PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264870	[[6144317, 6146005], [6152045, 6152182], [6167690, 6167851], [6174812, 6175100], [6182220, 6182374], [6196029, 6196118], [6197455, 6197559], [6222265, 6222404], [6224918, 6225093], [6248544, 6248652], [6251043, 6251162], [6266790, 6267042], [6305583, 6305772], [6318767, 6318915], [6320819, 6321067]]	[[6145851, 6146005], [6152045, 6152182], [6167690, 6167851], [6174812, 6175100], [6182220, 6182374], [6196029, 6196118], [6197455, 6197559], [6222265, 6222404], [6224918, 6225093], [6248544, 6248652], [6251043, 6251162], [6266790, 6267042], [6305583, 6305772], [6318767, 6318897]]
ENST00000479211	[[6251139, 6251162], [6266790, 6267042], [6305583, 6305887]]	None
ENST00000414279	[[6266945, 6267042], [6305583, 6305772], [6318767, 6318915], [6320819, 6320892], [6321171, 6321246]]	[[6266945, 6267042], [6305583, 6305772], [6318767, 6318897]]
ENST00000431222	[[6266966, 6267042], [6305583, 6305772], [6318767, 6318915], [6320819, 6320892], [6321032, 6321138]]	[[6266966, 6267042], [6305583, 6305772], [6318767, 6318915], [6320819, 6320892], [6321032, 6321103]]
ENST00000445223	[[6206643, 6206835], [6222265, 6222404], [6224918, 6225041]]	[[6206789, 6206835], [6222265, 6222404], [6224918, 6225041]]
ENST00000451619	[[6305345, 6305772], [6318767, 6318915], [6320819, 6320875]]	[[6305533, 6305772], [6318767, 6318915], [6320819, 6320875]]
NM_000129	[[6144310, 6146005], [6152045, 6152182], [6167690, 6167851], [6174812, 6175100], [6182220, 6182374], [6196029, 6196118], [6197455, 6197559], [6222265, 6222404], [6224918, 6225093], [6248544, 6248652], [6251043, 6251162], [6266790, 6267042], [6305583, 6305772], [6318767, 6318915], [6320819, 6320924]]	[[6145851, 6146005], [6152045, 6152182], [6167690, 6167851], [6174812, 6175100], [6182220, 6182374], [6196029, 6196118], [6197455, 6197559], [6222265, 6222404], [6224918, 6225093], [6248544, 6248652], [6251043, 6251162], [6266790, 6267042], [6305583, 6305772], [6318767, 6318897]]

Promoter

Chrom	Start	End	Description
chr6	6222293	6222308	CAGE_peak_4_at_F13A1_5end
chr6	6318851	6318869	CAGE_peak_2_at_F13A1_5end
chr6	6320887	6320902	CAGE_peak_1_at_F13A1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I006849	6849503	6852301	1.57	[{'connected_gene': 'RIOK1', 'score': 13.87}, {'connected_gene': 'RREB1', 'score': 13.79}, {'connected_gene': 'SNRNP48', 'score': 12.11}, {'connected_gene': 'ENSG00000225092', 'score': 11.16}, {'connected_gene': 'F13A1', 'score': 10.94}, {'connected_gene': 'GC06M006870', 'score': 0.34}, {'connected_gene': 'GC06M006819', 'score': 0.31}]
chr6	GH06I006545	6545700	6547889	1.06	[{'connected_gene': 'NRN1', 'score': 11.32}, {'connected_gene': 'F13A1', 'score': 10.32}, {'connected_gene': 'LY86', 'score': 5.47}, {'connected_gene': 'GC06P006543', 'score': 0.77}, {'connected_gene': 'GC06M006539', 'score': 0.77}, {'connected_gene': 'LY86-AS1', 'score': 0.18}]
chr6	GH06I006469	6469164	6469418	0.63	[{'connected_gene': 'F13A1', 'score': 10.63}, {'connected_gene': 'LY86', 'score': 2.83}, {'connected_gene': 'GC06M006465', 'score': 0.77}, {'connected_gene': 'GC06P006509', 'score': 0.28}, {'connected_gene': 'LY86-AS1', 'score': 0.1}]
chr6	GH06I006406	6406304	6408285	1.08	[{'connected_gene': 'F13A1', 'score': 10.54}, {'connected_gene': 'LY86', 'score': 3.72}, {'connected_gene': 'GC06P006393', 'score': 0.39}, {'connected_gene': 'GC06P006434', 'score': 0.31}, {'connected_gene': 'LY86-AS1', 'score': 0.08}]
chr6	GH06I006314	6314580	6314877	0.33	[{'connected_gene': 'F13A1', 'score': 4.79}, {'connected_gene': 'LY86', 'score': 2.48}, {'connected_gene': 'GC06M006300', 'score': 0.39}]
chr6	GH06I006151	6151273	6151560	0.22	[{'connected_gene': 'F13A1', 'score': 14.27}, {'connected_gene': 'RREB1', 'score': 4.9}, {'connected_gene': 'MIR5683', 'score': 0.37}, {'connected_gene': 'GC06P006126', 'score': 0.34}]
chr6	GH06I006436	6436756	6437514	0.31	[{'connected_gene': 'F13A1', 'score': 10.4}, {'connected_gene': 'GC06P006434', 'score': 0.77}, {'connected_gene': 'GC06M006452', 'score': 0.39}, {'connected_gene': 'LY86-AS1', 'score': 0.09}]
chr6	GH06I006459	6459904	6459914	0.22	[{'connected_gene': 'F13A1', 'score': 10.54}, {'connected_gene': 'GC06M006465', 'score': 0.44}, {'connected_gene': 'GC06M006451', 'score': 0.44}, {'connected_gene': 'GC06P006434', 'score': 0.31}, {'connected_gene': 'LY86-AS1', 'score': 0.1}]
chr6	GH06I006483	6483315	6483707	0.44	[{'connected_gene': 'F13A1', 'score': 10.68}, {'connected_gene': 'GC06M006465', 'score': 0.37}, {'connected_gene': 'GC06P006509', 'score': 0.31}, {'connected_gene': 'LY86-AS1', 'score': 0.12}]
chr6	GH06I006460	6460637	6462314	0.52	[{'connected_gene': 'F13A1', 'score': 10.53}, {'connected_gene': 'GC06M006465', 'score': 0.77}, {'connected_gene': 'GC06M006451', 'score': 0.44}, {'connected_gene': 'LY86-AS1', 'score': 0.1}]
chr6	GH06I006395	6395814	6396400	0.57	[{'connected_gene': 'F13A1', 'score': 11.22}, {'connected_gene': 'GC06P006393', 'score': 0.77}, {'connected_gene': 'GC06P006434', 'score': 0.28}, {'connected_gene': 'LY86-AS1', 'score': 0.07}]
chr6	GH06I005723	5723299	5724915	1.49	[{'connected_gene': 'F13A1', 'score': 8.85}, {'connected_gene': 'LOC101927972', 'score': 4.88}, {'connected_gene': 'GC06M005726', 'score': 0.77}, {'connected_gene': 'GC06M005708', 'score': 0.44}, {'connected_gene': 'GC06P005718', 'score': 0.44}, {'connected_gene': 'FARS2', 'score': 0.04}]
chr6	GH06I006164	6164183	6164531	0.35	[{'connected_gene': 'F13A1', 'score': 2.5}, {'connected_gene': 'MIR5683', 'score': 0.77}, {'connected_gene': 'GC06P006126', 'score': 0.28}]
chr6	GH06I006351	6351398	6352020	0.2	[{'connected_gene': 'F13A1', 'score': 11.84}, {'connected_gene': 'SNAPC5P1', 'score': 0.77}, {'connected_gene': 'GC06M006365', 'score': 0.31}, {'connected_gene': 'LY86-AS1', 'score': 0.06}]
chr6	GH06I006349	6349344	6350590	0.2	[{'connected_gene': 'F13A1', 'score': 11.86}, {'connected_gene': 'SNAPC5P1', 'score': 0.77}, {'connected_gene': 'GC06M006365', 'score': 0.31}, {'connected_gene': 'LY86-AS1', 'score': 0.06}]
chr6	GH06I006243	6243762	6244559	0.2	[{'connected_gene': 'F13A1', 'score': 10.65}, {'connected_gene': 'GC06P006237', 'score': 0.44}, {'connected_gene': 'GC06P006275', 'score': 0.29}]
chr6	GH06I006319	6319201	6321384	1.42	[{'connected_gene': 'F13A1', 'score': 556.82}, {'connected_gene': 'GC06M006300', 'score': 0.37}]
chr6	GH06I006318	6318001	6318600	0.2	[{'connected_gene': 'F13A1', 'score': 0.77}, {'connected_gene': 'GC06M006300', 'score': 0.37}]
chr6	GH06I006330	6330854	6333000	1.19	[{'connected_gene': 'F13A1', 'score': 6.15}, {'connected_gene': 'GC06M006328', 'score': 0.39}]
chr6	GH06I006346	6346320	6349291	0.31	[{'connected_gene': 'SNAPC5P1', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 12.32}, {'connected_gene': 'LY86', 'score': 5.23}, {'connected_gene': 'GC06M006365', 'score': 0.29}, {'connected_gene': 'LY86-AS1', 'score': 0.06}]
chr6	GH06I006542	6542825	6544214	0.64	[{'connected_gene': 'GC06P006543', 'score': 550.77}, {'connected_gene': 'GC06M006539', 'score': 550.77}, {'connected_gene': 'NRN1', 'score': 11.32}, {'connected_gene': 'F13A1', 'score': 10.32}, {'connected_gene': 'LY86', 'score': 5.22}, {'connected_gene': 'LY86-AS1', 'score': 0.18}]
chr6	GH06I006467	6467428	6467621	0.79	[{'connected_gene': 'GC06M006465', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 10.63}, {'connected_gene': 'NRN1', 'score': 7.65}, {'connected_gene': 'GC06P006509', 'score': 0.26}, {'connected_gene': 'LY86-AS1', 'score': 0.1}]
chr6	GH06I006515	6515708	6516473	0.75	[{'connected_gene': 'GC06P006517', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 10.44}, {'connected_gene': 'NRN1', 'score': 10.37}, {'connected_gene': 'ENSG00000261211', 'score': 5.41}, {'connected_gene': 'GC06P006509', 'score': 0.44}, {'connected_gene': 'LY86-AS1', 'score': 0.14}]
chr6	GH06I006396	6395601	6395800	0.52	[{'connected_gene': 'GC06P006393', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 11.23}, {'connected_gene': 'GC06P006434', 'score': 0.28}, {'connected_gene': 'LY86-AS1', 'score': 0.07}]
chr6	GH06I006379	6379688	6379837	0.52	[{'connected_gene': 'GC06M006365', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 10.55}, {'connected_gene': 'GC06P006385', 'score': 0.44}, {'connected_gene': 'LY86-AS1', 'score': 0.07}]
chr6	GH06I006390	6390519	6393492	1.23	[{'connected_gene': 'GC06P006393', 'score': 550.77}, {'connected_gene': 'GC06M006393', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 19.24}, {'connected_gene': 'GC06P006385', 'score': 0.44}, {'connected_gene': 'LY86-AS1', 'score': 0.07}]
chr6	GH06I006385	6385978	6387000	0.2	[{'connected_gene': 'GC06P006385', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 11.0}, {'connected_gene': 'GC06M006393', 'score': 0.44}, {'connected_gene': 'LY86-AS1', 'score': 0.07}]
chr6	GH06I005718	5718028	5720948	0.2	[{'connected_gene': 'GC06P005718', 'score': 550.77}, {'connected_gene': 'F13A1', 'score': 8.85}, {'connected_gene': 'GC06M005726', 'score': 0.44}, {'connected_gene': 'GC06M005708', 'score': 0.39}, {'connected_gene': 'FARS2', 'score': 0.05}]