PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000356438	[[125753508, 125753912], [125761317, 125761367], [125768998, 125769053], [125769238, 125770539]]	[[125769263, 125770163]]
ENST00000425380	[[125756954, 125757660], [125761317, 125761367], [125769238, 125770543]]	[[125769263, 125770163]]
ENST00000526028	[[125757676, 125758155], [125761317, 125761367], [125769238, 125770512]]	[[125769263, 125770163]]
NM_145014	[[125753508, 125753912], [125761317, 125761367], [125768998, 125769053], [125769238, 125770541]]	[[125769263, 125770163]]
NM_001134793	[[125756954, 125757660], [125761317, 125761367], [125769238, 125770541]]	[[125769263, 125770163]]

Promoter

Chrom	Start	End	Description
chr11	125757510	125757519	CAGE_peak_3_at_HYLS1_5end
chr11	125757556	125757620	CAGE_peak_1_at_HYLS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I125890	125890168	125891271	0.67	[{'connected_gene': 'RPUSD4', 'score': 10.53}, {'connected_gene': 'PUS3', 'score': 7.29}, {'connected_gene': 'CHEK1', 'score': 6.12}, {'connected_gene': 'PIR58536', 'score': 0.77}, {'connected_gene': 'GC11P125889', 'score': 0.77}, {'connected_gene': 'PIR36090', 'score': 0.44}, {'connected_gene': 'HYLS1', 'score': 0.44}]
chr11	GH11I126317	126317184	126320389	1.34	[{'connected_gene': 'FOXRED1', 'score': 48.76}, {'connected_gene': 'ST3GAL4', 'score': 12.36}, {'connected_gene': 'TIRAP', 'score': 12.16}, {'connected_gene': 'ENSG00000254694', 'score': 10.88}, {'connected_gene': 'SRPRA', 'score': 10.37}, {'connected_gene': 'DCPS', 'score': 6.32}, {'connected_gene': 'FAM118B', 'score': 4.61}, {'connected_gene': 'HYLS1', 'score': 1.24}, {'connected_gene': 'HP11014', 'score': 0.39}, {'connected_gene': 'PIR55528', 'score': 0.34}]
chr11	GH11I125800	125800186	125800572	0.39	[{'connected_gene': 'DDX25', 'score': 38.66}, {'connected_gene': 'CHEK1', 'score': 7.78}, {'connected_gene': 'PATE4', 'score': 6.09}, {'connected_gene': 'HYLS1', 'score': 5.8}, {'connected_gene': 'PATE1', 'score': 3.58}, {'connected_gene': 'PATE2', 'score': 2.39}, {'connected_gene': 'GC11P125812', 'score': 0.39}, {'connected_gene': 'PATE3', 'score': 0.39}]
chr11	GH11I126305	126305605	126306106	0.88	[{'connected_gene': 'HP11014', 'score': 550.77}, {'connected_gene': 'FOXRED1', 'score': 39.48}, {'connected_gene': 'FAM118B', 'score': 26.98}, {'connected_gene': 'DCPS', 'score': 2.25}, {'connected_gene': 'HYLS1', 'score': 1.41}, {'connected_gene': 'PIR55528', 'score': 0.29}]
chr11	GH11I125874	125874626	125874775	0.66	[{'connected_gene': 'ENSG00000260209', 'score': 550.77}, {'connected_gene': 'PUS3', 'score': 10.48}, {'connected_gene': 'DDX25', 'score': 10.48}, {'connected_gene': 'PATE4', 'score': 10.09}, {'connected_gene': 'CHEK1', 'score': 6.43}, {'connected_gene': 'HYLS1', 'score': 0.44}]
chr11	GH11I125886	125886706	125888810	2.01	[{'connected_gene': 'GC11P125889', 'score': 550.77}, {'connected_gene': 'HYLS1', 'score': 550.77}, {'connected_gene': 'PIR58536', 'score': 550.77}, {'connected_gene': 'HP11014', 'score': 10.98}, {'connected_gene': 'TMEM218', 'score': 10.3}, {'connected_gene': 'STT3A', 'score': 9.96}, {'connected_gene': 'DDX25', 'score': 6.36}, {'connected_gene': 'CHEK1', 'score': 6.36}, {'connected_gene': 'PUS3', 'score': 4.62}, {'connected_gene': 'PIR36090', 'score': 0.39}]