PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000302287	[[54610017, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54620224]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617964]]
ENST00000407838	[[54610017, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636701, 54638773]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636701, 54636778]]
ENST00000495904	[[54610018, 54610502], [54612314, 54612481], [54614639, 54614853]]	None
ENST00000404951	[[54610108, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54621559, 54621766], [54636823, 54638188]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54621559, 54621766], [54636823, 54636912]]
ENST00000402026	[[54610140, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54620220]]	[[54610426, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617964]]
ENST00000402613	[[54610297, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636823, 54637139]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636823, 54636912]]
ENST00000498834	[[54613853, 54613909], [54614639, 54614690], [54617526, 54617863], [54636823, 54637182]]	None
ENST00000466888	[[54614364, 54614432], [54614639, 54614690], [54617526, 54617863], [54636701, 54636980]]	None
ENST00000469952	[[54614685, 54614690], [54617526, 54617863], [54618445, 54618612]]	None
NM_001317843	[[54610017, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54620224]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617964]]
NM_001301009	[[54610017, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636823, 54638773]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636823, 54636912]]
NM_182546	[[54610017, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636701, 54638773]]	[[54610423, 54610502], [54612314, 54612481], [54614639, 54614690], [54617526, 54617863], [54636701, 54636778]]
NR_133927	[[54613856, 54613909], [54614639, 54614690], [54617526, 54617863], [54636823, 54638773]]	None

Promoter

Chrom	Start	End	Description
chr7	54609687	54609702	CAGE_peak_10_at_VSTM2A_5end
chr7	54609741	54609751	CAGE_peak_17_at_VSTM2A_5end
chr7	54609764	54609789	CAGE_peak_8_at_VSTM2A_5end
chr7	54609818	54609830	CAGE_peak_16_at_VSTM2A_5end
chr7	54609955	54609962	CAGE_peak_13_at_VSTM2A_5end
chr7	54609965	54609981	CAGE_peak_6_at_VSTM2A_5end
chr7	54609985	54609992	CAGE_peak_14_at_VSTM2A_5end
chr7	54609995	54610013	CAGE_peak_5_at_VSTM2A_5end
chr7	54610028	54610047	CAGE_peak_7_at_VSTM2A_5end
chr7	54610055	54610077	CAGE_peak_4_at_VSTM2A_5end
chr7	54610086	54610123	CAGE_peak_2_at_VSTM2A_5end
chr7	54610124	54610198	CAGE_peak_1_at_VSTM2A_5end
chr7	54610265	54610288	CAGE_peak_3_at_VSTM2A_5end
chr7	54610290	54610301	CAGE_peak_11_at_VSTM2A_5end
chr7	54610308	54610320	CAGE_peak_9_at_VSTM2A_5end
chr7	54610331	54610338	CAGE_peak_12_at_VSTM2A_5end
chr7	54610358	54610373	CAGE_peak_15_at_VSTM2A_5end
chr7	54614335	54614351	CAGE_peak_19_at_VSTM2A_5end
chr7	54614634	54614654	CAGE_peak_21_at_VSTM2A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I054541	54541785	54543428	1.35	[{'connected_gene': 'VSTM2A', 'score': 550.77}, {'connected_gene': 'VSTM2A-OT1', 'score': 0.39}]
chr7	GH07I054544	54544567	54547244	0.96	[{'connected_gene': 'VSTM2A', 'score': 0.77}, {'connected_gene': 'VSTM2A-OT1', 'score': 0.39}]
chr7	GH07I054291	54291950	54292872	0.43	[{'connected_gene': 'VSTM2A', 'score': 6.76}, {'connected_gene': 'GC07M054232', 'score': 0.37}, {'connected_gene': 'GC07P054271', 'score': 0.34}, {'connected_gene': 'LINC01445', 'score': 0.28}]