PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000541084	[[113760104, 113760219], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773430]]	[[113760110, 113760219], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773322]]
ENST00000346342	[[113760104, 113760219], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113774345]]	[[113760155, 113760219], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773322]]
ENST00000375581	[[113760120, 113760219], [113761158, 113761224], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113774995]]	[[113760155, 113760219], [113761158, 113761224], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773322]]
ENST00000444337	[[113760152, 113760219], [113765017, 113765164], [113768088, 113768274], [113769973, 113770114], [113771079, 113771102]]	[[113760155, 113760219], [113765017, 113765164], [113768088, 113768102]]
ENST00000479674	[[113764653, 113765164], [113768088, 113768274], [113771079, 113771149]]	None
ENST00000473085	[[113764992, 113765164], [113768065, 113768090], [113768160, 113768274], [113768877, 113769098], [113769191, 113769217]]	None
NM_001267554	[[113760101, 113760219], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113774995]]	[[113760155, 113760219], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773322]]
NR_051961	[[113760101, 113760219], [113765017, 113765164], [113768088, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113774995]]	None
NM_019616	[[113760101, 113760219], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113774995]]	[[113760155, 113760219], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773322]]
NM_000131	[[113760101, 113760219], [113761158, 113761224], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113774995]]	[[113760155, 113760219], [113761158, 113761224], [113765003, 113765164], [113768065, 113768090], [113768160, 113768274], [113769973, 113770114], [113771079, 113771189], [113771786, 113771910], [113772726, 113773322]]

Promoter

Chrom	Start	End	Description
chr13	113760098	113760110	CAGE_peak_1_at_F7_5end
chr13	113760134	113760150	CAGE_peak_2_at_F7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I113182	113182982	113189499	1.4	[{'connected_gene': 'PROZ', 'score': 26.95}, {'connected_gene': 'PCID2', 'score': 11.9}, {'connected_gene': 'CUL4A', 'score': 11.9}, {'connected_gene': 'F10-AS1', 'score': 11.03}, {'connected_gene': 'KARSP2', 'score': 11.03}, {'connected_gene': 'F10', 'score': 11.02}, {'connected_gene': 'GRTP1', 'score': 10.68}, {'connected_gene': 'F7', 'score': 10.66}, {'connected_gene': 'LAMP1', 'score': 10.6}, {'connected_gene': 'ENSG00000269356', 'score': 6.33}, {'connected_gene': 'ENSG00000269125', 'score': 0.34}, {'connected_gene': 'GC13M113076', 'score': 0.06}]
chr13	GH13I113175	113175643	113181301	0.97	[{'connected_gene': 'PROZ', 'score': 27.49}, {'connected_gene': 'PCID2', 'score': 21.55}, {'connected_gene': 'CUL4A', 'score': 11.49}, {'connected_gene': 'F10-AS1', 'score': 11.2}, {'connected_gene': 'KARSP2', 'score': 11.2}, {'connected_gene': 'F10', 'score': 11.18}, {'connected_gene': 'F7', 'score': 10.69}, {'connected_gene': 'GRTP1', 'score': 10.67}, {'connected_gene': 'GRTP1-AS1', 'score': 10.56}, {'connected_gene': 'ENSG00000269356', 'score': 6.29}, {'connected_gene': 'ENSG00000269125', 'score': 0.39}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113121	113121907	113123910	1.61	[{'connected_gene': 'F10', 'score': 558.61}, {'connected_gene': 'F7', 'score': 6.0}, {'connected_gene': 'F10-AS1', 'score': 0.44}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113489	113489103	113496555	2.58	[{'connected_gene': 'TMCO3', 'score': 584.44}, {'connected_gene': 'DCUN1D2', 'score': 556.21}, {'connected_gene': 'TUBGCP3', 'score': 19.83}, {'connected_gene': 'PCID2', 'score': 14.74}, {'connected_gene': 'GRTP1', 'score': 13.18}, {'connected_gene': 'CDC16', 'score': 12.15}, {'connected_gene': 'DCUN1D2-AS', 'score': 11.64}, {'connected_gene': 'ADPRHL1', 'score': 11.09}, {'connected_gene': 'CHAMP1', 'score': 10.19}, {'connected_gene': 'GRTP1-AS1', 'score': 9.92}, {'connected_gene': 'F7', 'score': 6.31}, {'connected_gene': 'F10', 'score': 3.88}, {'connected_gene': 'PROZ', 'score': 2.93}, {'connected_gene': 'ENSG00000276916', 'score': 0.37}, {'connected_gene': 'GC13M113076', 'score': 0.31}]
chr13	GH13I113083	113083067	113084530	0.91	[{'connected_gene': 'MCF2L', 'score': 27.14}, {'connected_gene': 'F7', 'score': 13.58}, {'connected_gene': 'PROZ', 'score': 10.99}, {'connected_gene': 'MCF2L-AS1', 'score': 10.7}, {'connected_gene': 'GC13M113086', 'score': 0.77}, {'connected_gene': 'GC13M113087', 'score': 0.77}, {'connected_gene': 'PIR52168', 'score': 0.44}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113021	113021729	113024188	1.31	[{'connected_gene': 'MCF2L', 'score': 19.22}, {'connected_gene': 'MCF2L-AS1', 'score': 11.4}, {'connected_gene': 'F7', 'score': 11.07}, {'connected_gene': 'PROZ', 'score': 10.37}, {'connected_gene': 'F10', 'score': 10.37}, {'connected_gene': 'F10-AS1', 'score': 10.36}, {'connected_gene': 'KARSP2', 'score': 10.36}, {'connected_gene': 'ENSG00000269376', 'score': 0.39}, {'connected_gene': 'PIR52168', 'score': 0.23}]
chr13	GH13I113101	113101444	113103508	0.52	[{'connected_gene': 'F7', 'score': 11.23}, {'connected_gene': 'F10', 'score': 6.42}, {'connected_gene': 'MCF2L', 'score': 5.82}, {'connected_gene': 'GC13P113090', 'score': 0.39}, {'connected_gene': 'GC13P113091', 'score': 0.39}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113078	113078539	113079413	0.51	[{'connected_gene': 'F7', 'score': 17.29}, {'connected_gene': 'F10', 'score': 10.89}, {'connected_gene': 'F10-AS1', 'score': 10.86}, {'connected_gene': 'KARSP2', 'score': 10.86}, {'connected_gene': 'PROZ', 'score': 10.7}, {'connected_gene': 'PIR52168', 'score': 0.77}, {'connected_gene': 'GC13M113086', 'score': 0.44}, {'connected_gene': 'GC13M113087', 'score': 0.44}, {'connected_gene': 'MCF2L', 'score': 0.09}, {'connected_gene': 'GC13M113076', 'score': 0.04}]
chr13	GH13I113105	113105167	113106302	1.41	[{'connected_gene': 'F7', 'score': 561.35}, {'connected_gene': 'MCF2L', 'score': 6.33}, {'connected_gene': 'F10', 'score': 6.02}, {'connected_gene': 'GC13P113090', 'score': 0.37}, {'connected_gene': 'GC13P113091', 'score': 0.37}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113108	113108572	113111696	0.52	[{'connected_gene': 'F7', 'score': 10.61}, {'connected_gene': 'MCF2L', 'score': 6.03}, {'connected_gene': 'F10', 'score': 0.39}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113097	113097707	113099301	0.38	[{'connected_gene': 'F7', 'score': 10.65}, {'connected_gene': 'MCF2L', 'score': 5.71}, {'connected_gene': 'GC13P113090', 'score': 0.44}, {'connected_gene': 'GC13P113091', 'score': 0.44}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113138	113138919	113139729	0.95	[{'connected_gene': 'F7', 'score': 11.5}, {'connected_gene': 'GRTP1-AS1', 'score': 10.33}, {'connected_gene': 'GRTP1', 'score': 10.33}, {'connected_gene': 'F10', 'score': 7.25}, {'connected_gene': 'KARSP2', 'score': 0.44}, {'connected_gene': 'LOC102724474', 'score': 0.39}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113137	113137604	113138496	0.43	[{'connected_gene': 'F7', 'score': 11.5}, {'connected_gene': 'GRTP1-AS1', 'score': 10.33}, {'connected_gene': 'GRTP1', 'score': 10.33}, {'connected_gene': 'KARSP2', 'score': 0.44}, {'connected_gene': 'F10', 'score': 0.37}, {'connected_gene': 'LOC102724474', 'score': 0.37}, {'connected_gene': 'GC13M113076', 'score': 0.05}]
chr13	GH13I113327	113327086	113328359	0.54	[{'connected_gene': 'GRTP1-AS1', 'score': 13.19}, {'connected_gene': 'GRTP1', 'score': 13.12}, {'connected_gene': 'LAMP1', 'score': 11.82}, {'connected_gene': 'F7', 'score': 10.3}, {'connected_gene': 'DCUN1D2', 'score': 10.04}, {'connected_gene': 'DCUN1D2-AS', 'score': 9.82}, {'connected_gene': 'GC13P113323', 'score': 0.44}, {'connected_gene': 'PIR60275', 'score': 0.44}, {'connected_gene': 'ENSG00000276434', 'score': 0.39}, {'connected_gene': 'GC13M113076', 'score': 0.08}]
chr13	GH13I113072	113072700	113076224	0.31	[{'connected_gene': 'PIR52168', 'score': 550.77}, {'connected_gene': 'MCF2L', 'score': 18.09}, {'connected_gene': 'F7', 'score': 12.46}, {'connected_gene': 'F10', 'score': 11.65}, {'connected_gene': 'F10-AS1', 'score': 11.63}, {'connected_gene': 'KARSP2', 'score': 11.63}, {'connected_gene': 'PROZ', 'score': 10.69}, {'connected_gene': 'MCF2L-AS1', 'score': 10.37}, {'connected_gene': 'ENSG00000269376', 'score': 0.21}]
chr13	GH13I113092	113092037	113095058	0.31	[{'connected_gene': 'GC13P113090', 'score': 0.77}, {'connected_gene': 'GC13P113091', 'score': 0.77}, {'connected_gene': 'F7', 'score': 0.39}, {'connected_gene': 'MCF2L', 'score': 0.08}, {'connected_gene': 'GC13M113076', 'score': 0.04}]
chr13	GH13I113090	113090447	113090616	0.43	[{'connected_gene': 'GC13P113090', 'score': 550.77}, {'connected_gene': 'GC13P113091', 'score': 550.77}, {'connected_gene': 'F7', 'score': 0.37}, {'connected_gene': 'MCF2L', 'score': 0.08}, {'connected_gene': 'GC13M113076', 'score': 0.04}]