PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000360067	[[7753643, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764262, 7764281]]	[[7754078, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764262, 7764281]]
ENST00000597312	[[7753659, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763740], [7764624, 7764731], [7764860, 7764969]]	None
ENST00000346664	[[7753661, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764731], [7766904, 7767032]]	[[7754078, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764646]]
ENST00000597921	[[7753666, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764731], [7766900, 7766997]]	[[7754078, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764646]]
ENST00000598803	[[7753667, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763740], [7764624, 7764731], [7766900, 7766979]]	None
ENST00000597934	[[7753829, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764731], [7766900, 7767017]]	None
ENST00000593418	[[7755372, 7755443], [7761710, 7761800], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764970]]	[[7755372, 7755443], [7761710, 7761800], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764646]]
NM_001207019	[[7753642, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764262, 7764365]]	[[7754078, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764262, 7764281]]
NM_001220500	[[7753642, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764731], [7766900, 7767032]]	[[7754078, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764646]]
NM_002002	[[7753642, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764731], [7766904, 7767032]]	[[7754078, 7754316], [7755044, 7755151], [7755291, 7755443], [7761710, 7761800], [7761898, 7761961], [7762121, 7762184], [7762412, 7762475], [7763241, 7763295], [7763626, 7763740], [7764624, 7764646]]

Promoter

Chrom	Start	End	Description
chr19	7764283	7764297	CAGE_peak_4_at_FCER2_5end
chr19	7764314	7764346	CAGE_peak_2_at_FCER2_5end
chr19	7764350	7764361	CAGE_peak_5_at_FCER2_5end
chr19	7764857	7764877	CAGE_peak_11_at_FCER2_5end
chr19	7764879	7764897	CAGE_peak_8_at_FCER2_5end
chr19	7764904	7764925	CAGE_peak_6_at_FCER2_5end
chr19	7764960	7764967	CAGE_peak_13_at_FCER2_5end
chr19	7764975	7764994	CAGE_peak_7_at_FCER2_5end
chr19	7765022	7765029	CAGE_peak_14_at_FCER2_5end
chr19	7765061	7765070	CAGE_peak_10_at_FCER2_5end
chr19	7766958	7766972	CAGE_peak_3_at_FCER2_5end
chr19	7766976	7766982	CAGE_peak_9_at_FCER2_5end
chr19	7766987	7766989	CAGE_peak_16_at_FCER2_5end
chr19	7766991	7767038	CAGE_peak_1_at_FCER2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I007336	7336168	7339146	1.45	[{'connected_gene': 'KHSRP', 'score': 11.9}, {'connected_gene': 'XAB2', 'score': 10.55}, {'connected_gene': 'MAP2K7', 'score': 10.37}, {'connected_gene': 'GTF2F1', 'score': 9.95}, {'connected_gene': 'FCER2', 'score': 2.87}, {'connected_gene': 'GC19P007345', 'score': 0.44}, {'connected_gene': 'INSR', 'score': 0.26}]
chr19	GH19I007779	7779293	7780464	0.57	[{'connected_gene': 'CLEC4GP1', 'score': 13.1}, {'connected_gene': 'RPL21P129', 'score': 12.74}, {'connected_gene': 'CD209', 'score': 12.72}, {'connected_gene': 'CLEC4G', 'score': 12.59}, {'connected_gene': 'FCER2', 'score': 12.21}, {'connected_gene': 'TRAPPC5', 'score': 12.01}, {'connected_gene': 'MCEMP1', 'score': 12.0}, {'connected_gene': 'ZNF414', 'score': 10.79}, {'connected_gene': 'LOC105372263', 'score': 0.44}, {'connected_gene': 'GC19P007785', 'score': 0.44}]
chr19	GH19I007714	7714170	7715443	0.71	[{'connected_gene': 'CD209', 'score': 17.03}, {'connected_gene': 'TRAPPC5', 'score': 13.16}, {'connected_gene': 'MCEMP1', 'score': 13.14}, {'connected_gene': 'RPL21P129', 'score': 11.88}, {'connected_gene': 'CAMSAP3', 'score': 10.87}, {'connected_gene': 'CLEC4G', 'score': 6.8}, {'connected_gene': 'FCER2', 'score': 6.09}, {'connected_gene': 'XAB2', 'score': 5.54}, {'connected_gene': 'LOC105372262', 'score': 0.44}]
chr19	GH19I007344	7344390	7351407	2.02	[{'connected_gene': 'ARHGEF18', 'score': 552.39}, {'connected_gene': 'ENSG00000263264', 'score': 550.77}, {'connected_gene': 'FCER2', 'score': 7.31}, {'connected_gene': 'ZNF557', 'score': 5.53}, {'connected_gene': 'GC19P007345', 'score': 0.77}]
chr19	GH19I007700	7700966	7708009	2.08	[{'connected_gene': 'FCER2', 'score': 567.12}, {'connected_gene': 'STXBP2', 'score': 17.49}, {'connected_gene': 'ELAVL1', 'score': 14.53}, {'connected_gene': 'HNRNPM', 'score': 13.56}, {'connected_gene': 'XAB2', 'score': 12.91}, {'connected_gene': 'PEX11G', 'score': 12.81}, {'connected_gene': 'MAP2K7', 'score': 12.54}, {'connected_gene': 'CD209', 'score': 12.41}, {'connected_gene': 'CLEC4G', 'score': 12.41}, {'connected_gene': 'RPL21P129', 'score': 12.4}, {'connected_gene': 'MCEMP1', 'score': 10.33}, {'connected_gene': 'MCOLN1', 'score': 10.02}, {'connected_gene': 'PNPLA6', 'score': 5.73}, {'connected_gene': 'RAB11B-AS1', 'score': 5.45}, {'connected_gene': 'ARHGEF18', 'score': 4.88}, {'connected_gene': 'RETN', 'score': 1.51}, {'connected_gene': 'LOC105372262', 'score': 0.77}, {'connected_gene': 'GC19P007703', 'score': 0.44}]
chr19	GH19I007690	7690529	7693329	1.31	[{'connected_gene': 'FCER2', 'score': 14.82}, {'connected_gene': 'HNRNPM', 'score': 10.28}, {'connected_gene': 'STXBP2', 'score': 9.92}, {'connected_gene': 'ARHGEF18', 'score': 4.9}, {'connected_gene': 'MAP2K7', 'score': 1.65}, {'connected_gene': 'EVI5L', 'score': 1.51}, {'connected_gene': 'FBN3', 'score': 1.31}, {'connected_gene': 'GC19P007703', 'score': 0.77}, {'connected_gene': 'TRAPPC5', 'score': 0.39}]
chr19	GH19I007698	7698601	7700602	1.78	[{'connected_gene': 'FCER2', 'score': 567.64}, {'connected_gene': 'ELAVL1', 'score': 33.97}, {'connected_gene': 'HNRNPM', 'score': 25.08}, {'connected_gene': 'XAB2', 'score': 21.55}, {'connected_gene': 'MAP2K7', 'score': 10.27}, {'connected_gene': 'GC19P007703', 'score': 0.77}]
chr19	GH19I007689	7689001	7689600	0.2	[{'connected_gene': 'TRAPPC5', 'score': 0.44}, {'connected_gene': 'GC19P007703', 'score': 0.44}, {'connected_gene': 'FCER2', 'score': 0.39}]
chr19	GH19I007772	7772601	7773400	0.99	[{'connected_gene': 'RPL21P129', 'score': 13.29}, {'connected_gene': 'CD209', 'score': 13.26}, {'connected_gene': 'FCER2', 'score': 12.28}, {'connected_gene': 'CLEC4G', 'score': 11.89}, {'connected_gene': 'CLEC4GP1', 'score': 9.52}, {'connected_gene': 'LOC105372263', 'score': 0.77}, {'connected_gene': 'GC19P007785', 'score': 0.39}]
chr19	GH19I007751	7751275	7751681	0.84	[{'connected_gene': 'RPL21P129', 'score': 550.77}, {'connected_gene': 'GC19P007750', 'score': 550.77}, {'connected_gene': 'CLEC4M', 'score': 5.11}, {'connected_gene': 'FCER2', 'score': 1.79}, {'connected_gene': 'XAB2', 'score': 1.4}]
chr19	GH19I007694	7694091	7695409	0.85	[{'connected_gene': 'GC19P007703', 'score': 550.77}, {'connected_gene': 'FCER2', 'score': 7.46}, {'connected_gene': 'TRAPPC5', 'score': 6.64}]