Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000334134 [[69624991, 69625468], [69631087, 69631191], [69633481, 69633792]] [[69625072, 69625468], [69631087, 69631191], [69633481, 69633701]]
NM_005247 [[69624735, 69625468], [69631087, 69631191], [69633481, 69634192]] [[69625072, 69625468], [69631087, 69631191], [69633481, 69633701]]
Promoter
Chrom Start End Description
chr11 69633974 69633997 CAGE_peak_1_at_FGF3_5end
chr11 69634097 69634102 CAGE_peak_7_at_FGF3_5end
chr11 69634129 69634145 CAGE_peak_3_at_FGF3_5end
chr11 69634149 69634169 CAGE_peak_2_at_FGF3_5end
chr11 69634178 69634189 CAGE_peak_4_at_FGF3_5end
chr11 69634335 69634346 CAGE_peak_6_at_FGF3_5end
chr11 69634506 69634517 CAGE_peak_5_at_FGF3_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr11 GH11I069744 69744346 69745305 0.43 [{'connected_gene': 'FGF4', 'score': 12.13}, {'connected_gene': 'FGF3', 'score': 11.39}, {'connected_gene': 'ORAOV1', 'score': 10.55}, {'connected_gene': 'ANO1-AS1', 'score': 9.92}, {'connected_gene': 'LOC100129779', 'score': 0.44}, {'connected_gene': 'GC11M069658', 'score': 0.22}]
chr11 GH11I069733 69733433 69734330 0.49 [{'connected_gene': 'FGF4', 'score': 11.65}, {'connected_gene': 'FGF3', 'score': 11.56}, {'connected_gene': 'ORAOV1', 'score': 10.23}, {'connected_gene': 'LOC100129779', 'score': 0.77}, {'connected_gene': 'FGF19', 'score': 0.31}, {'connected_gene': 'GC11M069658', 'score': 0.2}]
chr11 GH11I069712 69712090 69713037 0.54 [{'connected_gene': 'FGF4', 'score': 11.87}, {'connected_gene': 'ORAOV1', 'score': 11.59}, {'connected_gene': 'FGF3', 'score': 11.1}, {'connected_gene': 'ANO1-AS1', 'score': 10.12}, {'connected_gene': 'FGF19', 'score': 0.44}, {'connected_gene': 'LOC100129779', 'score': 0.31}, {'connected_gene': 'GC11M069658', 'score': 0.16}]
chr11 GH11I069840 69840639 69841013 0.89 [{'connected_gene': 'FGF3', 'score': 29.79}, {'connected_gene': 'FGF19', 'score': 26.29}, {'connected_gene': 'ENSG00000260348', 'score': 0.19}]
chr11 GH11I069842 69842213 69842362 0.57 [{'connected_gene': 'FGF3', 'score': 12.57}, {'connected_gene': 'FGF4', 'score': 11.47}, {'connected_gene': 'FADD', 'score': 10.31}, {'connected_gene': 'ENSG00000254721', 'score': 10.31}, {'connected_gene': 'ENSG00000260348', 'score': 0.2}]
chr11 GH11I069843 69843193 69843322 0.2 [{'connected_gene': 'FGF3', 'score': 12.57}, {'connected_gene': 'FGF4', 'score': 11.47}, {'connected_gene': 'FADD', 'score': 10.31}, {'connected_gene': 'ENSG00000254721', 'score': 10.31}, {'connected_gene': 'ENSG00000260348', 'score': 0.2}]
chr11 GH11I069868 69868208 69868398 0.31 [{'connected_gene': 'FGF3', 'score': 11.57}, {'connected_gene': 'FGF4', 'score': 10.96}, {'connected_gene': 'ANO1-AS1', 'score': 9.81}, {'connected_gene': 'ENSG00000260348', 'score': 0.26}]
chr11 GH11I069867 69867853 69868002 0.64 [{'connected_gene': 'FGF3', 'score': 11.57}, {'connected_gene': 'FGF4', 'score': 10.96}, {'connected_gene': 'ANO1-AS1', 'score': 9.81}, {'connected_gene': 'ENSG00000260348', 'score': 0.26}]
chr11 GH11I069790 69790740 69792402 0.2 [{'connected_gene': 'FGF3', 'score': 5.15}, {'connected_gene': 'GC11M069658', 'score': 0.39}, {'connected_gene': 'FGF4', 'score': 0.37}]
chr11 GH11I069825 69825193 69825342 0.69 [{'connected_gene': 'FGF3', 'score': 0.44}, {'connected_gene': 'ENSG00000260348', 'score': 0.17}]
chr11 GH11I069832 69832513 69832967 0.38 [{'connected_gene': 'FGF3', 'score': 0.39}, {'connected_gene': 'ENSG00000260348', 'score': 0.18}]
chr11 GH11I069819 69819003 69819062 0.61 [{'connected_gene': 'FGF3', 'score': 550.77}, {'connected_gene': 'GC11M069658', 'score': 0.37}]
chr11 GH11I069834 69834331 69834795 0.31 [{'connected_gene': 'FGF3', 'score': 0.37}, {'connected_gene': 'ENSG00000260348', 'score': 0.18}]
chr11 GH11I069828 69828460 69829511 0.63 [{'connected_gene': 'FGF3', 'score': 0.44}, {'connected_gene': 'ENSG00000260348', 'score': 0.18}]
chr11 GH11I069829 69829956 69830120 0.2 [{'connected_gene': 'FGF3', 'score': 0.39}, {'connected_gene': 'ENSG00000260348', 'score': 0.18}]
chr11 GH11I069823 69823930 69824323 0.2 [{'connected_gene': 'FGF3', 'score': 0.77}, {'connected_gene': 'ENSG00000260348', 'score': 0.17}]
chr11 GH11I069830 69830123 69830798 0.2 [{'connected_gene': 'FGF3', 'score': 4.88}, {'connected_gene': 'ENSG00000260348', 'score': 0.18}]
chr11 GH11I069892 69892773 69892922 0.57 [{'connected_gene': 'ENSG00000260348', 'score': 0.37}, {'connected_gene': 'FGF3', 'score': 0.19}]
chr11 GH11I069905 69905519 69906594 0.88 [{'connected_gene': 'ENSG00000260348', 'score': 0.77}, {'connected_gene': 'FGF3', 'score': 0.17}]
chr11 GH11I069891 69891119 69892317 0.81 [{'connected_gene': 'ENSG00000260348', 'score': 0.37}, {'connected_gene': 'FGF3', 'score': 0.19}]
chr11 GH11I069900 69900395 69901041 0.93 [{'connected_gene': 'ENSG00000260348', 'score': 0.39}, {'connected_gene': 'FGF3', 'score': 0.18}]
chr11 GH11I069893 69893213 69893382 0.57 [{'connected_gene': 'ENSG00000260348', 'score': 0.37}, {'connected_gene': 'FGF3', 'score': 0.19}]
chr11 GH11I069888 69888633 69888822 0.74 [{'connected_gene': 'ENSG00000260348', 'score': 0.34}, {'connected_gene': 'FGF3', 'score': 0.2}]

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