PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000321660	[[35894337, 35894559], [35896505, 35897863]]	[[35894495, 35894559], [35896505, 35897554]]
NM_153368	[[35894337, 35894559], [35896505, 35897863]]	[[35894495, 35894559], [35896505, 35897554]]

Promoter

Chrom	Start	End	Description
chr10	35894264	35894279	CAGE_peak_2_at_GJD4_5end
chr10	35894364	35894370	CAGE_peak_4_at_GJD4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I035593	35593898	35595354	0.38	[{'connected_gene': 'FZD8', 'score': 11.03}, {'connected_gene': 'GJD4', 'score': 0.39}, {'connected_gene': 'GC10P035401', 'score': 0.08}]
chr10	GH10I035585	35585952	35586611	0.2	[{'connected_gene': 'FZD8', 'score': 10.72}, {'connected_gene': 'ENSG00000271335', 'score': 6.44}, {'connected_gene': 'GJD4', 'score': 0.37}, {'connected_gene': 'GC10P035401', 'score': 0.09}]
chr10	GH10I035435	35435001	35435200	0.4	[{'connected_gene': 'CCNY', 'score': 5.75}, {'connected_gene': 'GC10P035401', 'score': 0.29}, {'connected_gene': 'GJD4', 'score': 0.09}]
chr10	GH10I035416	35416600	35417762	0.97	[{'connected_gene': 'CCNY', 'score': 5.54}, {'connected_gene': 'GC10P035401', 'score': 0.37}, {'connected_gene': 'GJD4', 'score': 0.09}]
chr10	GH10I035425	35425801	35428000	0.74	[{'connected_gene': 'CCNY', 'score': 5.77}, {'connected_gene': 'GC10P035401', 'score': 0.34}, {'connected_gene': 'GJD4', 'score': 0.1}]
chr10	GH10I035523	35523813	35523922	0.31	[{'connected_gene': 'GJD4', 'score': 0.18}, {'connected_gene': 'GC10P035401', 'score': 0.13}, {'connected_gene': 'CCNY', 'score': 0.06}]
chr10	GH10I035563	35563413	35563562	0.76	[{'connected_gene': 'GJD4', 'score': 0.26}, {'connected_gene': 'GC10P035401', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.06}]
chr10	GH10I035517	35517489	35517921	0.4	[{'connected_gene': 'GJD4', 'score': 0.17}, {'connected_gene': 'GC10P035401', 'score': 0.13}, {'connected_gene': 'CCNY', 'score': 0.06}]
chr10	GH10I035533	35533693	35533822	0.8	[{'connected_gene': 'GJD4', 'score': 0.19}, {'connected_gene': 'GC10P035401', 'score': 0.12}, {'connected_gene': 'CCNY', 'score': 0.06}]
chr10	GH10I035505	35505084	35506062	0.52	[{'connected_gene': 'GJD4', 'score': 0.15}, {'connected_gene': 'GC10P035401', 'score': 0.15}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035545	35545127	35548121	0.91	[{'connected_gene': 'GJD4', 'score': 0.22}, {'connected_gene': 'GC10P035401', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.06}]
chr10	GH10I035605	35605389	35605448	0.79	[{'connected_gene': 'GJD4', 'score': 550.77}, {'connected_gene': 'ENSG00000273312', 'score': 0.77}]
chr10	GH10I035578	35578255	35578594	0.43	[{'connected_gene': 'GJD4', 'score': 11.5}, {'connected_gene': 'GC10P035401', 'score': 0.1}]
chr10	GH10I035420	35420014	35425442	1.11	[{'connected_gene': 'RNU7-77P', 'score': 9.86}, {'connected_gene': 'CREM', 'score': 9.86}, {'connected_gene': 'CCNY', 'score': 5.77}, {'connected_gene': 'ENSG00000271335', 'score': 5.58}, {'connected_gene': 'GC10P035401', 'score': 0.34}, {'connected_gene': 'GJD4', 'score': 0.09}]
chr10	GH10I035418	35418201	35418400	0.51	[{'connected_gene': 'RNU7-77P', 'score': 9.86}, {'connected_gene': 'CREM', 'score': 9.86}, {'connected_gene': 'GC10P035401', 'score': 0.37}, {'connected_gene': 'CCNY', 'score': 0.09}, {'connected_gene': 'GJD4', 'score': 0.09}]
chr10	GH10I035411	35411564	35416479	1.35	[{'connected_gene': 'ENSG00000271335', 'score': 37.02}, {'connected_gene': 'CCNY', 'score': 5.77}, {'connected_gene': 'GC10P035401', 'score': 0.39}, {'connected_gene': 'GJD4', 'score': 0.08}]
chr10	GH10I035404	35404001	35404600	0.4	[{'connected_gene': 'GC10P035401', 'score': 0.77}, {'connected_gene': 'CCNY', 'score': 0.1}, {'connected_gene': 'GJD4', 'score': 0.08}]
chr10	GH10I035407	35407756	35410945	1.22	[{'connected_gene': 'ENSG00000271335', 'score': 37.03}, {'connected_gene': 'CCNY', 'score': 5.77}, {'connected_gene': 'GC10P035401', 'score': 0.44}, {'connected_gene': 'GJD4', 'score': 0.08}]
chr10	GH10I035417	35417801	35418000	0.51	[{'connected_gene': 'GC10P035401', 'score': 0.37}, {'connected_gene': 'CCNY', 'score': 0.09}, {'connected_gene': 'GJD4', 'score': 0.09}]
chr10	GH10I035455	35455947	35457679	0.2	[{'connected_gene': 'ENSG00000271335', 'score': 35.16}, {'connected_gene': 'GC10P035401', 'score': 0.23}, {'connected_gene': 'GJD4', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035499	35498466	35498506	0.2	[{'connected_gene': 'GC10P035401', 'score': 0.15}, {'connected_gene': 'GJD4', 'score': 0.14}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035458	35458613	35458762	0.89	[{'connected_gene': 'GC10P035401', 'score': 0.22}, {'connected_gene': 'GJD4', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035564	35564144	35565979	0.58	[{'connected_gene': 'ENSG00000271335', 'score': 38.05}, {'connected_gene': 'GJD4', 'score': 0.26}, {'connected_gene': 'GC10P035401', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.06}]
chr10	GH10I035459	35459427	35460371	0.31	[{'connected_gene': 'GC10P035401', 'score': 0.22}, {'connected_gene': 'GJD4', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035464	35464000	35465282	0.97	[{'connected_gene': 'GC10P035401', 'score': 0.21}, {'connected_gene': 'GJD4', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035493	35493201	35493600	0.68	[{'connected_gene': 'ENSG00000271335', 'score': 10.17}, {'connected_gene': 'GC10P035401', 'score': 0.16}, {'connected_gene': 'GJD4', 'score': 0.14}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035498	35498073	35498222	0.31	[{'connected_gene': 'GC10P035401', 'score': 0.15}, {'connected_gene': 'GJD4', 'score': 0.14}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035470	35470356	35471506	0.66	[{'connected_gene': 'ENSG00000271335', 'score': 35.3}, {'connected_gene': 'GC10P035401', 'score': 0.2}, {'connected_gene': 'GJD4', 'score': 0.12}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035481	35481093	35482310	0.31	[{'connected_gene': 'ENSG00000271335', 'score': 38.32}, {'connected_gene': 'GC10P035401', 'score': 0.18}, {'connected_gene': 'GJD4', 'score': 0.13}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035438	35438406	35443300	0.62	[{'connected_gene': 'ENSG00000271335', 'score': 34.99}, {'connected_gene': 'GC10P035401', 'score': 0.28}, {'connected_gene': 'GJD4', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035436	35436001	35436200	0.51	[{'connected_gene': 'GC10P035401', 'score': 0.29}, {'connected_gene': 'GJD4', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.09}]
chr10	GH10I035465	35465601	35466400	0.88	[{'connected_gene': 'ENSG00000271335', 'score': 29.69}, {'connected_gene': 'GC10P035401', 'score': 0.21}, {'connected_gene': 'GJD4', 'score': 0.12}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035454	35453001	35453200	0.51	[{'connected_gene': 'GC10P035401', 'score': 0.23}, {'connected_gene': 'GJD4', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035453	35453433	35455599	1.17	[{'connected_gene': 'GC10P035401', 'score': 0.23}, {'connected_gene': 'GJD4', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035461	35461001	35461401	0.66	[{'connected_gene': 'ENSG00000271335', 'score': 35.03}, {'connected_gene': 'GC10P035401', 'score': 0.22}, {'connected_gene': 'GJD4', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035431	35431483	35432312	0.49	[{'connected_gene': 'ENSG00000271335', 'score': 35.39}, {'connected_gene': 'GC10P035401', 'score': 0.31}, {'connected_gene': 'GJD4', 'score': 0.09}, {'connected_gene': 'CCNY', 'score': 0.09}]
chr10	GH10I035486	35486049	35488676	0.89	[{'connected_gene': 'ENSG00000271335', 'score': 35.28}, {'connected_gene': 'GC10P035401', 'score': 0.17}, {'connected_gene': 'GJD4', 'score': 0.13}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035495	35495402	35496599	1.11	[{'connected_gene': 'GC10P035401', 'score': 0.16}, {'connected_gene': 'GJD4', 'score': 0.14}, {'connected_gene': 'CCNY', 'score': 0.07}]
chr10	GH10I035444	35444647	35446033	0.52	[{'connected_gene': 'GC10P035401', 'score': 0.26}, {'connected_gene': 'GJD4', 'score': 0.1}, {'connected_gene': 'CCNY', 'score': 0.08}]
chr10	GH10I035433	35433633	35434558	1.06	[{'connected_gene': 'ENSG00000271335', 'score': 35.07}, {'connected_gene': 'GC10P035401', 'score': 0.29}, {'connected_gene': 'GJD4', 'score': 0.09}, {'connected_gene': 'CCNY', 'score': 0.09}]
chr10	GH10I035579	35579733	35580134	0.31	[{'connected_gene': 'ENSG00000271335', 'score': 37.82}, {'connected_gene': 'GJD4', 'score': 12.95}, {'connected_gene': 'GC10P035401', 'score': 0.1}]
chr10	GH10I035574	35574358	35575990	0.59	[{'connected_gene': 'ENSG00000271335', 'score': 38.1}, {'connected_gene': 'GJD4', 'score': 0.29}, {'connected_gene': 'GC10P035401', 'score': 0.09}]
chr10	GH10I035607	35607601	35608400	0.31	[{'connected_gene': 'ENSG00000273312', 'score': 550.77}, {'connected_gene': 'GJD4', 'score': 0.77}]
chr10	GH10I035446	35446402	35452600	1.65	[{'connected_gene': 'ENSG00000271335', 'score': 37.66}, {'connected_gene': 'CREM', 'score': 6.51}, {'connected_gene': 'CCNY', 'score': 5.98}, {'connected_gene': 'GC10P035401', 'score': 0.25}, {'connected_gene': 'GJD4', 'score': 0.1}]
chr10	GH10I035462	35462013	35463800	1.23	[{'connected_gene': 'ENSG00000271335', 'score': 35.3}, {'connected_gene': 'LOC105376493', 'score': 4.7}, {'connected_gene': 'GC10P035401', 'score': 0.21}, {'connected_gene': 'GJD4', 'score': 0.11}, {'connected_gene': 'CCNY', 'score': 0.08}]