PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000305885	[[61560108, 61560500], [61562812, 61564716]]	[[61562833, 61563976]]
ENST00000535723	[[61560422, 61560682], [61562812, 61563328]]	[[61562833, 61563328]]
ENST00000535307	[[61563411, 61563868], [61564393, 61564704]]	[[61563411, 61563868], [61564393, 61564399]]
NM_004111	[[61560108, 61560500], [61562812, 61564716]]	[[61562833, 61563976]]

Promoter

Chrom	Start	End	Description
chr11	61560348	61560419	CAGE_peak_1_at_FEN1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I061826	61826073	61838665	2.77	[{'connected_gene': 'FADS2', 'score': 632.21}, {'connected_gene': 'MTA2', 'score': 16.23}, {'connected_gene': 'FADS1', 'score': 14.69}, {'connected_gene': 'TMEM138', 'score': 14.56}, {'connected_gene': 'EML3', 'score': 14.16}, {'connected_gene': 'STX5', 'score': 13.27}, {'connected_gene': 'CPSF7', 'score': 13.12}, {'connected_gene': 'NXF1', 'score': 12.41}, {'connected_gene': 'GANAB', 'score': 12.01}, {'connected_gene': 'TMEM179B', 'score': 11.85}, {'connected_gene': 'INTS5', 'score': 11.72}, {'connected_gene': 'CYB561A3', 'score': 11.46}, {'connected_gene': 'FADS3', 'score': 11.23}, {'connected_gene': 'CSKMT', 'score': 11.0}, {'connected_gene': 'LOC105369332', 'score': 10.41}, {'connected_gene': 'BEST1', 'score': 10.36}, {'connected_gene': 'TTC9C', 'score': 10.32}, {'connected_gene': 'UBXN1', 'score': 10.29}, {'connected_gene': 'POLR2G', 'score': 4.77}, {'connected_gene': 'FEN1', 'score': 2.15}, {'connected_gene': 'INCENP', 'score': 1.62}, {'connected_gene': 'PIR43939', 'score': 0.77}, {'connected_gene': 'MIR6746', 'score': 0.25}]
chr11	GH11I061819	61819697	61821435	0.87	[{'connected_gene': 'FADS2', 'score': 27.08}, {'connected_gene': 'TMEM258', 'score': 10.73}, {'connected_gene': 'FEN1', 'score': 10.73}, {'connected_gene': 'MIR611', 'score': 10.73}, {'connected_gene': 'MIR1908', 'score': 0.44}, {'connected_gene': 'PIR43939', 'score': 0.44}, {'connected_gene': 'FADS1', 'score': 0.44}]
chr11	GH11I061791	61791191	61794259	2.27	[{'connected_gene': 'FADS2', 'score': 583.16}, {'connected_gene': 'MIR611', 'score': 550.77}, {'connected_gene': 'FEN1', 'score': 550.77}, {'connected_gene': 'TMEM258', 'score': 550.77}, {'connected_gene': 'CPSF7', 'score': 45.31}, {'connected_gene': 'CSKMT', 'score': 43.36}, {'connected_gene': 'GANAB', 'score': 40.43}, {'connected_gene': 'TMEM138', 'score': 37.3}, {'connected_gene': 'EML3', 'score': 29.01}, {'connected_gene': 'TUT1', 'score': 28.93}, {'connected_gene': 'INTS5', 'score': 27.86}, {'connected_gene': 'TMEM109', 'score': 27.59}, {'connected_gene': 'RN7SL23P', 'score': 26.63}, {'connected_gene': 'MTA2', 'score': 23.47}, {'connected_gene': 'TAF6L', 'score': 20.06}, {'connected_gene': 'TMEM179B', 'score': 18.46}, {'connected_gene': 'UBXN1', 'score': 18.24}, {'connected_gene': 'SDHAF2', 'score': 12.72}, {'connected_gene': 'MIR1908', 'score': 12.24}, {'connected_gene': 'FADS1', 'score': 12.18}, {'connected_gene': 'EEF1G', 'score': 11.76}, {'connected_gene': 'VPS37C', 'score': 10.96}, {'connected_gene': 'BEST1', 'score': 10.61}, {'connected_gene': 'GC11P061758', 'score': 0.29}]
chr11	GH11I061796	61796829	61798814	1.21	[{'connected_gene': 'FADS2', 'score': 25.57}, {'connected_gene': 'FADS1', 'score': 11.86}, {'connected_gene': 'DKFZP434K028', 'score': 11.67}, {'connected_gene': 'BEST1', 'score': 10.6}, {'connected_gene': 'FEN1', 'score': 0.44}, {'connected_gene': 'MIR1908', 'score': 0.37}, {'connected_gene': 'GC11P061758', 'score': 0.28}]
chr11	GH11I061861	61861267	61864325	0.63	[{'connected_gene': 'FADS2', 'score': 23.17}, {'connected_gene': 'EEF1G', 'score': 6.31}, {'connected_gene': 'INCENP', 'score': 5.67}, {'connected_gene': 'FEN1', 'score': 5.36}, {'connected_gene': 'MIR6746', 'score': 0.37}, {'connected_gene': 'FADS1', 'score': 0.29}]
chr11	GH11I061869	61869496	61871918	1.61	[{'connected_gene': 'FADS2', 'score': 25.01}, {'connected_gene': 'EEF1G', 'score': 5.26}, {'connected_gene': 'FEN1', 'score': 5.07}, {'connected_gene': 'MIR6746', 'score': 0.44}, {'connected_gene': 'FADS1', 'score': 0.26}]
chr11	GH11I061731	61731896	61734041	1.1	[{'connected_gene': 'DAGLA', 'score': 16.92}, {'connected_gene': 'MYRF', 'score': 13.12}, {'connected_gene': 'DKFZP434K028', 'score': 12.6}, {'connected_gene': 'TMEM258', 'score': 11.65}, {'connected_gene': 'FEN1', 'score': 11.65}, {'connected_gene': 'MIR611', 'score': 11.65}, {'connected_gene': 'SYT7', 'score': 10.46}, {'connected_gene': 'PIR41833', 'score': 0.39}]
chr11	GH11I062024	62024108	62027020	1.87	[{'connected_gene': 'FTH1', 'score': 20.41}, {'connected_gene': 'BEST1', 'score': 11.31}, {'connected_gene': 'DAGLA', 'score': 8.05}, {'connected_gene': 'FEN1', 'score': 5.73}, {'connected_gene': 'TTC9C', 'score': 4.23}, {'connected_gene': 'RPS2P37', 'score': 0.39}, {'connected_gene': 'GC11P062053', 'score': 0.31}]
chr11	GH11I062424	62424318	62434799	1.44	[{'connected_gene': 'LOC102723765', 'score': 562.31}, {'connected_gene': 'ASRGL1', 'score': 22.42}, {'connected_gene': 'SCGB1A1', 'score': 11.49}, {'connected_gene': 'ENSG00000255126', 'score': 11.43}, {'connected_gene': 'ENSG00000250659', 'score': 11.32}, {'connected_gene': 'AHNAK', 'score': 11.3}, {'connected_gene': 'ENSG00000257058', 'score': 11.3}, {'connected_gene': 'EEF1G', 'score': 10.64}, {'connected_gene': 'ENSG00000255508', 'score': 10.62}, {'connected_gene': 'TUT1', 'score': 10.62}, {'connected_gene': 'FEN1', 'score': 5.22}, {'connected_gene': 'INCENP', 'score': 4.92}, {'connected_gene': 'BSCL2', 'score': 4.26}, {'connected_gene': 'GC11P062515', 'score': 0.17}]