PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000273861	[[48485359, 48486168], [48486948, 48487159], [48490443, 48491213]]	[[48485578, 48486168], [48486948, 48487159], [48490443, 48490956]]
NM_152679	[[48485359, 48486168], [48486948, 48487159], [48490443, 48491541]]	[[48485578, 48486168], [48486948, 48487159], [48490443, 48490956]]

Promoter

Chrom	Start	End	Description
chr4	48485147	48485178	CAGE_peak_6_at_SLC10A4_5end
chr4	48485220	48485230	CAGE_peak_10_at_SLC10A4_5end
chr4	48485239	48485249	CAGE_peak_9_at_SLC10A4_5end
chr4	48485341	48485394	CAGE_peak_1_at_SLC10A4_5end
chr4	48485400	48485411	CAGE_peak_3_at_SLC10A4_5end
chr4	48485413	48485423	CAGE_peak_5_at_SLC10A4_5end
chr4	48485436	48485441	CAGE_peak_12_at_SLC10A4_5end
chr4	48485486	48485499	CAGE_peak_2_at_SLC10A4_5end
chr4	48485501	48485512	CAGE_peak_7_at_SLC10A4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I048260	48260879	48262210	0.43	[{'connected_gene': 'TXK', 'score': 10.61}, {'connected_gene': 'SLAIN2', 'score': 4.94}, {'connected_gene': 'OCIAD1', 'score': 4.62}, {'connected_gene': 'SLC10A4', 'score': 4.52}, {'connected_gene': 'TEC', 'score': 0.44}, {'connected_gene': 'GC04M048219', 'score': 0.26}]
chr4	GH04I048263	48263000	48263201	0.51	[{'connected_gene': 'TXK', 'score': 10.43}, {'connected_gene': 'SLC10A4', 'score': 4.52}, {'connected_gene': 'TEC', 'score': 0.44}, {'connected_gene': 'GC04M048219', 'score': 0.26}]
chr4	GH04I048380	48380402	48381200	0.38	[{'connected_gene': 'SLAIN2', 'score': 7.73}, {'connected_gene': 'GC04M048339', 'score': 0.28}, {'connected_gene': 'SLC10A4', 'score': 0.15}]
chr4	GH04I048336	48336820	48343753	2.26	[{'connected_gene': 'SLAIN2', 'score': 558.19}, {'connected_gene': 'TEC', 'score': 14.14}, {'connected_gene': 'ZAR1', 'score': 10.32}, {'connected_gene': 'TXK', 'score': 10.06}, {'connected_gene': 'SLC10A4', 'score': 5.85}, {'connected_gene': 'GC04M048339', 'score': 0.77}, {'connected_gene': 'GC04M048291', 'score': 0.28}]
chr4	GH04I048697	48697412	48701886	1.33	[{'connected_gene': 'OCIAD1', 'score': 12.14}, {'connected_gene': 'SLC10A4', 'score': 6.29}, {'connected_gene': 'CWH43', 'score': 3.92}, {'connected_gene': 'GC04P048658', 'score': 0.26}, {'connected_gene': 'FRYL', 'score': 0.18}]
chr4	GH04I048663	48663952	48670228	0.82	[{'connected_gene': 'OCIAD1', 'score': 7.91}, {'connected_gene': 'SLC10A4', 'score': 6.72}, {'connected_gene': 'GC04P048658', 'score': 0.44}, {'connected_gene': 'FRYL', 'score': 0.14}]
chr4	GH04I048728	48728784	48729884	0.77	[{'connected_gene': 'OCIAD1', 'score': 12.98}, {'connected_gene': 'SLC10A4', 'score': 4.04}, {'connected_gene': 'FRYL', 'score': 0.23}, {'connected_gene': 'GC04P048658', 'score': 0.19}]
chr4	GH04I048783	48783548	48789537	0.6	[{'connected_gene': 'OCIAD1', 'score': 12.57}, {'connected_gene': 'SLC10A4', 'score': 6.34}, {'connected_gene': 'FRYL', 'score': 0.44}]
chr4	GH04I048746	48746107	48747413	0.38	[{'connected_gene': 'OCIAD1', 'score': 8.19}, {'connected_gene': 'SLC10A4', 'score': 6.28}, {'connected_gene': 'FRYL', 'score': 0.29}, {'connected_gene': 'GC04P048658', 'score': 0.17}]
chr4	GH04I048898	48898700	48900464	0.95	[{'connected_gene': 'OCIAD1', 'score': 8.11}, {'connected_gene': 'SLC10A4', 'score': 4.92}, {'connected_gene': 'OCIAD2', 'score': 0.44}, {'connected_gene': 'OCIAD1-AS1', 'score': 0.28}, {'connected_gene': 'GC04M048853', 'score': 0.23}]
chr4	GH04I048683	48683626	48685033	1.16	[{'connected_gene': 'OCIAD1', 'score': 7.86}, {'connected_gene': 'SLC10A4', 'score': 6.29}, {'connected_gene': 'CNGA1', 'score': 4.37}, {'connected_gene': 'GC04P048658', 'score': 0.31}, {'connected_gene': 'FRYL', 'score': 0.15}]
chr4	GH04I048638	48638739	48643991	0.38	[{'connected_gene': 'OCIAD1', 'score': 20.14}, {'connected_gene': 'SLC10A4', 'score': 6.12}, {'connected_gene': 'GC04P048658', 'score': 0.37}, {'connected_gene': 'RNU5E-3P', 'score': 0.2}, {'connected_gene': 'FRYL', 'score': 0.12}]
chr4	GH04I048645	48645141	48649296	0.38	[{'connected_gene': 'OCIAD1', 'score': 22.97}, {'connected_gene': 'SLC10A4', 'score': 6.31}, {'connected_gene': 'GC04P048658', 'score': 0.39}, {'connected_gene': 'RNU5E-3P', 'score': 0.19}, {'connected_gene': 'FRYL', 'score': 0.12}]
chr4	GH04I048725	48725588	48727660	1.28	[{'connected_gene': 'OCIAD1', 'score': 23.02}, {'connected_gene': 'NFXL1', 'score': 4.99}, {'connected_gene': 'SLC10A4', 'score': 4.94}, {'connected_gene': 'FRYL', 'score': 0.23}, {'connected_gene': 'GC04P048658', 'score': 0.2}]
chr4	GH04I048756	48756801	48757000	0.31	[{'connected_gene': 'OCIAD1', 'score': 13.02}, {'connected_gene': 'OCIAD1-AS1', 'score': 10.18}, {'connected_gene': 'SLC10A4', 'score': 5.62}, {'connected_gene': 'FRYL', 'score': 0.34}, {'connected_gene': 'GC04P048658', 'score': 0.15}]
chr4	GH04I048629	48629086	48632096	0.74	[{'connected_gene': 'OCIAD1', 'score': 12.73}, {'connected_gene': 'OCIAD1-AS1', 'score': 10.23}, {'connected_gene': 'SLC10A4', 'score': 5.33}, {'connected_gene': 'NFXL1', 'score': 4.9}, {'connected_gene': 'GC04P048658', 'score': 0.31}, {'connected_gene': 'RNU5E-3P', 'score': 0.22}, {'connected_gene': 'FRYL', 'score': 0.11}]
chr4	GH04I048489	48489523	48491649	0.96	[{'connected_gene': 'ZAR1', 'score': 550.77}, {'connected_gene': 'OCIAD1', 'score': 12.57}, {'connected_gene': 'SLC10A4', 'score': 8.27}, {'connected_gene': 'ENSG00000259959', 'score': 5.37}, {'connected_gene': 'RNU5E-3P', 'score': 0.18}]
chr4	GH04I048775	48775018	48781849	2.44	[{'connected_gene': 'FRYL', 'score': 550.77}, {'connected_gene': 'OCIAD1', 'score': 24.27}, {'connected_gene': 'SLAIN2', 'score': 23.64}, {'connected_gene': 'NFXL1', 'score': 16.75}, {'connected_gene': 'TEC', 'score': 10.76}, {'connected_gene': 'SLC10A4', 'score': 6.27}, {'connected_gene': 'GC04P048658', 'score': 0.13}]
chr4	GH04I048359	48359661	48361843	0.69	[{'connected_gene': 'SLC10A4', 'score': 8.84}, {'connected_gene': 'SLAIN2', 'score': 7.78}, {'connected_gene': 'COMMD8', 'score': 4.6}, {'connected_gene': 'GC04M048339', 'score': 0.37}]
chr4	GH04I048375	48375311	48376693	1.03	[{'connected_gene': 'SLC10A4', 'score': 8.97}, {'connected_gene': 'SLAIN2', 'score': 0.29}, {'connected_gene': 'GC04M048339', 'score': 0.29}]
chr4	GH04I048654	48654401	48654600	0.74	[{'connected_gene': 'SLC10A4', 'score': 6.05}, {'connected_gene': 'GC04P048658', 'score': 0.77}, {'connected_gene': 'RNU5E-3P', 'score': 0.18}, {'connected_gene': 'FRYL', 'score': 0.13}]
chr4	GH04I048650	48650290	48651285	0.46	[{'connected_gene': 'SLC10A4', 'score': 7.82}, {'connected_gene': 'GC04P048658', 'score': 0.44}, {'connected_gene': 'RNU5E-3P', 'score': 0.18}, {'connected_gene': 'FRYL', 'score': 0.13}]
chr4	GH04I048483	48483306	48483365	0.99	[{'connected_gene': 'SLC10A4', 'score': 550.77}, {'connected_gene': 'GC04M048339', 'score': 0.11}]
chr4	GH04I048600	48600905	48605478	0.62	[{'connected_gene': 'RNU5E-3P', 'score': 12.89}, {'connected_gene': 'FRYL', 'score': 12.67}, {'connected_gene': 'OCIAD1', 'score': 12.56}, {'connected_gene': 'OCIAD1-AS1', 'score': 10.27}, {'connected_gene': 'SLC10A4', 'score': 6.77}, {'connected_gene': 'NFXL1', 'score': 4.91}, {'connected_gene': 'GC04P048658', 'score': 0.22}]
chr4	GH04I048632	48632724	48634531	0.31	[{'connected_gene': 'OCIAD1-AS1', 'score': 10.23}, {'connected_gene': 'OCIAD1', 'score': 7.47}, {'connected_gene': 'SLC10A4', 'score': 6.11}, {'connected_gene': 'GC04P048658', 'score': 0.31}, {'connected_gene': 'RNU5E-3P', 'score': 0.22}, {'connected_gene': 'FRYL', 'score': 0.11}]
chr4	GH04I048316	48316001	48316401	0.99	[{'connected_gene': 'TEC', 'score': 11.21}, {'connected_gene': 'ZAR1', 'score': 10.83}, {'connected_gene': 'TXK', 'score': 10.62}, {'connected_gene': 'SLC10A4', 'score': 4.56}, {'connected_gene': 'GC04M048291', 'score': 0.39}, {'connected_gene': 'SLAIN2', 'score': 0.31}]
chr4	GH04I048329	48329276	48333711	1.03	[{'connected_gene': 'TEC', 'score': 14.57}, {'connected_gene': 'NFXL1', 'score': 11.99}, {'connected_gene': 'TXK', 'score': 10.67}, {'connected_gene': 'RNU6-838P', 'score': 9.83}, {'connected_gene': 'SLC10A4', 'score': 6.04}, {'connected_gene': 'SLAIN2', 'score': 4.78}, {'connected_gene': 'GC04M048291', 'score': 0.31}]