PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000302945	[[28366779, 28367239], [28367702, 28368905]]	[[28366827, 28367239], [28367702, 28368085]]
NM_145657	[[28366779, 28367239], [28367702, 28368089]]	[[28366827, 28367239], [28367702, 28368085]]

Promoter

Chrom	Start	End	Description
chr13	28366616	28366622	CAGE_peak_1_at_GSX1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I027359	27359304	27359453	0.63	[{'connected_gene': 'RASL11A', 'score': 10.73}, {'connected_gene': 'GSX1', 'score': 10.67}, {'connected_gene': 'SNORA27', 'score': 10.19}, {'connected_gene': 'SNORD102', 'score': 10.19}, {'connected_gene': 'RPL21', 'score': 10.19}, {'connected_gene': 'LINC01079', 'score': 0.39}, {'connected_gene': 'RNU6-70P', 'score': 0.37}]
chr13	GH13I027361	27361801	27362879	1.02	[{'connected_gene': 'RASL11A', 'score': 16.38}, {'connected_gene': 'GSX1', 'score': 10.67}, {'connected_gene': 'SNORA27', 'score': 10.19}, {'connected_gene': 'SNORD102', 'score': 10.19}, {'connected_gene': 'RPL21', 'score': 10.18}, {'connected_gene': 'LINC01079', 'score': 0.39}, {'connected_gene': 'RNU6-70P', 'score': 0.37}]
chr13	GH13I027808	27808547	27810022	0.43	[{'connected_gene': 'RASL11A', 'score': 9.98}, {'connected_gene': 'RNU6-63P', 'score': 9.82}, {'connected_gene': 'GSX1', 'score': 0.37}, {'connected_gene': 'GC13P027834', 'score': 0.37}]
chr13	GH13I027813	27813099	27813378	0.22	[{'connected_gene': 'RASL11A', 'score': 9.98}, {'connected_gene': 'RNU6-63P', 'score': 9.82}, {'connected_gene': 'GC13P027834', 'score': 0.37}, {'connected_gene': 'GSX1', 'score': 0.34}]
chr13	GH13I027340	27340705	27341024	0.24	[{'connected_gene': 'GSX1', 'score': 4.92}, {'connected_gene': 'RNU6-70P', 'score': 0.77}, {'connected_gene': 'GC13P027309', 'score': 0.29}]
chr13	GH13I027728	27728444	27728771	0.71	[{'connected_gene': 'GSX1', 'score': 11.06}, {'connected_gene': 'LOC105370129', 'score': 0.39}, {'connected_gene': 'NPM1P4', 'score': 0.29}, {'connected_gene': 'POLR1D', 'score': 0.14}]
chr13	GH13I027744	27744442	27745997	1.18	[{'connected_gene': 'GSX1', 'score': 11.67}, {'connected_gene': 'GC13P027748', 'score': 0.77}, {'connected_gene': 'LOC105370129', 'score': 0.44}]
chr13	GH13I027821	27821243	27823399	1.29	[{'connected_gene': 'GSX1', 'score': 12.88}, {'connected_gene': 'CDX2', 'score': 11.34}, {'connected_gene': 'RNU6-63P', 'score': 10.18}, {'connected_gene': 'GC13P027834', 'score': 0.44}, {'connected_gene': 'PLUT', 'score': 0.15}]
chr13	GH13I027820	27820708	27820733	0.31	[{'connected_gene': 'GSX1', 'score': 12.88}, {'connected_gene': 'CDX2', 'score': 11.33}, {'connected_gene': 'RNU6-63P', 'score': 10.18}, {'connected_gene': 'GC13P027834', 'score': 0.44}, {'connected_gene': 'PLUT', 'score': 0.15}]
chr13	GH13I027822	27821024	27821173	0.38	[{'connected_gene': 'GSX1', 'score': 12.88}, {'connected_gene': 'CDX2', 'score': 11.33}, {'connected_gene': 'RNU6-63P', 'score': 10.18}, {'connected_gene': 'GC13P027834', 'score': 0.44}, {'connected_gene': 'PLUT', 'score': 0.15}]
chr13	GH13I027853	27853424	27853593	0.2	[{'connected_gene': 'GSX1', 'score': 11.48}, {'connected_gene': 'CDX2', 'score': 11.16}, {'connected_gene': 'PLUT', 'score': 11.04}, {'connected_gene': 'PDX1', 'score': 11.04}, {'connected_gene': 'RNU6-73P', 'score': 0.34}, {'connected_gene': 'LOC105370130', 'score': 0.25}]
chr13	GH13I027850	27850665	27853156	0.56	[{'connected_gene': 'GSX1', 'score': 11.5}, {'connected_gene': 'CDX2', 'score': 11.16}, {'connected_gene': 'PLUT', 'score': 11.04}, {'connected_gene': 'PDX1', 'score': 11.04}, {'connected_gene': 'USP12-AS2', 'score': 4.32}, {'connected_gene': 'RNU6-73P', 'score': 0.34}, {'connected_gene': 'LOC105370130', 'score': 0.25}]
chr13	GH13I027806	27806844	27807033	0.43	[{'connected_gene': 'GSX1', 'score': 0.39}, {'connected_gene': 'GC13P027834', 'score': 0.34}]
chr13	GH13I027797	27797284	27797433	0.52	[{'connected_gene': 'GSX1', 'score': 0.77}, {'connected_gene': 'GC13P027834', 'score': 0.29}]
chr13	GH13I027790	27790177	27790440	0.58	[{'connected_gene': 'GSX1', 'score': 0.77}, {'connected_gene': 'GC13P027748', 'score': 0.26}]
chr13	GH13I027792	27792444	27792473	0.78	[{'connected_gene': 'GSX1', 'score': 550.77}, {'connected_gene': 'GC13P027748', 'score': 0.26}]
chr13	GH13I027793	27792664	27792723	1.04	[{'connected_gene': 'GSX1', 'score': 550.77}, {'connected_gene': 'GC13P027834', 'score': 0.28}]
chr13	GH13I027958	27958858	27982215	2	[{'connected_gene': 'CDX2', 'score': 557.17}, {'connected_gene': 'URAD', 'score': 22.79}, {'connected_gene': 'RPL21', 'score': 12.76}, {'connected_gene': 'PLUT', 'score': 12.55}, {'connected_gene': 'PDX1', 'score': 12.54}, {'connected_gene': 'GSX1', 'score': 10.83}, {'connected_gene': 'RN7SL272P', 'score': 10.79}, {'connected_gene': 'LNX2', 'score': 1.62}, {'connected_gene': 'FLT3', 'score': 1.36}, {'connected_gene': 'GC13M027960', 'score': 0.44}, {'connected_gene': 'LOC105370132', 'score': 0.44}]
chr13	GH13I027924	27924224	27924373	0.58	[{'connected_gene': 'CDX2', 'score': 12.47}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.77}, {'connected_gene': 'PDX1', 'score': 0.77}, {'connected_gene': 'ATP5F1EP2', 'score': 0.34}]
chr13	GH13I027929	27928976	27929393	0.38	[{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13	GH13I027927	27927145	27927443	0.43	[{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13	GH13I027926	27926618	27927136	0.43	[{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13	GH13I027928	27928204	27928233	0.58	[{'connected_gene': 'CDX2', 'score': 12.48}, {'connected_gene': 'GSX1', 'score': 11.14}, {'connected_gene': 'PLUT', 'score': 0.44}, {'connected_gene': 'ATP5F1EP2', 'score': 0.37}]
chr13	GH13I027984	27984344	27984533	0.86	[{'connected_gene': 'PLUT', 'score': 12.39}, {'connected_gene': 'PDX1', 'score': 12.39}, {'connected_gene': 'GSX1', 'score': 10.71}, {'connected_gene': 'URAD', 'score': 0.77}, {'connected_gene': 'LOC105370132', 'score': 0.77}]
chr13	GH13I027868	27868764	27868933	0.38	[{'connected_gene': 'PLUT', 'score': 11.46}, {'connected_gene': 'PDX1', 'score': 11.46}, {'connected_gene': 'GSX1', 'score': 10.76}, {'connected_gene': 'RNU6-63P', 'score': 9.74}, {'connected_gene': 'LOC105370130', 'score': 0.29}, {'connected_gene': 'RNU6-73P', 'score': 0.26}]
chr13	GH13I027776	27776064	27776193	0.38	[{'connected_gene': 'PLUT', 'score': 10.59}, {'connected_gene': 'PDX1', 'score': 10.59}, {'connected_gene': 'RNU6-63P', 'score': 10.41}, {'connected_gene': 'GSX1', 'score': 0.37}, {'connected_gene': 'GC13P027748', 'score': 0.31}]
chr13	GH13I027952	27952463	27958474	1.78	[{'connected_gene': 'LINC00543', 'score': 550.77}, {'connected_gene': 'CDX2', 'score': 38.07}, {'connected_gene': 'PLUT', 'score': 12.6}, {'connected_gene': 'PDX1', 'score': 12.58}, {'connected_gene': 'GSX1', 'score': 10.74}, {'connected_gene': 'URAD', 'score': 8.01}, {'connected_gene': 'GC13M027960', 'score': 0.44}]
chr13	GH13I027829	27829801	27830425	1	[{'connected_gene': 'GC13P027834', 'score': 550.77}, {'connected_gene': 'RNU6-73P', 'score': 550.77}, {'connected_gene': 'GSX1', 'score': 11.82}, {'connected_gene': 'LOC105370130', 'score': 0.19}, {'connected_gene': 'PLUT', 'score': 0.16}]
chr13	GH13I027826	27826059	27827491	1.08	[{'connected_gene': 'GC13P027834', 'score': 550.77}, {'connected_gene': 'RNU6-73P', 'score': 550.77}, {'connected_gene': 'GSX1', 'score': 0.29}, {'connected_gene': 'PLUT', 'score': 0.16}]