PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000301770	[[61025761, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036551], [61039146, 61039232], [61040670, 61040788], [61041970, 61042056], [61044064, 61044152], [61045865, 61045948], [61048095, 61048189], [61048264, 61048707], [61049257, 61049386], [61050264, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062563]]	[[61049380, 61049386], [61050264, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062509]]
ENST00000335613	[[61025761, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036490], [61039146, 61039232], [61040670, 61040788], [61041970, 61042056], [61044064, 61044152], [61045865, 61045948], [61048095, 61048189], [61048264, 61048707], [61049257, 61049386], [61050260, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062896]]	[[61026146, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036490], [61039146, 61039232], [61040670, 61040788], [61041970, 61042056], [61044064, 61044152], [61045865, 61045948], [61048095, 61048189], [61048264, 61048707], [61049257, 61049386], [61050260, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062509]]
ENST00000535710	[[61026095, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036490], [61039146, 61039232], [61040670, 61040788], [61041179, 61041278]]	[[61026146, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036490], [61039146, 61039232], [61040670, 61040764]]
ENST00000538438	[[61026552, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036889]]	None
ENST00000398808	[[61038636, 61039232], [61040670, 61040791]]	None
ENST00000535599	[[61049969, 61050008], [61050260, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61059048], [61062399, 61062567]]	[[61058300, 61058399], [61058735, 61059048], [61062399, 61062509]]
ENST00000538579	[[61053734, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062498]]	None
NM_152718	[[61025757, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036490], [61039146, 61039232], [61040670, 61040788], [61041970, 61042056], [61044064, 61044152], [61045865, 61045948], [61048095, 61048189], [61048264, 61048707], [61049257, 61049386], [61050260, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062788]]	[[61026146, 61026784], [61031958, 61032049], [61032427, 61032510], [61032593, 61032684], [61034933, 61035016], [61036393, 61036490], [61039146, 61039232], [61040670, 61040788], [61041970, 61042056], [61044064, 61044152], [61045865, 61045948], [61048095, 61048189], [61048264, 61048707], [61049257, 61049386], [61050260, 61050377], [61053785, 61053902], [61058270, 61058399], [61058735, 61058825], [61058953, 61059048], [61062399, 61062509]]

Promoter

Chrom	Start	End	Description
chr11	61062737	61062756	CAGE_peak_3_at_VWCE_5end
chr11	61062762	61062809	CAGE_peak_1_at_VWCE_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I061693	61693679	61702169	2.14	[{'connected_gene': 'DAGLA', 'score': 567.51}, {'connected_gene': 'MYRF', 'score': 20.92}, {'connected_gene': 'DKFZP434K028', 'score': 19.36}, {'connected_gene': 'SYT7', 'score': 11.01}, {'connected_gene': 'FTH1', 'score': 9.15}, {'connected_gene': 'CYB561A3', 'score': 7.63}, {'connected_gene': 'VWCE', 'score': 4.66}, {'connected_gene': 'SDHAF2', 'score': 4.48}, {'connected_gene': 'DDB1', 'score': 4.33}, {'connected_gene': 'CPSF7', 'score': 4.26}, {'connected_gene': 'PIR41833', 'score': 0.25}]
chr11	GH11I061686	61686122	61687144	0.2	[{'connected_gene': 'MYRF', 'score': 12.26}, {'connected_gene': 'DKFZP434K028', 'score': 4.82}, {'connected_gene': 'VWCE', 'score': 4.72}, {'connected_gene': 'DAGLA', 'score': 0.44}, {'connected_gene': 'PIR41833', 'score': 0.22}]
chr11	GH11I061279	61279708	61281018	0.31	[{'connected_gene': 'TKFC', 'score': 11.14}, {'connected_gene': 'DDB1', 'score': 11.11}, {'connected_gene': 'TMEM216', 'score': 10.61}, {'connected_gene': 'VWCE', 'score': 0.37}, {'connected_gene': 'PGA5', 'score': 0.28}]
chr11	GH11I061281	61281201	61281400	0.46	[{'connected_gene': 'TKFC', 'score': 11.14}, {'connected_gene': 'DDB1', 'score': 11.11}, {'connected_gene': 'TMEM216', 'score': 10.61}, {'connected_gene': 'VWCE', 'score': 0.39}, {'connected_gene': 'PGA5', 'score': 0.26}]
chr11	GH11I061282	61281414	61282335	0.9	[{'connected_gene': 'TKFC', 'score': 11.14}, {'connected_gene': 'DDB1', 'score': 11.11}, {'connected_gene': 'TMEM216', 'score': 10.62}, {'connected_gene': 'VWCE', 'score': 0.39}, {'connected_gene': 'PGA5', 'score': 0.26}]
chr11	GH11I061293	61293430	61296045	1.95	[{'connected_gene': 'VWCE', 'score': 550.77}, {'connected_gene': 'PGA5', 'score': 0.23}]
chr11	GH11I061256	61256849	61256998	0.2	[{'connected_gene': 'VWCE', 'score': 11.49}, {'connected_gene': 'DDB1', 'score': 11.38}, {'connected_gene': 'TKFC', 'score': 10.78}, {'connected_gene': 'PGA5', 'score': 0.37}]
chr11	GH11I061267	61267549	61267698	0.82	[{'connected_gene': 'VWCE', 'score': 12.35}, {'connected_gene': 'DDB1', 'score': 12.23}, {'connected_gene': 'TKFC', 'score': 10.87}, {'connected_gene': 'PGA5', 'score': 0.31}]
chr11	GH11I061254	61254529	61254678	0.71	[{'connected_gene': 'VWCE', 'score': 11.48}, {'connected_gene': 'DDB1', 'score': 11.38}, {'connected_gene': 'TKFC', 'score': 10.78}, {'connected_gene': 'PGA5', 'score': 0.39}]
chr11	GH11I061265	61265094	61265887	0.75	[{'connected_gene': 'VWCE', 'score': 12.35}, {'connected_gene': 'DDB1', 'score': 12.22}, {'connected_gene': 'TKFC', 'score': 10.87}, {'connected_gene': 'PGA5', 'score': 0.34}]
chr11	GH11I061250	61250909	61251038	0.2	[{'connected_gene': 'DDB1', 'score': 11.36}, {'connected_gene': 'CD6', 'score': 10.66}, {'connected_gene': 'TKFC', 'score': 10.65}, {'connected_gene': 'PGA5', 'score': 0.44}, {'connected_gene': 'VWCE', 'score': 0.26}]
chr11	GH11I061270	61270589	61270801	0.74	[{'connected_gene': 'DDB1', 'score': 12.1}, {'connected_gene': 'TKFC', 'score': 11.8}, {'connected_gene': 'TMEM216', 'score': 10.58}, {'connected_gene': 'RNU6-933P', 'score': 10.29}, {'connected_gene': 'VWCE', 'score': 0.34}, {'connected_gene': 'PGA5', 'score': 0.31}]
chr11	GH11I061296	61296993	61299987	1.3	[{'connected_gene': 'PIR45270', 'score': 550.77}, {'connected_gene': 'VWCE', 'score': 0.77}, {'connected_gene': 'DDB1', 'score': 0.26}]