PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000282344	[[27640292, 27643521], [27645207, 27645286], [27649327, 27649525], [27664019, 27664103], [27664218, 27664295], [27669737, 27669967], [27679867, 27680081], [27690652, 27690733], [27745728, 27746033]]	[[27643419, 27643521], [27645207, 27645286], [27649327, 27649525], [27664019, 27664103], [27664218, 27664295], [27669737, 27669967], [27679867, 27680081], [27690652, 27690733], [27745728, 27745776]]
NM_182488	[[27640286, 27643521], [27645207, 27645286], [27649327, 27649525], [27664019, 27664103], [27664218, 27664295], [27669737, 27669967], [27679867, 27680081], [27690652, 27690733], [27745728, 27746033]]	[[27643419, 27643521], [27645207, 27645286], [27649327, 27649525], [27664019, 27664103], [27664218, 27664295], [27669737, 27669967], [27679867, 27680081], [27690652, 27690733], [27745728, 27745776]]

Promoter

Chrom	Start	End	Description
chr13	27745913	27745924	CAGE_peak_2_at_USP12_5end
chr13	27745936	27745961	CAGE_peak_1_at_USP12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I027137	27137376	27139195	0.93	[{'connected_gene': 'RPL21', 'score': 23.96}, {'connected_gene': 'SNORA27', 'score': 22.2}, {'connected_gene': 'USP12', 'score': 19.92}, {'connected_gene': 'USP12-AS2', 'score': 17.53}, {'connected_gene': 'PAN3', 'score': 13.68}, {'connected_gene': 'SNORD102', 'score': 10.88}, {'connected_gene': 'LINC00412', 'score': 10.32}, {'connected_gene': 'RASL11A', 'score': 9.97}, {'connected_gene': 'USP12-AS1', 'score': 0.39}]
chr13	GH13I027250	27250234	27254322	2.25	[{'connected_gene': 'RPL21', 'score': 550.77}, {'connected_gene': 'GC13M027245', 'score': 550.77}, {'connected_gene': 'LINC02340', 'score': 550.77}, {'connected_gene': 'USP12', 'score': 14.05}, {'connected_gene': 'WASF3', 'score': 13.82}, {'connected_gene': 'PAN3', 'score': 12.72}, {'connected_gene': 'SNORA27', 'score': 12.12}, {'connected_gene': 'MTIF3', 'score': 4.61}, {'connected_gene': 'PIR55933', 'score': 0.77}]
chr13	GH13I027130	27130002	27133253	1.35	[{'connected_gene': 'RASL11A', 'score': 10.67}, {'connected_gene': 'USP12', 'score': 9.33}, {'connected_gene': 'USP12-AS2', 'score': 5.79}, {'connected_gene': 'USP12-AS1', 'score': 0.44}]
chr13	GH13I027129	27129344	27129601	0.58	[{'connected_gene': 'RASL11A', 'score': 10.66}, {'connected_gene': 'USP12-AS1', 'score': 0.77}, {'connected_gene': 'USP12', 'score': 0.26}]
chr13	GH13I027151	27151489	27152745	0.7	[{'connected_gene': 'PAN3', 'score': 11.15}, {'connected_gene': 'RASL11A', 'score': 5.12}, {'connected_gene': 'USP12', 'score': 0.37}, {'connected_gene': 'USP12-AS1', 'score': 0.31}]
chr13	GH13I026981	26981502	26985800	1.8	[{'connected_gene': 'MTIF3', 'score': 6.09}, {'connected_gene': 'RASL11A', 'score': 5.43}, {'connected_gene': 'USP12', 'score': 2.59}, {'connected_gene': 'RPL21', 'score': 1.18}, {'connected_gene': 'RPS21P8', 'score': 0.44}, {'connected_gene': 'ENSG00000283579', 'score': 0.44}]
chr13	GH13I027194	27194087	27196522	1.07	[{'connected_gene': 'USP12', 'score': 14.22}, {'connected_gene': 'RASL11A', 'score': 11.51}, {'connected_gene': 'LINC00412', 'score': 11.47}, {'connected_gene': 'SNORD102', 'score': 10.79}, {'connected_gene': 'RPL21', 'score': 10.79}, {'connected_gene': 'SNORA27', 'score': 10.78}, {'connected_gene': 'MTIF3', 'score': 4.87}, {'connected_gene': 'PIR56248', 'score': 0.34}, {'connected_gene': 'USP12-AS2', 'score': 0.34}, {'connected_gene': 'LINC02340', 'score': 0.22}]
chr13	GH13I027146	27146901	27148430	0.64	[{'connected_gene': 'USP12', 'score': 8.74}, {'connected_gene': 'RASL11A', 'score': 4.95}, {'connected_gene': 'USP12-AS1', 'score': 0.34}]
chr13	GH13I027182	27182144	27184187	1.15	[{'connected_gene': 'USP12', 'score': 15.61}, {'connected_gene': 'LINC00412', 'score': 11.69}, {'connected_gene': 'RPL21', 'score': 11.23}, {'connected_gene': 'SNORD102', 'score': 11.22}, {'connected_gene': 'SNORA27', 'score': 11.22}, {'connected_gene': 'RASL11A', 'score': 10.66}, {'connected_gene': 'MTIF3', 'score': 4.75}, {'connected_gene': 'USP12-AS2', 'score': 0.39}, {'connected_gene': 'PIR56248', 'score': 0.29}, {'connected_gene': 'LINC02340', 'score': 0.2}]
chr13	GH13I027174	27174561	27175354	0.77	[{'connected_gene': 'USP12', 'score': 20.6}, {'connected_gene': 'LINC00412', 'score': 11.67}, {'connected_gene': 'RPL21', 'score': 11.24}, {'connected_gene': 'SNORD102', 'score': 11.24}, {'connected_gene': 'SNORA27', 'score': 11.24}, {'connected_gene': 'RASL11A', 'score': 10.98}, {'connected_gene': 'USP12-AS2', 'score': 0.77}, {'connected_gene': 'PIR56248', 'score': 0.26}]
chr13	GH13I027259	27259343	27261673	1.1	[{'connected_gene': 'USP12', 'score': 11.74}, {'connected_gene': 'LINC00412', 'score': 10.57}, {'connected_gene': 'RNU6-70P', 'score': 10.29}, {'connected_gene': 'GC13P027267', 'score': 0.77}, {'connected_gene': 'RASL11A', 'score': 0.44}]
chr13	GH13I027167	27167768	27173637	1.98	[{'connected_gene': 'USP12', 'score': 557.41}, {'connected_gene': 'USP12-AS2', 'score': 550.77}, {'connected_gene': 'SNORA27', 'score': 16.41}, {'connected_gene': 'SNORD102', 'score': 11.71}, {'connected_gene': 'RPL21', 'score': 11.71}, {'connected_gene': 'RASL11A', 'score': 10.98}, {'connected_gene': 'LINC00412', 'score': 10.49}, {'connected_gene': 'USP12-AS1', 'score': 0.25}]
chr13	GH13I027154	27154684	27155018	0.35	[{'connected_gene': 'RNU6-70P', 'score': 10.11}, {'connected_gene': 'RPL21', 'score': 10.09}, {'connected_gene': 'SNORA27', 'score': 10.09}, {'connected_gene': 'SNORD102', 'score': 10.09}, {'connected_gene': 'USP12', 'score': 3.51}, {'connected_gene': 'USP12-AS1', 'score': 0.31}]
chr13	GH13I027055	27055664	27055813	0.58	[{'connected_gene': 'LOC105370124', 'score': 550.77}, {'connected_gene': 'RASL11A', 'score': 10.74}, {'connected_gene': 'USP12', 'score': 7.09}, {'connected_gene': 'GC13P027043', 'score': 0.39}]
chr13	GH13I027056	27055915	27056366	0.58	[{'connected_gene': 'LOC105370124', 'score': 550.77}, {'connected_gene': 'RASL11A', 'score': 10.74}, {'connected_gene': 'USP12', 'score': 5.92}, {'connected_gene': 'GC13P027068', 'score': 0.39}]
chr13	GH13I027053	27053364	27055591	1.12	[{'connected_gene': 'LOC105370124', 'score': 550.77}, {'connected_gene': 'RASL11A', 'score': 15.94}, {'connected_gene': 'LINC00412', 'score': 10.47}, {'connected_gene': 'RPL21', 'score': 10.47}, {'connected_gene': 'SNORD102', 'score': 10.47}, {'connected_gene': 'SNORA27', 'score': 10.47}, {'connected_gene': 'USP12', 'score': 5.39}, {'connected_gene': 'GC13P027043', 'score': 0.39}]
chr13	GH13I027121	27121000	27121201	0.38	[{'connected_gene': 'LINC00412', 'score': 10.13}, {'connected_gene': 'USP12', 'score': 8.44}, {'connected_gene': 'USP12-AS1', 'score': 0.77}, {'connected_gene': 'RBBP8P2', 'score': 0.26}]
chr13	GH13I027135	27134801	27135200	0.49	[{'connected_gene': 'USP12-AS2', 'score': 11.55}, {'connected_gene': 'USP12', 'score': 11.55}, {'connected_gene': 'RPL21', 'score': 10.88}, {'connected_gene': 'SNORA27', 'score': 10.88}, {'connected_gene': 'SNORD102', 'score': 10.88}, {'connected_gene': 'LINC00412', 'score': 10.31}, {'connected_gene': 'USP12-AS1', 'score': 0.44}]
chr13	GH13I027134	27134001	27134400	0.38	[{'connected_gene': 'USP12-AS2', 'score': 11.55}, {'connected_gene': 'USP12', 'score': 11.55}, {'connected_gene': 'RPL21', 'score': 10.88}, {'connected_gene': 'SNORA27', 'score': 10.88}, {'connected_gene': 'SNORD102', 'score': 10.88}, {'connected_gene': 'LINC00412', 'score': 10.31}, {'connected_gene': 'USP12-AS1', 'score': 0.44}]
chr13	GH13I027139	27139664	27139813	0.31	[{'connected_gene': 'USP12-AS1', 'score': 0.39}, {'connected_gene': 'USP12', 'score': 0.29}]
chr13	GH13I027124	27124597	27126697	0.92	[{'connected_gene': 'USP12-AS1', 'score': 550.77}, {'connected_gene': 'LINC00412', 'score': 10.14}, {'connected_gene': 'USP12', 'score': 0.25}]
chr13	GH13I027078	27078759	27080893	0.66	[{'connected_gene': 'USP12-AS1', 'score': 11.0}, {'connected_gene': 'USP12-AS2', 'score': 10.99}, {'connected_gene': 'USP12', 'score': 10.99}, {'connected_gene': 'SNORA27', 'score': 10.65}, {'connected_gene': 'SNORD102', 'score': 10.65}, {'connected_gene': 'RPL21', 'score': 10.65}, {'connected_gene': 'LINC00412', 'score': 9.89}, {'connected_gene': 'RBBP8P2', 'score': 0.77}]