PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000372270	[[81891437, 81891587], [81901837, 81901935], [81903978, 81904099], [81904655, 81904820]]	[[81901899, 81901935], [81903978, 81904099], [81904655, 81904666]]
ENST00000372267	[[81892346, 81892582], [81901837, 81901935], [81904655, 81904793]]	[[81892518, 81892582], [81901837, 81901935], [81904655, 81904757]]
ENST00000372263	[[81892476, 81892582], [81901837, 81901935], [81903978, 81904099], [81904655, 81905115]]	[[81892518, 81892582], [81901837, 81901935], [81903978, 81904099], [81904655, 81904666]]
ENST00000465660	[[81903803, 81904099], [81904655, 81904786]]	None
NR_138551	[[81891438, 81891587], [81901837, 81901935], [81903978, 81904099], [81904655, 81904820]]	None
NM_001012973	[[81892257, 81892582], [81901837, 81901935], [81903978, 81904099], [81904655, 81904784]]	[[81892518, 81892582], [81901837, 81901935], [81903978, 81904099], [81904655, 81904666]]
NM_001331125	[[81892257, 81892582], [81901837, 81901935], [81904655, 81904820]]	[[81892518, 81892582], [81901837, 81901935], [81904655, 81904757]]

Promoter

Chrom	Start	End	Description
chr10	81891416	81891433	CAGE_peak_4_at_PLAC9_5end
chr10	81892415	81892447	CAGE_peak_2_at_PLAC9_5end
chr10	81892478	81892493	CAGE_peak_1_at_PLAC9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I080179	80179853	80180671	0.2	[{'connected_gene': 'MBL1P', 'score': 19.46}, {'connected_gene': 'PLAC9', 'score': 5.23}, {'connected_gene': 'GC10M080155', 'score': 0.34}, {'connected_gene': 'ANXA11', 'score': 0.31}]
chr10	GH10I080177	80177562	80178624	0.66	[{'connected_gene': 'MBL1P', 'score': 11.1}, {'connected_gene': 'PLAC9', 'score': 10.35}, {'connected_gene': 'ANXA11', 'score': 9.57}, {'connected_gene': 'GC10M080155', 'score': 0.34}]
chr10	GH10I080406	80406380	80417111	2.65	[{'connected_gene': 'FAM213A', 'score': 569.7}, {'connected_gene': 'DYDC2', 'score': 18.4}, {'connected_gene': 'LOC642361', 'score': 12.05}, {'connected_gene': 'DYDC1', 'score': 10.19}, {'connected_gene': 'MBL1P', 'score': 7.51}, {'connected_gene': 'PLAC9', 'score': 6.88}, {'connected_gene': 'ANXA11', 'score': 6.45}, {'connected_gene': 'PIR57963', 'score': 0.34}]
chr10	GH10I080431	80431248	80432318	0.38	[{'connected_gene': 'FAM213A', 'score': 29.68}, {'connected_gene': 'TSPAN14', 'score': 12.66}, {'connected_gene': 'DYDC1', 'score': 10.14}, {'connected_gene': 'DYDC2', 'score': 10.11}, {'connected_gene': 'PLAC9', 'score': 6.73}, {'connected_gene': 'ANXA11', 'score': 6.38}, {'connected_gene': 'PIR57963', 'score': 0.77}]
chr10	GH10I080453	80453020	80475714	2.7	[{'connected_gene': 'TSPAN14', 'score': 561.06}, {'connected_gene': 'FAM213A', 'score': 27.16}, {'connected_gene': 'LOC101929574', 'score': 9.63}, {'connected_gene': 'DYDC1', 'score': 9.6}, {'connected_gene': 'DYDC2', 'score': 9.58}, {'connected_gene': 'ANXA11', 'score': 7.17}, {'connected_gene': 'PLAC9', 'score': 5.81}, {'connected_gene': 'MBL1P', 'score': 5.1}, {'connected_gene': 'SH2D4B', 'score': 2.37}, {'connected_gene': 'PIR41876', 'score': 0.26}]
chr10	GH10I079981	79981372	79982594	1.26	[{'connected_gene': 'SFTPD', 'score': 584.92}, {'connected_gene': 'ZNRF2P3', 'score': 550.77}, {'connected_gene': 'DPY19L2P5', 'score': 550.77}, {'connected_gene': 'GC10P081716', 'score': 550.77}, {'connected_gene': 'ENSG00000272489', 'score': 25.24}, {'connected_gene': 'ZMIZ1-AS1', 'score': 10.27}, {'connected_gene': 'PLAC9', 'score': 8.26}, {'connected_gene': 'MBL1P', 'score': 6.25}]
chr10	GH10I080153	80153830	80169233	1.42	[{'connected_gene': 'LINC00857', 'score': 27.82}, {'connected_gene': 'ENSG00000272489', 'score': 20.81}, {'connected_gene': 'MBL1P', 'score': 20.43}, {'connected_gene': 'ANXA11', 'score': 20.16}, {'connected_gene': 'PLAC9', 'score': 14.98}, {'connected_gene': 'MAT1A', 'score': 5.52}, {'connected_gene': 'SFTPD', 'score': 4.64}, {'connected_gene': 'TSPAN14', 'score': 4.41}, {'connected_gene': 'GC10M080155', 'score': 0.44}, {'connected_gene': 'PIR39736', 'score': 0.44}]
chr10	GH10I080174	80174790	80175426	0.2	[{'connected_gene': 'LINC00857', 'score': 15.72}, {'connected_gene': 'MBL1P', 'score': 11.1}, {'connected_gene': 'PLAC9', 'score': 10.35}, {'connected_gene': 'GC10M080155', 'score': 0.37}, {'connected_gene': 'ANXA11', 'score': 0.29}]
chr10	GH10I080143	80143760	80146654	1.23	[{'connected_gene': 'LINC00857', 'score': 18.57}, {'connected_gene': 'ANXA11', 'score': 12.47}, {'connected_gene': 'PLAC9', 'score': 6.85}, {'connected_gene': 'TSPAN14', 'score': 4.31}, {'connected_gene': 'PIR39736', 'score': 0.44}]
chr10	GH10I080149	80149737	80153121	0.6	[{'connected_gene': 'LINC00857', 'score': 24.86}, {'connected_gene': 'PLAC9', 'score': 13.23}, {'connected_gene': 'ANXA11', 'score': 12.5}, {'connected_gene': 'PIR39736', 'score': 0.77}]
chr10	GH10I080192	80192892	80209662	2.67	[{'connected_gene': 'ANXA11', 'score': 559.91}, {'connected_gene': 'MBL1P', 'score': 21.15}, {'connected_gene': 'ENSG00000235858', 'score': 12.0}, {'connected_gene': 'LINC00857', 'score': 10.32}, {'connected_gene': 'ENSG00000272489', 'score': 10.29}, {'connected_gene': 'MAT1A', 'score': 10.17}, {'connected_gene': 'DYDC2', 'score': 8.8}, {'connected_gene': 'PLAC9', 'score': 5.67}, {'connected_gene': 'SH2D4B', 'score': 5.07}, {'connected_gene': 'LOC642361', 'score': 4.35}, {'connected_gene': 'LOC101929574', 'score': 4.33}, {'connected_gene': 'TSPAN14', 'score': 1.23}, {'connected_gene': 'GC10M080155', 'score': 0.25}]
chr10	GH10I080170	80170429	80173941	1.39	[{'connected_gene': 'ANXA11', 'score': 568.38}, {'connected_gene': 'LINC00857', 'score': 22.69}, {'connected_gene': 'MBL1P', 'score': 20.43}, {'connected_gene': 'PLAC9', 'score': 10.4}, {'connected_gene': 'GC10M080155', 'score': 0.37}]
chr10	GH10I080135	80135351	80138903	1.02	[{'connected_gene': 'ANXA11', 'score': 11.25}, {'connected_gene': 'LINC00857', 'score': 11.24}, {'connected_gene': 'PLAC9', 'score': 5.07}, {'connected_gene': 'PIR39736', 'score': 0.37}]
chr10	GH10I080190	80190791	80192444	0.58	[{'connected_gene': 'PLAC9', 'score': 5.21}, {'connected_gene': 'ANXA11', 'score': 0.39}, {'connected_gene': 'GC10M080155', 'score': 0.28}]
chr10	GH10I080182	80182684	80184565	0.2	[{'connected_gene': 'PLAC9', 'score': 10.85}, {'connected_gene': 'ANXA11', 'score': 0.34}, {'connected_gene': 'GC10M080155', 'score': 0.31}]
chr10	GH10I080132	80131765	80134119	1.72	[{'connected_gene': 'PLAC9', 'score': 567.67}, {'connected_gene': 'TMEM254-AS1', 'score': 7.31}, {'connected_gene': 'PIR39736', 'score': 0.34}]
chr10	GH10I080131	80131565	80131714	0.4	[{'connected_gene': 'PLAC9', 'score': 550.77}, {'connected_gene': 'GC10P081045', 'score': 0.77}]
chr10	GH10I080121	80121149	80123977	0.46	[{'connected_gene': 'TMEM254-AS1', 'score': 27.87}, {'connected_gene': 'MBL1P', 'score': 19.75}, {'connected_gene': 'ANXA11', 'score': 10.65}, {'connected_gene': 'LINC00857', 'score': 10.64}, {'connected_gene': 'DYDC2', 'score': 9.95}, {'connected_gene': 'SFTPD', 'score': 6.39}, {'connected_gene': 'PLAC9', 'score': 5.58}, {'connected_gene': 'TMEM254', 'score': 5.05}, {'connected_gene': 'LOC101929574', 'score': 4.96}, {'connected_gene': 'RPL22P18', 'score': 0.77}, {'connected_gene': 'PIR41694', 'score': 0.37}]
chr10	GH10I079273	79273166	79276664	1.38	[{'connected_gene': 'PPIF', 'score': 31.74}, {'connected_gene': 'ZMIZ1', 'score': 5.98}, {'connected_gene': 'PLAC9', 'score': 5.52}, {'connected_gene': 'GC10P080929', 'score': 0.15}]
chr10	GH10I080185	80185802	80190399	1.64	[{'connected_gene': 'ENSG00000272489', 'score': 26.69}, {'connected_gene': 'MBL1P', 'score': 20.42}, {'connected_gene': 'LOC642361', 'score': 10.98}, {'connected_gene': 'LINC00857', 'score': 10.81}, {'connected_gene': 'NUTM2B-AS1', 'score': 10.21}, {'connected_gene': 'PLAC9', 'score': 7.2}, {'connected_gene': 'ANXA11', 'score': 6.79}, {'connected_gene': 'ENSG00000235858', 'score': 5.6}, {'connected_gene': 'GC10M080155', 'score': 0.29}]