PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368444	[[123100619, 123101012], [123101435, 123101608], [123102237, 123102339], [123104861, 123105219]]	[[123100939, 123101012], [123101435, 123101608], [123102237, 123102339], [123104861, 123104912]]
ENST00000356535	[[123100903, 123101012], [123101435, 123101608], [123102237, 123104041]]	[[123100939, 123101012], [123101435, 123101608], [123102237, 123102492]]
NM_001319042	[[123070345, 123070479], [123101435, 123101608], [123102237, 123102339], [123104861, 123105222]]	[[123070418, 123070479], [123101435, 123101608], [123102237, 123102339], [123104861, 123104912]]
NM_001319039	[[123100619, 123101012], [123101435, 123101608], [123102237, 123104041]]	[[123100939, 123101012], [123101435, 123101608], [123102237, 123102492]]
NM_001446	[[123100619, 123101012], [123101435, 123101608], [123102237, 123102339], [123104861, 123105222]]	[[123100939, 123101012], [123101435, 123101608], [123102237, 123102339], [123104861, 123104912]]
NM_001319041	[[123100619, 123101012], [123101435, 123105222]]	[[123100939, 123101012], [123101435, 123101656]]

Promoter

Chrom	Start	End	Description
chr6	123100738	123100763	CAGE_peak_2_at_FABP7_5end
chr6	123100819	123100828	CAGE_peak_3_at_FABP7_5end
chr6	123100853	123100874	CAGE_peak_1_at_FABP7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I122770	122770683	122771400	1.1	[{'connected_gene': 'FABP7', 'score': 8.98}, {'connected_gene': 'PKIB', 'score': 2.86}, {'connected_gene': 'SMPDL3A', 'score': 2.82}, {'connected_gene': 'RN7SL564P', 'score': 0.31}]
chr6	GH06I122772	122772141	122773611	0.62	[{'connected_gene': 'FABP7', 'score': 8.85}, {'connected_gene': 'PKIB', 'score': 5.31}, {'connected_gene': 'RN7SL564P', 'score': 0.31}]
chr6	GH06I122343	122343668	122343677	0.22	[{'connected_gene': 'FABP7', 'score': 1.5}, {'connected_gene': 'HSF2', 'score': 0.22}, {'connected_gene': 'RNU1-18P', 'score': 0.12}]
chr6	GH06I122832	122832776	122833585	0.88	[{'connected_gene': 'FABP7', 'score': 12.67}, {'connected_gene': 'SMPDL3A', 'score': 11.22}, {'connected_gene': 'PKIB', 'score': 4.35}, {'connected_gene': 'SERINC1', 'score': 3.86}, {'connected_gene': 'CLVS2', 'score': 2.3}, {'connected_gene': 'GC06M122861', 'score': 0.31}]
chr6	GH06I122754	122754336	122754485	0.31	[{'connected_gene': 'FABP7', 'score': 11.58}, {'connected_gene': 'SMPDL3A', 'score': 10.99}, {'connected_gene': 'RN7SL564P', 'score': 0.44}]
chr6	GH06I122778	122778358	122780110	1.08	[{'connected_gene': 'FABP7', 'score': 550.77}, {'connected_gene': 'RN7SL564P', 'score': 0.29}]
chr6	GH06I122838	122838898	122839201	0.22	[{'connected_gene': 'CLVS2', 'score': 3.47}, {'connected_gene': 'FABP7', 'score': 2.56}, {'connected_gene': 'GC06M122861', 'score': 0.34}, {'connected_gene': 'SMPDL3A', 'score': 0.23}]
chr6	GH06I122759	122759099	122759387	0.54	[{'connected_gene': 'SMPDL3A', 'score': 15.05}, {'connected_gene': 'SERINC1', 'score': 1.69}, {'connected_gene': 'PKIB', 'score': 1.45}, {'connected_gene': 'RN7SL564P', 'score': 0.39}, {'connected_gene': 'FABP7', 'score': 0.34}]
chr6	GH06I122735	122735150	122736991	0.78	[{'connected_gene': 'SMPDL3A', 'score': 16.34}, {'connected_gene': 'FABP7', 'score': 4.84}, {'connected_gene': 'PKIB', 'score': 4.08}, {'connected_gene': 'RN7SL564P', 'score': 0.44}, {'connected_gene': 'ENSG00000272472', 'score': 0.16}]
chr6	GH06I122753	122753739	122753956	0.61	[{'connected_gene': 'SMPDL3A', 'score': 16.03}, {'connected_gene': 'FABP7', 'score': 11.58}, {'connected_gene': 'RN7SL564P', 'score': 0.44}]
chr6	GH06I122845	122845750	122846802	0.2	[{'connected_gene': 'SMPDL3A', 'score': 10.77}, {'connected_gene': 'FABP7', 'score': 10.35}, {'connected_gene': 'GC06M122861', 'score': 0.39}]
chr6	GH06I122853	122853696	122853845	0.63	[{'connected_gene': 'SMPDL3A', 'score': 10.92}, {'connected_gene': 'FABP7', 'score': 10.62}, {'connected_gene': 'GC06M122861', 'score': 0.44}]