gene': 'GC03P031244', 'score': 0.39}]
chr3	GH03I031234	31234717	31235841	0.58	[{'connected_gene': 'STT3B', 'score': 10.77}, {'connected_gene': 'RNA5SP127', 'score': 0.44}, {'connected_gene': 'GC03P031244', 'score': 0.44}]
chr3	GH03I031235	31234200	31234538	0.83	[{'connected_gene': 'STT3B', 'score': 10.77}, {'connected_gene': 'RNA5SP127', 'score': 0.44}, {'connected_gene': 'GC03P031244', 'score': 0.44}]
chr3	GH03I031232	31231001	31231200	0.51	[{'connected_gene': 'STT3B', 'score': 10.77}, {'connected_gene': 'RNA5SP127', 'score': 0.77}, {'connected_gene': 'GC03P031244', 'score': 0.39}]
chr3	GH03I031165	31165209	31167472	1.31	[{'connected_gene': 'STT3B', 'score': 1.37}, {'connected_gene': 'MIR466', 'score': 0.77}, {'connected_gene': 'CNN2P6', 'score': 0.37}]
chr3	GH03I031538	31538815	31540953	0.46	[{'connected_gene': 'STT3B', 'score': 5.16}, {'connected_gene': 'GC03M031530', 'score': 0.44}, {'connected_gene': 'GC03P031521', 'score': 0.37}, {'connected_gene': 'GC03M031604', 'score': 0.18}]
chr3	GH03I031423	31423045	31424360	0.72	[{'connected_gene': 'STT3B', 'score': 10.85}, {'connected_gene': 'GC03M031421', 'score': 0.77}, {'connected_gene': 'GC03M031400', 'score': 0.37}]
chr3	GH03I031370	31370929	31371078	0.64	[{'connected_gene': 'STT3B', 'score': 10.23}, {'connected_gene': 'GC03M031394', 'score': 0.34}, {'connected_gene': 'ENSG00000230111', 'score': 0.15}]
chr3	GH03I031371	31370709	31370858	0.62	[{'connected_gene': 'STT3B', 'score': 10.23}, {'connected_gene': 'GC03M031394', 'score': 0.34}, {'connected_gene': 'ENSG00000230111', 'score': 0.15}]
chr3	GH03I031564	31564606	31567466	0.72	[{'connected_gene': 'STT3B', 'score': 11.73}, {'connected_gene': 'GC03M031530', 'score': 0.29}, {'connected_gene': 'GC03M031604', 'score': 0.23}]
chr3	GH03I031572	31572219	31574455	0.38	[{'connected_gene': 'STT3B', 'score': 11.46}, {'connected_gene': 'GC03M031530', 'score': 0.26}, {'connected_gene': 'GC03M031604', 'score': 0.25}]
chr3	GH03I031581	31581298	31583204	0.2	[{'connected_gene': 'STT3B', 'score': 11.57}, {'connected_gene': 'GC03M031604', 'score': 0.28}, {'connected_gene': 'GC03M031530', 'score': 0.25}]
chr3	GH03I031528	31528390	31529136	0.2	[{'connected_gene': 'STT3B', 'score': 0.77}, {'connected_gene': 'GC03P031521', 'score': 0.44}, {'connected_gene': 'GC03M031490', 'score': 0.44}]
chr3	GH03I031273	31273840	31276309	1.25	[{'connected_gene': 'STT3B', 'score': 10.18}, {'connected_gene': 'ENSG00000230111', 'score': 0.44}, {'connected_gene': 'GC03P031244', 'score': 0.29}, {'connected_gene': 'GC03M031394', 'score': 0.13}]
chr3	GH03I031535	31535597	31538020	0.59	[{'connected_gene': 'STT3B', 'score': 5.41}, {'connected_gene': 'GC03M031530', 'score': 0.77}, {'connected_gene': 'GC03P031521', 'score': 0.39}, {'connected_gene': 'GC03M031604', 'score': 0.18}]
chr3	GH03I031592	31592251	31593620	0.81	[{'connected_gene': 'STT3B', 'score': 10.84}, {'connected_gene': 'GC03M031604', 'score': 0.31}, {'connected_gene': 'GC03M031530', 'score': 0.21}]
chr3	GH03I031461	31461525	31463455	0.95	[{'connected_gene': 'LOC105377019', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 17.77}, {'connected_gene': 'THRAP3P1', 'score': 0.44}]
chr3	GH03I031594	31594542	31596688	0.2	[{'connected_gene': 'OSBPL10-AS1', 'score': 10.74}, {'connected_gene': 'OSBPL10', 'score': 10.64}, {'connected_gene': 'GC03M031604', 'score': 0.31}, {'connected_gene': 'GC03M031530', 'score': 0.21}, {'connected_gene': 'STT3B', 'score': 0.21}]
chr3	GH03I031224	31224517	31229622	1.33	[{'connected_gene': 'RNA5SP127', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 12.98}, {'connected_gene': 'LOC105377018', 'score': 0.34}]
chr3	GH03I031230	31230259	31230823	0.77	[{'connected_gene': 'RNA5SP127', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 10.77}, {'connected_gene': 'GC03P031244', 'score': 0.39}]
chr3	GH03I031530	31530334	31535401	2.31	[{'connected_gene': 'GC03M031530', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 550.77}, {'connected_gene': 'ZNF860', 'score': 10.0}, {'connected_gene': 'CMTM6', 'score': 9.75}, {'connected_gene': 'GC03P031521', 'score': 0.39}, {'connected_gene': 'GC03M031604', 'score': 0.17}]
chr3	GH03I031543	31543474	31543867	0.65	[{'connected_gene': 'GC03M031530', 'score': 0.39}, {'connected_gene': 'STT3B', 'score': 0.39}, {'connected_gene': 'GC03P031521', 'score': 0.34}, {'connected_gene': 'GC03M031604', 'score': 0.18}]
chr3	GH03I031270	31270215	31271794	0.59	[{'connected_gene': 'ENSG00000230111', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 10.67}, {'connected_gene': 'ENSG00000236732', 'score': 9.94}, {'connected_gene': 'GC03P031244', 'score': 0.31}, {'connected_gene': 'GC03M031394', 'score': 0.13}]
chr3	GH03I031541	31541189	31541338	0.63	[{'connected_gene': 'GC03M031530', 'score': 0.44}, {'connected_gene': 'STT3B', 'score': 0.44}, {'connected_gene': 'GC03P031521', 'score': 0.37}, {'connected_gene': 'GC03M031604', 'score': 0.18}]
chr3	GH03I031634	31634248	31637806	0.63	[{'connected_gene': 'PIR58590', 'score': 0.37}, {'connected_gene': 'GC03M031604', 'score': 0.37}, {'connected_gene': 'STT3B', 'score': 0.15}]
chr3	GH03I031563	31562201	31562400	0.2	[{'connected_gene': 'GC03M031530', 'score': 0.31}, {'connected_gene': 'STT3B', 'score': 0.31}, {'connected_gene': 'GC03M031604', 'score': 0.22}]
chr3	GH03I031142	31142229	31143094	0.31	[{'connected_gene': 'GC03P031143', 'score': 550.77}, {'connected_gene': 'GC03P031144', 'score': 550.77}, {'connected_gene': 'STT3B', 'score': 9.8}, {'connected_gene': 'GC03P031137', 'score': 0.77}]
chr3	GH03I031551	31551328	31552376	0.46	[{'connected_gene': 'GC03M031530', 'score': 0.37}, {'connected_gene': 'STT3B', 'score': 0.37}, {'connected_gene': 'GC03M031604', 'score': 0.2}]
chr3	GH03I031565	31563801	31564000	0.2	[{'connected_gene': 'GC03M031530', 'score': 0.29}, {'connected_gene': 'STT3B', 'score': 0.29}, {'connected_gene': 'GC03M031604', 'score': 0.22}]
chr3	GH03I031544	31544499	31545199	1	[{'connected_gene': 'GC03M031530', 'score': 0.39}, {'connected_gene': 'STT3B', 'score': 0.39}, {'connected_gene': 'GC03M031604', 'score': 0.18}]
chr3	GH03I031546	31546924	31548223	0.94	[{'connected_gene': 'GC03M031530', 'score': 0.39}, {'connected_gene': 'STT3B', 'score': 0.37}, {'connected_gene': 'GC03M031604', 'score': 0.19}]
chr3	GH03I031545	31545401	31546800	0.63	[{'connected_gene': 'GC03M031530', 'score': 0.39}, {'connected_gene': 'STT3B', 'score': 0.39}, {'connected_gene': 'GC03M031604', 'score': 0.19}]
chr3	GH03I031550	31550809	31550958	0.74	[{'connected_gene': 'GC03M031530', 'score': 0.37}, {'connected_gene': 'STT3B', 'score': 0.37}, {'connected_gene': 'GC03M031604', 'score': 0.19}]
chr3	GH03I031562	31562589	31562798	0.46	[{'connected_gene': 'GC03M031530', 'score': 0.31}, {'connected_gene': 'STT3B', 'score': 0.29}, {'connected_gene': 'GC03M031604', 'score': 0.22}]