PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371505	[[44246479, 44248127], [44249846, 44250296], [44253700, 44254269], [44255285, 44255655], [44265395, 44265425]]	[[44247917, 44248127], [44249846, 44250296], [44253700, 44254269], [44255285, 44255562]]
ENST00000371503	[[44247896, 44248127], [44253700, 44254269], [44255285, 44255655], [44265395, 44265458]]	[[44247917, 44248127], [44253700, 44254087]]
ENST00000371504	[[44247901, 44248127], [44253700, 44254090]]	[[44247917, 44248127], [44253700, 44254087]]
NM_182539	[[44247896, 44248127], [44249846, 44250296], [44253700, 44254269], [44255285, 44255655], [44265395, 44265458]]	[[44247917, 44248127], [44249846, 44250296], [44253700, 44254269], [44255285, 44255562]]

Promoter

Chrom	Start	End	Description
chr6	44265397	44265405	CAGE_peak_3_at_TCTE1_5end
chr6	44265411	44265445	CAGE_peak_1_at_TCTE1_5end
chr6	44265446	44265462	CAGE_peak_2_at_TCTE1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I044312	44312135	44313973	2.13	[{'connected_gene': 'AARS2', 'score': 562.2}, {'connected_gene': 'ZNF318', 'score': 45.54}, {'connected_gene': 'ABCC10', 'score': 33.62}, {'connected_gene': 'RPS2P29', 'score': 32.97}, {'connected_gene': 'POLH', 'score': 28.46}, {'connected_gene': 'GTPBP2', 'score': 27.24}, {'connected_gene': 'POLR1C', 'score': 26.23}, {'connected_gene': 'XPO5', 'score': 23.88}, {'connected_gene': 'RPL34P14', 'score': 19.6}, {'connected_gene': 'ENSG00000271754', 'score': 18.56}, {'connected_gene': 'MYMX', 'score': 12.67}, {'connected_gene': 'CDC5L', 'score': 11.16}, {'connected_gene': 'ENSG00000271970', 'score': 11.12}, {'connected_gene': 'YIPF3', 'score': 10.01}, {'connected_gene': 'TMEM151B', 'score': 9.51}, {'connected_gene': 'TCTE1', 'score': 0.37}, {'connected_gene': 'ENSG00000272442', 'score': 0.28}]
chr6	GH06I044308	44308740	44309949	0.31	[{'connected_gene': 'AARS2', 'score': 0.77}, {'connected_gene': 'TCTE1', 'score': 0.39}, {'connected_gene': 'ENSG00000272442', 'score': 0.28}]
chr6	GH06I044232	44232665	44236361	1.32	[{'connected_gene': 'GTPBP2', 'score': 15.8}, {'connected_gene': 'RPS2P29', 'score': 12.62}, {'connected_gene': 'ABCC10', 'score': 11.99}, {'connected_gene': 'ZNF318', 'score': 11.79}, {'connected_gene': 'POLH', 'score': 11.48}, {'connected_gene': 'CAPN11', 'score': 11.41}, {'connected_gene': 'SLC35B2', 'score': 11.39}, {'connected_gene': 'NFKBIE', 'score': 11.34}, {'connected_gene': 'AARS2', 'score': 10.53}, {'connected_gene': 'TMEM151B', 'score': 10.5}, {'connected_gene': 'RPL34P14', 'score': 10.29}, {'connected_gene': 'YIPF3', 'score': 10.0}, {'connected_gene': 'TCTE1', 'score': 6.16}, {'connected_gene': 'SLC29A1', 'score': 5.85}, {'connected_gene': 'GC06P044236', 'score': 0.77}]
chr6	GH06I043944	43944983	43946254	0.76	[{'connected_gene': 'POLR1C', 'score': 13.5}, {'connected_gene': 'RPS2P29', 'score': 11.75}, {'connected_gene': 'PTK7', 'score': 11.72}, {'connected_gene': 'ZNF318', 'score': 10.09}, {'connected_gene': 'RPL34P14', 'score': 9.92}, {'connected_gene': 'TCTE1', 'score': 5.4}, {'connected_gene': 'LOC105375067', 'score': 0.26}, {'connected_gene': 'GC06M043993', 'score': 0.25}]
chr6	GH06I044275	44275188	44277008	0.65	[{'connected_gene': 'TMEM151B', 'score': 7.01}, {'connected_gene': 'ENSG00000272442', 'score': 0.77}, {'connected_gene': 'TCTE1', 'score': 0.34}]
chr6	GH06I044283	44283529	44283845	0.24	[{'connected_gene': 'SLC35B2', 'score': 12.41}, {'connected_gene': 'AARS2', 'score': 11.35}, {'connected_gene': 'SPATS1', 'score': 11.06}, {'connected_gene': 'TMEM63B', 'score': 10.78}, {'connected_gene': 'MRPL14', 'score': 10.78}, {'connected_gene': 'TMEM151B', 'score': 8.7}, {'connected_gene': 'TCTE1', 'score': 1.74}, {'connected_gene': 'ENSG00000272442', 'score': 0.39}]
chr6	GH06I044292	44292214	44292273	0.5	[{'connected_gene': 'TCTE1', 'score': 550.44}, {'connected_gene': 'AARS2', 'score': 12.01}, {'connected_gene': 'NFKBIE', 'score': 11.51}, {'connected_gene': 'SLC35B2', 'score': 11.49}, {'connected_gene': 'SPATS1', 'score': 10.8}, {'connected_gene': 'TMEM63B', 'score': 10.18}, {'connected_gene': 'MRPL14', 'score': 10.17}, {'connected_gene': 'SLC29A1', 'score': 10.02}, {'connected_gene': 'ENSG00000272442', 'score': 0.37}, {'connected_gene': 'TMEM151B', 'score': 0.34}]
chr6	GH06I044304	44304844	44304993	0.76	[{'connected_gene': 'TCTE1', 'score': 0.44}, {'connected_gene': 'AARS2', 'score': 0.44}, {'connected_gene': 'ENSG00000272442', 'score': 0.29}, {'connected_gene': 'TMEM151B', 'score': 0.29}]
chr6	GH06I044121	44121401	44121600	0.46	[{'connected_gene': 'TCTE1', 'score': 5.89}, {'connected_gene': 'TMEM63B', 'score': 0.44}, {'connected_gene': 'MRPL14', 'score': 0.44}, {'connected_gene': 'PIR46189', 'score': 0.39}]
chr6	GH06I044296	44296970	44298810	1.3	[{'connected_gene': 'TCTE1', 'score': 558.72}, {'connected_gene': 'POLR1C', 'score': 14.63}, {'connected_gene': 'RPS2P29', 'score': 10.13}, {'connected_gene': 'ENSG00000271754', 'score': 9.78}, {'connected_gene': 'TMEM151B', 'score': 6.93}, {'connected_gene': 'AARS2', 'score': 0.37}, {'connected_gene': 'ENSG00000272442', 'score': 0.34}]
chr6	GH06I044701	44701786	44702007	0.42	[{'connected_gene': 'TCTE1', 'score': 5.26}, {'connected_gene': 'LOC101929770', 'score': 0.31}, {'connected_gene': 'GC06M044627', 'score': 0.2}, {'connected_gene': 'GC06M044626', 'score': 0.2}]
chr6	GH06I043836	43836544	43836654	1.11	[{'connected_gene': 'CAPN11', 'score': 15.27}, {'connected_gene': 'TCTE1', 'score': 11.82}, {'connected_gene': 'VEGFA', 'score': 11.47}, {'connected_gene': 'ABCC10', 'score': 10.85}, {'connected_gene': 'RSPH9', 'score': 3.64}, {'connected_gene': 'LRRC73', 'score': 3.22}, {'connected_gene': 'MAD2L1BP', 'score': 1.65}, {'connected_gene': 'LOC105375069', 'score': 0.77}, {'connected_gene': 'LOC105375070', 'score': 0.28}, {'connected_gene': 'GC06P043362', 'score': 0.04}]