Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000302053 [[155504277, 155505985], [155506689, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511918]] [[155505275, 155505985], [155506689, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511839]]
ENST00000403106 [[155506411, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511918]] [[155506645, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511839]]
NM_000508 [[155504277, 155505985], [155506689, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511918]] [[155505275, 155505985], [155506689, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511839]]
NM_021871 [[155506411, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511918]] [[155506645, 155508070], [155508663, 155508809], [155509944, 155510128], [155510588, 155510714], [155511785, 155511839]]
Promoter
Chrom Start End Description
chr4 155506723 155506731 CAGE_peak_10_at_FGA_5end
chr4 155506825 155506837 CAGE_peak_8_at_FGA_5end
chr4 155506931 155506942 CAGE_peak_5_at_FGA_5end
chr4 155507040 155507053 CAGE_peak_2_at_FGA_5end
chr4 155509990 155510015 CAGE_peak_4_at_FGA_5end
chr4 155510016 155510039 CAGE_peak_7_at_FGA_5end
chr4 155510040 155510051 CAGE_peak_9_at_FGA_5end
chr4 155510060 155510065 CAGE_peak_12_at_FGA_5end
chr4 155510075 155510108 CAGE_peak_3_at_FGA_5end
chr4 155510113 155510133 CAGE_peak_6_at_FGA_5end
chr4 155511887 155511903 CAGE_peak_1_at_FGA_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr4 GH04I154506 154506481 154507855 0.68 [{'connected_gene': 'PLRG1', 'score': 21.1}, {'connected_gene': 'RNU6-1285P', 'score': 11.41}, {'connected_gene': 'LRAT', 'score': 10.46}, {'connected_gene': 'FGA', 'score': 9.75}, {'connected_gene': 'DCHS2', 'score': 5.24}, {'connected_gene': 'LOC100128050', 'score': 0.37}]
chr4 GH04I154612 154612033 154613870 1.78 [{'connected_gene': 'FGG', 'score': 550.77}, {'connected_gene': 'FGA', 'score': 0.34}]
chr4 GH04I154615 154615380 154615519 0.39 [{'connected_gene': 'FGB', 'score': 3.98}, {'connected_gene': 'FGA', 'score': 3.51}, {'connected_gene': 'FGG', 'score': 3.45}, {'connected_gene': 'LRAT', 'score': 0.39}]
chr4 GH04I154562 154562962 154563021 0.93 [{'connected_gene': 'FGB', 'score': 550.77}, {'connected_gene': 'FGA', 'score': 0.31}]
chr4 GH04I154589 154589172 154592491 1.63 [{'connected_gene': 'FGA', 'score': 550.77}, {'connected_gene': 'FGG', 'score': 8.97}, {'connected_gene': 'LRAT', 'score': 4.68}]
chr4 GH04I154598 154598138 154598369 0.92 [{'connected_gene': 'FGA', 'score': 21.23}, {'connected_gene': 'FGB', 'score': 19.11}, {'connected_gene': 'FGG', 'score': 17.28}, {'connected_gene': 'LRAT', 'score': 10.14}]

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