PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000340611	[[2577510, 2578398], [2578812, 2578985], [2579177, 2579276], [2579419, 2579522], [2580612, 2580686], [2580931, 2581118], [2581351, 2581470], [2581753, 2581845], [2582837, 2582957], [2583223, 2583596], [2584542, 2584690], [2586957, 2587112], [2593938, 2594081], [2595120, 2595361]]	[[2577702, 2578398], [2578812, 2578985], [2579177, 2579276], [2579419, 2579522], [2580612, 2580686], [2580931, 2581118], [2581351, 2581470], [2581753, 2581845], [2582837, 2582957], [2583223, 2583596], [2584542, 2584690], [2586957, 2587112], [2593938, 2594065]]
ENST00000493232	[[2577514, 2578398], [2579177, 2581118], [2581351, 2583886]]	None
ENST00000467558	[[2577514, 2578985], [2579177, 2579276], [2579419, 2580686], [2580931, 2581118], [2581351, 2581470], [2581753, 2581845], [2582837, 2583596], [2584542, 2584690], [2586957, 2587112], [2593938, 2594081]]	None
ENST00000469750	[[2577514, 2578398], [2578812, 2578985], [2579177, 2579276], [2579419, 2580686], [2580931, 2581118], [2581351, 2581470], [2581753, 2583596], [2584542, 2584690], [2586957, 2587112], [2593938, 2594081], [2595120, 2595328]]	None
ENST00000473879	[[2578045, 2578398], [2579177, 2579276], [2579419, 2579522], [2580463, 2580528], [2580612, 2580658]]	None
ENST00000421712	[[2581814, 2581845], [2582837, 2582957], [2583223, 2583596], [2586957, 2587112], [2593938, 2594082]]	[[2583371, 2583596], [2586957, 2587112], [2593938, 2594065]]
NM_152743	[[2577443, 2578398], [2578812, 2578985], [2579177, 2579276], [2579419, 2579522], [2580612, 2580686], [2580931, 2581118], [2581351, 2581470], [2581753, 2581845], [2582837, 2582957], [2583223, 2583596], [2584542, 2584690], [2586957, 2587112], [2593938, 2594081], [2595120, 2595392]]	[[2577702, 2578398], [2578812, 2578985], [2579177, 2579276], [2579419, 2579522], [2580612, 2580686], [2580931, 2581118], [2581351, 2581470], [2581753, 2581845], [2582837, 2582957], [2583223, 2583596], [2584542, 2584690], [2586957, 2587112], [2593938, 2594065]]

Promoter

Chrom	Start	End	Description
chr7	2595112	2595126	CAGE_peak_2_at_BRAT1_5end
chr7	2595129	2595165	CAGE_peak_1_at_BRAT1_5end
chr7	2595171	2595185	CAGE_peak_3_at_BRAT1_5end
chr7	2595337	2595360	CAGE_peak_5_at_BRAT1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I002408	2408602	2410930	0.99	[{'connected_gene': 'EIF3B', 'score': 17.99}, {'connected_gene': 'CHST12', 'score': 13.16}, {'connected_gene': 'LOC645357', 'score': 13.11}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'GC07P002406', 'score': 0.77}, {'connected_gene': 'GRIFIN', 'score': 0.2}]
chr7	GH07I002352	2352969	2356954	2.29	[{'connected_gene': 'EIF3B', 'score': 592.61}, {'connected_gene': 'SNX8', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 22.59}, {'connected_gene': 'GC07M002353', 'score': 0.77}]
chr7	GH07I003193	3193435	3195916	0.97	[{'connected_gene': 'CARD11', 'score': 19.63}, {'connected_gene': 'BRAT1', 'score': 15.11}, {'connected_gene': 'CHST12', 'score': 11.91}, {'connected_gene': 'EIF3B', 'score': 11.64}, {'connected_gene': 'LOC105375132', 'score': 10.55}, {'connected_gene': 'SDK1', 'score': 10.55}, {'connected_gene': 'LOC100129603', 'score': 5.47}, {'connected_gene': 'NUDT1', 'score': 4.46}, {'connected_gene': 'ENSG00000231892', 'score': 0.77}, {'connected_gene': 'GC07P003179', 'score': 0.39}]
chr7	GH07I003066	3066687	3071542	0.97	[{'connected_gene': 'CARD11', 'score': 16.01}, {'connected_gene': 'LOC101927256', 'score': 10.92}, {'connected_gene': 'BRAT1', 'score': 10.34}, {'connected_gene': 'CHST12', 'score': 10.26}, {'connected_gene': 'GC07M003056', 'score': 0.39}, {'connected_gene': 'ENSG00000228334', 'score': 0.37}]
chr7	GH07I002626	2626276	2642973	2.79	[{'connected_gene': 'TTYH3', 'score': 614.83}, {'connected_gene': 'LFNG', 'score': 16.06}, {'connected_gene': 'AMZ1', 'score': 12.61}, {'connected_gene': 'CHST12', 'score': 12.3}, {'connected_gene': 'BRAT1', 'score': 11.56}, {'connected_gene': 'EIF3B', 'score': 10.27}, {'connected_gene': 'IQCE', 'score': 6.61}, {'connected_gene': 'SNX8', 'score': 2.69}]
chr7	GH07I002601	2601207	2601356	0.43	[{'connected_gene': 'TTYH3', 'score': 16.94}, {'connected_gene': 'BRAT1', 'score': 11.48}, {'connected_gene': 'IQCE', 'score': 5.91}, {'connected_gene': 'GC07P002574', 'score': 0.31}]
chr7	GH07I002606	2606744	2610361	1.27	[{'connected_gene': 'TTYH3', 'score': 29.52}, {'connected_gene': 'BRAT1', 'score': 23.92}, {'connected_gene': 'AMZ1', 'score': 12.33}, {'connected_gene': 'CHST12', 'score': 11.95}, {'connected_gene': 'IQCE', 'score': 8.82}, {'connected_gene': 'LFNG', 'score': 3.08}, {'connected_gene': 'SNX8', 'score': 2.28}, {'connected_gene': 'GC07P002574', 'score': 0.29}]
chr7	GH07I002619	2619835	2625654	1.64	[{'connected_gene': 'TTYH3', 'score': 16.66}, {'connected_gene': 'AMZ1', 'score': 12.31}, {'connected_gene': 'IQCE', 'score': 11.79}, {'connected_gene': 'BRAT1', 'score': 11.78}, {'connected_gene': 'GC07P002574', 'score': 0.25}]
chr7	GH07I001575	1575717	1577709	0.92	[{'connected_gene': 'MAFK', 'score': 13.19}, {'connected_gene': 'BRAT1', 'score': 12.53}, {'connected_gene': 'DNAAF5', 'score': 11.6}, {'connected_gene': 'ENSG00000231927', 'score': 11.0}, {'connected_gene': 'INTS1', 'score': 10.98}, {'connected_gene': 'EIF3B', 'score': 10.93}, {'connected_gene': 'SUN1', 'score': 9.93}, {'connected_gene': 'PSMG3-AS1', 'score': 8.97}, {'connected_gene': 'ELFN1', 'score': 4.35}, {'connected_gene': 'PSMG3', 'score': 0.44}, {'connected_gene': 'GC07P001567', 'score': 0.44}, {'connected_gene': 'LOC105375122', 'score': 0.37}]
chr7	GH07I002411	2411597	2413235	1	[{'connected_gene': 'LOC645357', 'score': 13.09}, {'connected_gene': 'EIF3B', 'score': 13.02}, {'connected_gene': 'CHST12', 'score': 11.89}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'GC07P002406', 'score': 0.44}, {'connected_gene': 'GRIFIN', 'score': 0.21}]
chr7	GH07I002413	2413546	2413695	0.54	[{'connected_gene': 'LOC645357', 'score': 13.09}, {'connected_gene': 'EIF3B', 'score': 13.02}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'GC07P002406', 'score': 0.44}, {'connected_gene': 'CHST12', 'score': 0.39}, {'connected_gene': 'GRIFIN', 'score': 0.21}]
chr7	GH07I002362	2362453	2363490	0.31	[{'connected_gene': 'CHST12', 'score': 12.78}, {'connected_gene': 'EIF3B', 'score': 12.47}, {'connected_gene': 'MAD1L1', 'score': 11.27}, {'connected_gene': 'MRM2', 'score': 11.27}, {'connected_gene': 'NUDT1', 'score': 11.27}, {'connected_gene': 'BRAT1', 'score': 10.43}, {'connected_gene': 'GC07P002359', 'score': 0.77}, {'connected_gene': 'PIR35679', 'score': 0.39}, {'connected_gene': 'GC07M002361', 'score': 0.39}]
chr7	GH07I002402	2402752	2407779	2.04	[{'connected_gene': 'CHST12', 'score': 563.32}, {'connected_gene': 'GC07P002406', 'score': 550.77}, {'connected_gene': 'EIF3B', 'score': 20.18}, {'connected_gene': 'LOC645357', 'score': 13.14}, {'connected_gene': 'BRAT1', 'score': 11.0}]
chr7	GH07I002438	2438246	2439160	0.2	[{'connected_gene': 'CHST12', 'score': 21.78}, {'connected_gene': 'LOC645357', 'score': 12.08}, {'connected_gene': 'EIF3B', 'score': 12.04}, {'connected_gene': 'LFNG', 'score': 12.01}, {'connected_gene': 'BRAT1', 'score': 11.12}, {'connected_gene': 'IQCE', 'score': 11.12}, {'connected_gene': 'GC07P002406', 'score': 0.29}, {'connected_gene': 'GRIFIN', 'score': 0.28}]
chr7	GH07I001950	1950791	1951915	1.23	[{'connected_gene': 'CHST12', 'score': 10.5}, {'connected_gene': 'MRM2', 'score': 10.41}, {'connected_gene': 'BRAT1', 'score': 10.12}, {'connected_gene': 'MAFK', 'score': 7.46}, {'connected_gene': 'SNX8', 'score': 4.87}, {'connected_gene': 'GC07P001949', 'score': 0.77}, {'connected_gene': 'GC07M001985', 'score': 0.28}, {'connected_gene': 'MAD1L1', 'score': 0.06}]
chr7	GH07I002451	2451151	2452975	1.09	[{'connected_gene': 'CHST12', 'score': 12.25}, {'connected_gene': 'BRAT1', 'score': 12.22}, {'connected_gene': 'IQCE', 'score': 12.22}, {'connected_gene': 'LOC645357', 'score': 12.2}, {'connected_gene': 'EIF3B', 'score': 12.16}, {'connected_gene': 'SNX8', 'score': 11.81}, {'connected_gene': 'TTYH3', 'score': 11.76}, {'connected_gene': 'AMZ1', 'score': 11.74}, {'connected_gene': 'LFNG', 'score': 7.44}, {'connected_gene': 'GRIFIN', 'score': 0.34}, {'connected_gene': 'GC07P002406', 'score': 0.25}]
chr7	GH07I002487	2487498	2489041	0.66	[{'connected_gene': 'LFNG', 'score': 22.91}, {'connected_gene': 'TTYH3', 'score': 11.76}, {'connected_gene': 'AMZ1', 'score': 11.67}, {'connected_gene': 'BRAT1', 'score': 11.31}, {'connected_gene': 'GRIFIN', 'score': 0.39}]
chr7	GH07I002439	2439975	2442122	0.75	[{'connected_gene': 'LFNG', 'score': 12.01}, {'connected_gene': 'BRAT1', 'score': 10.87}, {'connected_gene': 'GC07P002406', 'score': 0.29}, {'connected_gene': 'CHST12', 'score': 0.28}, {'connected_gene': 'GRIFIN', 'score': 0.28}]
chr7	GH07I002444	2444606	2444755	0.2	[{'connected_gene': 'LFNG', 'score': 12.02}, {'connected_gene': 'BRAT1', 'score': 10.87}, {'connected_gene': 'GRIFIN', 'score': 0.29}, {'connected_gene': 'GC07P002406', 'score': 0.28}, {'connected_gene': 'CHST12', 'score': 0.26}]
chr7	GH07I002445	2444400	2444601	0.2	[{'connected_gene': 'LFNG', 'score': 12.02}, {'connected_gene': 'BRAT1', 'score': 10.87}, {'connected_gene': 'GRIFIN', 'score': 0.29}, {'connected_gene': 'GC07P002406', 'score': 0.28}, {'connected_gene': 'CHST12', 'score': 0.26}]
chr7	GH07I002507	2507706	2513728	2.12	[{'connected_gene': 'LFNG', 'score': 561.6}, {'connected_gene': 'BRAT1', 'score': 6.52}, {'connected_gene': 'GRIFIN', 'score': 0.29}]
chr7	GH07I002515	2515322	2533399	2.75	[{'connected_gene': 'LFNG', 'score': 571.55}, {'connected_gene': 'BRAT1', 'score': 11.25}, {'connected_gene': 'IQCE', 'score': 1.86}, {'connected_gene': 'MIR4648', 'score': 0.77}, {'connected_gene': 'GC07P002527', 'score': 0.77}]
chr7	GH07I002241	2241219	2243532	2.03	[{'connected_gene': 'MRM2', 'score': 562.76}, {'connected_gene': 'PIR43450', 'score': 550.77}, {'connected_gene': 'NUDT1', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 11.82}, {'connected_gene': 'EIF3B', 'score': 10.7}, {'connected_gene': 'SNX8', 'score': 5.59}]
chr7	GH07I002309	2309426	2315131	2.32	[{'connected_gene': 'SNX8', 'score': 571.98}, {'connected_gene': 'MRM2', 'score': 12.35}, {'connected_gene': 'NUDT1', 'score': 12.35}, {'connected_gene': 'MAD1L1', 'score': 12.34}, {'connected_gene': 'CHST12', 'score': 10.61}, {'connected_gene': 'BRAT1', 'score': 10.16}, {'connected_gene': 'GC07P002305', 'score': 0.44}, {'connected_gene': 'GC07M002345', 'score': 0.28}]
chr7	GH07I002841	2841419	2846019	2.18	[{'connected_gene': 'GNA12', 'score': 575.0}, {'connected_gene': 'EIF3B', 'score': 23.11}, {'connected_gene': 'BRAT1', 'score': 10.77}, {'connected_gene': 'LOC100131264', 'score': 0.44}]
chr7	GH07I002756	2756258	2764928	2.28	[{'connected_gene': 'GNA12', 'score': 579.59}, {'connected_gene': 'BRAT1', 'score': 40.18}, {'connected_gene': 'CHST12', 'score': 29.98}, {'connected_gene': 'EIF3B', 'score': 20.37}, {'connected_gene': 'AMZ1', 'score': 18.85}, {'connected_gene': 'LFNG', 'score': 11.75}, {'connected_gene': 'TTYH3', 'score': 11.17}, {'connected_gene': 'SNX8', 'score': 1.76}, {'connected_gene': 'GC07M002729', 'score': 0.29}, {'connected_gene': 'PIR32151', 'score': 0.22}]
chr7	GH07I002727	2727716	2736079	1.61	[{'connected_gene': 'GNA12', 'score': 29.62}, {'connected_gene': 'BRAT1', 'score': 23.12}, {'connected_gene': 'CHST12', 'score': 10.85}, {'connected_gene': 'AMZ1', 'score': 7.25}, {'connected_gene': 'LFNG', 'score': 3.79}, {'connected_gene': 'SNX8', 'score': 1.49}, {'connected_gene': 'GC07M002729', 'score': 0.77}, {'connected_gene': 'PIR32151', 'score': 0.17}]
chr7	GH07I002873	2873154	2874744	1.03	[{'connected_gene': 'GNA12', 'score': 15.88}, {'connected_gene': 'BRAT1', 'score': 11.69}, {'connected_gene': 'SDK1', 'score': 10.31}, {'connected_gene': 'LOC105375132', 'score': 10.31}, {'connected_gene': 'CARD11', 'score': 10.18}, {'connected_gene': 'GC07P002880', 'score': 0.44}]
chr7	GH07I002818	2818164	2826928	1.64	[{'connected_gene': 'GNA12', 'score': 28.37}, {'connected_gene': 'BRAT1', 'score': 16.54}, {'connected_gene': 'LOC101927256', 'score': 10.45}, {'connected_gene': 'LFNG', 'score': 7.25}, {'connected_gene': 'NUDT1', 'score': 5.1}, {'connected_gene': 'PIR32151', 'score': 0.77}, {'connected_gene': 'LOC100131264', 'score': 0.39}]
chr7	GH07I002557	2557875	2560613	1.98	[{'connected_gene': 'IQCE', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 8.29}, {'connected_gene': 'GC07P002574', 'score': 0.37}]
chr7	GH07I002553	2553963	2556639	2	[{'connected_gene': 'BRAT1', 'score': 571.41}, {'connected_gene': 'EIF3B', 'score': 10.99}, {'connected_gene': 'PIR48387', 'score': 0.39}]
chr7	GH07I002496	2496027	2496216	0.43	[{'connected_gene': 'BRAT1', 'score': 11.36}, {'connected_gene': 'LFNG', 'score': 0.37}, {'connected_gene': 'GRIFIN', 'score': 0.37}]
chr7	GH07I002686	2686847	2689800	1.74	[{'connected_gene': 'AMZ1', 'score': 564.29}, {'connected_gene': 'BRAT1', 'score': 12.62}, {'connected_gene': 'EIF3B', 'score': 10.96}, {'connected_gene': 'GC07P002723', 'score': 0.29}]
chr7	GH07I002616	2616336	2619605	1.34	[{'connected_gene': 'AMZ1', 'score': 12.3}, {'connected_gene': 'BRAT1', 'score': 10.83}, {'connected_gene': 'TTYH3', 'score': 5.1}, {'connected_gene': 'IQCE', 'score': 1.62}, {'connected_gene': 'GC07P002574', 'score': 0.26}]
chr7	GH07I002610	2610441	2615237	1.19	[{'connected_gene': 'AMZ1', 'score': 12.34}, {'connected_gene': 'BRAT1', 'score': 11.59}, {'connected_gene': 'IQCE', 'score': 6.54}, {'connected_gene': 'TTYH3', 'score': 5.34}, {'connected_gene': 'GC07P002574', 'score': 0.28}]
chr7	GH07I002680	2680987	2681156	0.89	[{'connected_gene': 'AMZ1', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 10.51}, {'connected_gene': 'GC07P002723', 'score': 0.26}]
chr7	GH07I001741	1741241	1745587	1.16	[{'connected_gene': 'ELFN1-AS1', 'score': 555.09}, {'connected_gene': 'BRAT1', 'score': 11.76}, {'connected_gene': 'NUDT1', 'score': 5.47}, {'connected_gene': 'GC07P001739', 'score': 0.77}, {'connected_gene': 'PIR40429', 'score': 0.21}, {'connected_gene': 'ELFN1', 'score': 0.18}]
chr7	GH07I001841	1841809	1845267	0.79	[{'connected_gene': 'MIR4655', 'score': 550.77}, {'connected_gene': 'EIF3B', 'score': 11.95}, {'connected_gene': 'CHST12', 'score': 10.95}, {'connected_gene': 'BRAT1', 'score': 10.31}, {'connected_gene': 'LOC100127955', 'score': 7.14}, {'connected_gene': 'NUDT1', 'score': 5.01}, {'connected_gene': 'MRM2', 'score': 4.84}, {'connected_gene': 'TMEM184A', 'score': 4.6}, {'connected_gene': 'IQCE', 'score': 4.37}, {'connected_gene': 'GC07M001835', 'score': 0.77}, {'connected_gene': 'MAD1L1', 'score': 0.05}]
chr7	GH07I002409	2408406	2408555	0.38	[{'connected_gene': 'GC07P002406', 'score': 550.77}, {'connected_gene': 'LOC645357', 'score': 13.11}, {'connected_gene': 'EIF3B', 'score': 13.03}, {'connected_gene': 'BRAT1', 'score': 11.01}, {'connected_gene': 'CHST12', 'score': 0.77}, {'connected_gene': 'GRIFIN', 'score': 0.2}]
chr7	GH07I002542	2542996	2544282	0.31	[{'connected_gene': 'PIR48387', 'score': 550.77}, {'connected_gene': 'BRAT1', 'score': 10.24}, {'connected_gene': 'GC07P002527', 'score': 0.37}]
chr7	GH07I002539	2539390	2540012	0.56	[{'connected_gene': 'PIR48387', 'score': 0.77}, {'connected_gene': 'GC07P002527', 'score': 0.39}, {'connected_gene': 'BRAT1', 'score': 0.37}]