PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000446378	[[78985699, 78985879], [79024737, 79035226], [79039649, 79039745], [79041044, 79041278], [79042913, 79042936], [79048498, 79048617], [79054575, 79054725], [79057633, 79057780], [79058884, 79059032], [79084793, 79084927], [79086792, 79086892], [79089259, 79089433], [79095192, 79096045]]	[[78985730, 78985879], [79024737, 79035226], [79039649, 79039745], [79041044, 79041278], [79042913, 79042936], [79048498, 79048617], [79054575, 79054725], [79057633, 79057780], [79058884, 79059032], [79084793, 79084927], [79086792, 79086892], [79089259, 79089433], [79095192, 79095439]]
ENST00000506603	[[79033964, 79035226], [79039649, 79039745], [79041044, 79041278], [79042913, 79042936], [79048498, 79048617], [79054575, 79054725], [79057633, 79059032], [79084793, 79084927], [79086792, 79086892], [79089259, 79089433], [79095192, 79096063]]	None
ENST00000505466	[[79054575, 79054725], [79057633, 79057780], [79058884, 79059242]]	None
NM_153610	[[78985658, 78985879], [79024737, 79035226], [79039649, 79039745], [79041044, 79041278], [79042913, 79042936], [79048498, 79048617], [79054575, 79054725], [79057633, 79057780], [79058884, 79059032], [79084793, 79084927], [79086792, 79086892], [79089259, 79089433], [79095192, 79096049]]	[[78985730, 78985879], [79024737, 79035226], [79039649, 79039745], [79041044, 79041278], [79042913, 79042936], [79048498, 79048617], [79054575, 79054725], [79057633, 79057780], [79058884, 79059032], [79084793, 79084927], [79086792, 79086892], [79089259, 79089433], [79095192, 79095439]]

Promoter

Chrom	Start	End	Description
chr5	78985593	78985604	CAGE_peak_2_at_CMYA5_5end
chr5	78985648	78985669	CAGE_peak_1_at_CMYA5_5end
chr5	78985673	78985680	CAGE_peak_3_at_CMYA5_5end
chr5	79028810	79028818	CAGE_peak_50_at_CMYA5_5end
chr5	79029312	79029328	CAGE_peak_9_at_CMYA5_5end
chr5	79030927	79030935	CAGE_peak_49_at_CMYA5_5end
chr5	79030939	79030949	CAGE_peak_11_at_CMYA5_5end
chr5	79032964	79032974	CAGE_peak_19_at_CMYA5_5end
chr5	79033206	79033217	CAGE_peak_15_at_CMYA5_5end
chr5	79033347	79033381	CAGE_peak_5_at_CMYA5_5end
chr5	79033461	79033496	CAGE_peak_4_at_CMYA5_5end
chr5	79033526	79033538	CAGE_peak_7_at_CMYA5_5end
chr5	79033539	79033560	CAGE_peak_8_at_CMYA5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I079701	79701829	79703290	0.89	[{'connected_gene': 'THBS4', 'score': 10.09}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.92}, {'connected_gene': 'CMYA5', 'score': 0.39}, {'connected_gene': 'GC05M079729', 'score': 0.29}]
chr5	GH05I079708	79706438	79706587	0.49	[{'connected_gene': 'THBS4', 'score': 10.09}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.92}, {'connected_gene': 'CMYA5', 'score': 0.37}, {'connected_gene': 'GC05M079729', 'score': 0.31}]
chr5	GH05I079705	79705383	79706182	0.2	[{'connected_gene': 'THBS4', 'score': 10.09}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.92}, {'connected_gene': 'CMYA5', 'score': 0.37}, {'connected_gene': 'GC05M079729', 'score': 0.31}]
chr5	GH05I080109	80109694	80112159	0.67	[{'connected_gene': 'SERINC5', 'score': 10.92}, {'connected_gene': 'CMYA5', 'score': 5.97}, {'connected_gene': 'GC05P080097', 'score': 0.39}, {'connected_gene': 'ENSG00000251675', 'score': 0.37}]
chr5	GH05I079694	79694726	79694967	1.03	[{'connected_gene': 'CMYA5', 'score': 14.29}, {'connected_gene': 'THBS4', 'score': 1.97}, {'connected_gene': 'GC05M079729', 'score': 0.28}]
chr5	GH05I079696	79696705	79698632	1.43	[{'connected_gene': 'CMYA5', 'score': 16.72}, {'connected_gene': 'THBS4', 'score': 1.58}, {'connected_gene': 'GC05M079729', 'score': 0.28}]
chr5	GH05I079685	79685998	79686147	0.43	[{'connected_gene': 'CMYA5', 'score': 0.77}, {'connected_gene': 'GC05M079620', 'score': 0.21}, {'connected_gene': 'PAPD4', 'score': 0.19}]
chr5	GH05I079759	79759558	79759707	0.58	[{'connected_gene': 'CMYA5', 'score': 10.75}, {'connected_gene': 'ENSG00000250258', 'score': 10.46}, {'connected_gene': 'GC05P079745', 'score': 0.39}, {'connected_gene': 'LOC102724557', 'score': 0.26}]
chr5	GH05I079754	79754115	79756079	0.81	[{'connected_gene': 'CMYA5', 'score': 10.75}, {'connected_gene': 'ENSG00000250258', 'score': 10.44}, {'connected_gene': 'GC05P079745', 'score': 0.44}, {'connected_gene': 'LOC102724557', 'score': 0.25}]
chr5	GH05I079727	79727067	79728815	0.31	[{'connected_gene': 'CMYA5', 'score': 10.84}, {'connected_gene': 'ENSG00000250258', 'score': 10.51}, {'connected_gene': 'GC05M079729', 'score': 0.44}]
chr5	GH05I079688	79688952	79691861	1.85	[{'connected_gene': 'CMYA5', 'score': 557.85}, {'connected_gene': 'GC05M079729', 'score': 0.26}]
chr5	GH05I079713	79713515	79714192	0.2	[{'connected_gene': 'CMYA5', 'score': 12.41}, {'connected_gene': 'GC05M079729', 'score': 0.37}]
chr5	GH05I079711	79711066	79711650	0.2	[{'connected_gene': 'CMYA5', 'score': 12.41}, {'connected_gene': 'GC05M079729', 'score': 0.34}]
chr5	GH05I079695	79695517	79696539	0.4	[{'connected_gene': 'CMYA5', 'score': 0.44}, {'connected_gene': 'GC05M079729', 'score': 0.28}]
chr5	GH05I079712	79711801	79712409	0.2	[{'connected_gene': 'CMYA5', 'score': 12.41}, {'connected_gene': 'GC05M079729', 'score': 0.34}]
chr5	GH05I079546	79546840	79548676	1.17	[{'connected_gene': 'LOC105379047', 'score': 550.77}, {'connected_gene': 'HOMER1', 'score': 5.52}, {'connected_gene': 'PAPD4', 'score': 5.43}, {'connected_gene': 'CMYA5', 'score': 2.64}, {'connected_gene': 'ENSG00000277818', 'score': 0.37}]
chr5	GH05I079801	79801001	79801400	0.72	[{'connected_gene': 'LOC102724557', 'score': 550.77}, {'connected_gene': 'ENSG00000250258', 'score': 18.58}, {'connected_gene': 'MTX3', 'score': 16.54}, {'connected_gene': 'PAPD4', 'score': 12.63}, {'connected_gene': 'RPS3AP20', 'score': 12.42}, {'connected_gene': 'JMY', 'score': 10.79}, {'connected_gene': 'CMYA5', 'score': 10.21}, {'connected_gene': 'GC05P079745', 'score': 0.22}]
chr5	GH05I079790	79790502	79791308	0.2	[{'connected_gene': 'LOC102724557', 'score': 0.39}, {'connected_gene': 'ENSG00000250258', 'score': 0.31}, {'connected_gene': 'GC05P079745', 'score': 0.25}, {'connected_gene': 'CMYA5', 'score': 0.15}]
chr5	GH05I079785	79785828	79786476	0.46	[{'connected_gene': 'LOC102724557', 'score': 0.37}, {'connected_gene': 'ENSG00000250258', 'score': 0.29}, {'connected_gene': 'GC05P079745', 'score': 0.26}, {'connected_gene': 'CMYA5', 'score': 0.15}]
chr5	GH05I079786	79786883	79787999	0.46	[{'connected_gene': 'LOC102724557', 'score': 0.39}, {'connected_gene': 'ENSG00000250258', 'score': 0.31}, {'connected_gene': 'GC05P079745', 'score': 0.26}, {'connected_gene': 'CMYA5', 'score': 0.15}]
chr5	GH05I079562	79562518	79562647	0.46	[{'connected_gene': 'ENSG00000277818', 'score': 550.77}, {'connected_gene': 'HOMER1', 'score': 10.58}, {'connected_gene': 'CMYA5', 'score': 10.09}, {'connected_gene': 'ENSG00000250258', 'score': 9.81}, {'connected_gene': 'THBS4', 'score': 9.25}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.23}, {'connected_gene': 'LOC105379047', 'score': 0.37}]
chr5	GH05I079706	79706737	79707445	0.31	[{'connected_gene': 'ENSG00000250258', 'score': 10.55}, {'connected_gene': 'THBS4', 'score': 10.09}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.92}, {'connected_gene': 'CMYA5', 'score': 0.37}, {'connected_gene': 'GC05M079729', 'score': 0.31}]
chr5	GH05I079707	79707595	79708485	0.38	[{'connected_gene': 'ENSG00000250258', 'score': 10.55}, {'connected_gene': 'THBS4', 'score': 9.72}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.71}, {'connected_gene': 'CMYA5', 'score': 0.37}, {'connected_gene': 'GC05M079729', 'score': 0.31}]
chr5	GH05I079560	79560749	79561954	1.15	[{'connected_gene': 'ENSG00000277818', 'score': 550.77}, {'connected_gene': 'CMYA5', 'score': 14.85}, {'connected_gene': 'HOMER1', 'score': 10.6}, {'connected_gene': 'ENSG00000250258', 'score': 9.81}, {'connected_gene': 'THBS4', 'score': 9.46}, {'connected_gene': 'CTD-2201I18.1', 'score': 9.45}, {'connected_gene': 'PAPD4', 'score': 4.18}, {'connected_gene': 'LOC105379047', 'score': 0.39}]
chr5	GH05I079746	79746631	79747356	0.2	[{'connected_gene': 'GC05P079745', 'score': 550.77}, {'connected_gene': 'CMYA5', 'score': 10.41}, {'connected_gene': 'LOC102724557', 'score': 0.23}]
chr5	GH05I079750	79750797	79752089	0.59	[{'connected_gene': 'ENSG00000250258', 'score': 10.33}, {'connected_gene': 'CMYA5', 'score': 10.21}, {'connected_gene': 'GC05P079745', 'score': 0.44}, {'connected_gene': 'LOC102724557', 'score': 0.25}]
chr5	GH05I079740	79740552	79741626	0.2	[{'connected_gene': 'GC05P079745', 'score': 0.77}, {'connected_gene': 'GC05M079729', 'score': 0.44}, {'connected_gene': 'CMYA5', 'score': 0.23}]
chr5	GH05I079726	79726235	79727027	0.2	[{'connected_gene': 'ENSG00000250258', 'score': 11.21}, {'connected_gene': 'CMYA5', 'score': 10.96}, {'connected_gene': 'GC05M079729', 'score': 0.44}]
chr5	GH05I079743	79743756	79746536	0.31	[{'connected_gene': 'GC05P079745', 'score': 550.77}, {'connected_gene': 'ENSG00000250258', 'score': 10.84}, {'connected_gene': 'CMYA5', 'score': 10.41}, {'connected_gene': 'GC05M079729', 'score': 0.39}]
chr5	GH05I079728	79728894	79735609	0.2	[{'connected_gene': 'GC05M079729', 'score': 550.77}, {'connected_gene': 'CMYA5', 'score': 10.83}, {'connected_gene': 'ENSG00000250258', 'score': 10.52}]
chr5	GH05I079737	79737001	79737200	0.4	[{'connected_gene': 'GC05M079729', 'score': 0.77}, {'connected_gene': 'GC05P079745', 'score': 0.44}, {'connected_gene': 'CMYA5', 'score': 0.25}]
chr5	GH05I079742	79742106	79743592	0.79	[{'connected_gene': 'GC05P079745', 'score': 0.77}, {'connected_gene': 'GC05M079729', 'score': 0.44}, {'connected_gene': 'CMYA5', 'score': 0.23}]
chr5	GH05I079621	79621198	79621347	0.38	[{'connected_gene': 'GC05M079620', 'score': 550.77}, {'connected_gene': 'PAPD4', 'score': 0.44}, {'connected_gene': 'CMYA5', 'score': 0.2}]
chr5	GH05I079770	79770963	79771895	0.96	[{'connected_gene': 'ENSG00000250258', 'score': 11.54}, {'connected_gene': 'GC05P079745', 'score': 0.31}, {'connected_gene': 'LOC102724557', 'score': 0.31}, {'connected_gene': 'CMYA5', 'score': 0.18}]
chr5	GH05I079774	79774618	79774767	0.76	[{'connected_gene': 'ENSG00000250258', 'score': 11.36}, {'connected_gene': 'GC05P079745', 'score': 0.31}, {'connected_gene': 'LOC102724557', 'score': 0.31}, {'connected_gene': 'CMYA5', 'score': 0.18}]
chr5	GH05I079795	79795110	79796479	0.6	[{'connected_gene': 'ENSG00000250258', 'score': 17.87}, {'connected_gene': 'LOC102724557', 'score': 0.44}, {'connected_gene': 'GC05P079745', 'score': 0.23}, {'connected_gene': 'CMYA5', 'score': 0.14}]
chr5	GH05I079793	79793059	79794297	0.38	[{'connected_gene': 'ENSG00000250258', 'score': 12.99}, {'connected_gene': 'LOC102724557', 'score': 0.44}, {'connected_gene': 'GC05P079745', 'score': 0.25}, {'connected_gene': 'CMYA5', 'score': 0.15}]
chr5	GH05I079791	79791680	79792586	0.43	[{'connected_gene': 'ENSG00000250258', 'score': 15.35}, {'connected_gene': 'LOC102724557', 'score': 0.44}, {'connected_gene': 'GC05P079745', 'score': 0.25}, {'connected_gene': 'CMYA5', 'score': 0.15}]