PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000267843	[[49715292, 49715637], [49716228, 49716780], [49775347, 49775451], [49776506, 49780972]]	[[49716494, 49716780], [49775347, 49775451], [49776506, 49776701]]
ENST00000560270	[[49715433, 49715637], [49716228, 49717712]]	[[49716494, 49716788]]
ENST00000560765	[[49715454, 49715637], [49716228, 49716780], [49775347, 49775451], [49776506, 49776756]]	[[49716494, 49716780], [49775347, 49775451], [49776506, 49776701]]
ENST00000560979	[[49715456, 49715637], [49716637, 49716780], [49775347, 49775451], [49776506, 49776657]]	[[49716668, 49716780], [49775347, 49775451], [49776506, 49776657]]
ENST00000560704	[[49726592, 49726850], [49775347, 49775451], [49776506, 49776717]]	None
NM_002009	[[49715374, 49715637], [49716228, 49716780], [49775347, 49775451], [49776506, 49779523]]	[[49716494, 49716780], [49775347, 49775451], [49776506, 49776701]]

Promoter

Chrom	Start	End	Description
chr15	49715431	49715448	CAGE_peak_2_at_FGF7_5end
chr15	49715449	49715464	CAGE_peak_1_at_FGF7_5end
chr15	49716212	49716244	CAGE_peak_7_at_FGF7_5end
chr15	49716289	49716340	CAGE_peak_6_at_FGF7_5end
chr15	49716369	49716378	CAGE_peak_14_at_FGF7_5end
chr15	49716443	49716472	CAGE_peak_5_at_FGF7_5end
chr15	49716475	49716504	CAGE_peak_4_at_FGF7_5end
chr15	49716561	49716579	CAGE_peak_9_at_FGF7_5end
chr15	49716599	49716621	CAGE_peak_11_at_FGF7_5end
chr15	49716638	49716654	CAGE_peak_8_at_FGF7_5end
chr15	49716675	49716698	CAGE_peak_10_at_FGF7_5end
chr15	49716703	49716720	CAGE_peak_3_at_FGF7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I049270	49270644	49271972	0.31	[{'connected_gene': 'SECISBP2L', 'score': 10.42}, {'connected_gene': 'GALK2', 'score': 6.57}, {'connected_gene': 'FGF7', 'score': 6.27}, {'connected_gene': 'FAM227B', 'score': 4.67}, {'connected_gene': 'PIR52968', 'score': 0.28}, {'connected_gene': 'ENSG00000275580', 'score': 0.19}, {'connected_gene': 'GC15P049181', 'score': 0.16}]
chr15	GH15I049315	49315375	49316313	0.31	[{'connected_gene': 'SECISBP2L', 'score': 10.4}, {'connected_gene': 'FGF7', 'score': 6.32}, {'connected_gene': 'ENSG00000275580', 'score': 0.31}, {'connected_gene': 'PIR52968', 'score': 0.18}, {'connected_gene': 'GC15P049181', 'score': 0.12}, {'connected_gene': 'GALK2', 'score': 0.1}]
chr15	GH15I049445	49445815	49450922	0.31	[{'connected_gene': 'SECISBP2L', 'score': 8.68}, {'connected_gene': 'FGF7', 'score': 8.49}, {'connected_gene': 'FAM227B', 'score': 7.42}, {'connected_gene': 'GALK2', 'score': 4.2}, {'connected_gene': 'LOC105370811', 'score': 0.26}]
chr15	GH15I049237	49237984	49239489	0.49	[{'connected_gene': 'SECISBP2L', 'score': 10.42}, {'connected_gene': 'FGF7', 'score': 6.02}, {'connected_gene': 'FAM227B', 'score': 5.62}, {'connected_gene': 'GALK2', 'score': 5.1}, {'connected_gene': 'PIR52968', 'score': 0.77}, {'connected_gene': 'GC15P049181', 'score': 0.22}, {'connected_gene': 'ENSG00000275580', 'score': 0.15}]
chr15	GH15I049455	49455605	49457202	0.31	[{'connected_gene': 'SECISBP2L', 'score': 10.03}, {'connected_gene': 'FAM227B', 'score': 7.2}, {'connected_gene': 'GALK2', 'score': 4.08}, {'connected_gene': 'FGF7', 'score': 0.29}, {'connected_gene': 'LOC105370811', 'score': 0.29}]
chr15	GH15I049154	49154135	49157201	2.09	[{'connected_gene': 'COPS2', 'score': 574.11}, {'connected_gene': 'NDUFAF4P1', 'score': 550.77}, {'connected_gene': 'GALK2', 'score': 550.77}, {'connected_gene': 'DTWD1', 'score': 38.03}, {'connected_gene': 'DUT', 'score': 22.44}, {'connected_gene': 'ENSG00000259488', 'score': 13.69}, {'connected_gene': 'CEP152', 'score': 13.04}, {'connected_gene': 'FGF7', 'score': 10.96}, {'connected_gene': 'SECISBP2L', 'score': 10.74}, {'connected_gene': 'FAM227B', 'score': 5.64}]
chr15	GH15I049854	49854986	49857766	1.17	[{'connected_gene': 'DTWD1', 'score': 8.45}, {'connected_gene': 'FGF7', 'score': 7.44}, {'connected_gene': 'ATP8B4', 'score': 4.65}, {'connected_gene': 'LOC102724587', 'score': 0.34}, {'connected_gene': 'RLIMP3', 'score': 0.21}]
chr15	GH15I049859	49859515	49860591	0.51	[{'connected_gene': 'DTWD1', 'score': 7.44}, {'connected_gene': 'FGF7', 'score': 4.63}, {'connected_gene': 'LOC102724587', 'score': 0.37}, {'connected_gene': 'RLIMP3', 'score': 0.2}, {'connected_gene': 'ATP8B4', 'score': 0.05}]
chr15	GH15I049846	49846245	49849308	1.39	[{'connected_gene': 'DTWD1', 'score': 19.56}, {'connected_gene': 'FAM227B', 'score': 10.57}, {'connected_gene': 'FGF7', 'score': 7.67}, {'connected_gene': 'ATP8B4', 'score': 7.07}, {'connected_gene': 'LOC102724587', 'score': 5.23}, {'connected_gene': 'RLIMP3', 'score': 0.23}]
chr15	GH15I049462	49462333	49462805	0.4	[{'connected_gene': 'DTWD1', 'score': 15.84}, {'connected_gene': 'FAM227B', 'score': 10.49}, {'connected_gene': 'LOC105370811', 'score': 0.31}, {'connected_gene': 'FGF7', 'score': 0.28}]
chr15	GH15I049831	49831168	49832873	1.09	[{'connected_gene': 'DTWD1', 'score': 18.6}, {'connected_gene': 'FAM227B', 'score': 10.79}, {'connected_gene': 'LOC102724587', 'score': 9.33}, {'connected_gene': 'FGF7', 'score': 6.88}, {'connected_gene': 'RLIMP3', 'score': 0.28}]
chr15	GH15I049471	49471658	49472535	0.68	[{'connected_gene': 'DTWD1', 'score': 5.47}, {'connected_gene': 'LOC105370811', 'score': 0.37}, {'connected_gene': 'FGF7', 'score': 0.25}, {'connected_gene': 'FAM227B', 'score': 0.11}]
chr15	GH15I049169	49169217	49172656	2.05	[{'connected_gene': 'GALK2', 'score': 556.97}, {'connected_gene': 'MIR4716', 'score': 550.77}, {'connected_gene': 'SECISBP2L', 'score': 10.72}, {'connected_gene': 'FGF7', 'score': 6.23}, {'connected_gene': 'FAM227B', 'score': 5.55}, {'connected_gene': 'RPL15P19', 'score': 0.44}]
chr15	GH15I048975	48975325	48977005	1.32	[{'connected_gene': 'FGF7', 'score': 4.43}, {'connected_gene': 'KRT8P24', 'score': 0.77}, {'connected_gene': 'GC15P048991', 'score': 0.37}]
chr15	GH15I049421	49421945	49426600	2.16	[{'connected_gene': 'FGF7', 'score': 569.04}, {'connected_gene': 'DTWD1', 'score': 16.6}, {'connected_gene': 'COPS2', 'score': 14.16}, {'connected_gene': 'ENSG00000259715', 'score': 12.41}, {'connected_gene': 'SECISBP2L', 'score': 10.34}, {'connected_gene': 'GALK2', 'score': 4.23}, {'connected_gene': 'LOC105370811', 'score': 0.2}, {'connected_gene': 'FAM227B', 'score': 0.08}]
chr15	GH15I049152	49152890	49153296	0.31	[{'connected_gene': 'FGF7', 'score': 6.22}, {'connected_gene': 'GALK2', 'score': 0.77}, {'connected_gene': 'COPS2', 'score': 0.77}, {'connected_gene': 'GC15M049139', 'score': 0.37}, {'connected_gene': 'ENSG00000200120', 'score': 0.37}]
chr15	GH15I049146	49146104	49146293	0.59	[{'connected_gene': 'FGF7', 'score': 5.96}, {'connected_gene': 'FAM227B', 'score': 4.26}, {'connected_gene': 'GC15M049139', 'score': 0.44}, {'connected_gene': 'GALK2', 'score': 0.44}, {'connected_gene': 'ENSG00000200120', 'score': 0.44}, {'connected_gene': 'COPS2', 'score': 0.44}]
chr15	GH15I049410	49410764	49410913	0.2	[{'connected_gene': 'FGF7', 'score': 0.39}, {'connected_gene': 'LOC100420615', 'score': 0.26}, {'connected_gene': 'FAM227B', 'score': 0.08}]
chr15	GH15I049412	49412583	49413444	0.38	[{'connected_gene': 'FGF7', 'score': 0.39}, {'connected_gene': 'LOC100420615', 'score': 0.25}, {'connected_gene': 'FAM227B', 'score': 0.08}]
chr15	GH15I049383	49383424	49383553	0.56	[{'connected_gene': 'FGF7', 'score': 6.03}, {'connected_gene': 'LOC100420615', 'score': 0.37}, {'connected_gene': 'FAM227B', 'score': 0.07}]
chr15	GH15I049415	49415724	49415913	0.52	[{'connected_gene': 'FGF7', 'score': 0.44}, {'connected_gene': 'LOC100420615', 'score': 0.25}, {'connected_gene': 'FAM227B', 'score': 0.08}]
chr15	GH15I049443	49443219	49444979	0.2	[{'connected_gene': 'FAM227B', 'score': 18.59}, {'connected_gene': 'DTWD1', 'score': 10.1}, {'connected_gene': 'SECISBP2L', 'score': 9.96}, {'connected_gene': 'GALK2', 'score': 4.92}, {'connected_gene': 'FGF7', 'score': 0.34}, {'connected_gene': 'LOC105370811', 'score': 0.25}]
chr15	GH15I049458	49458700	49461694	0.31	[{'connected_gene': 'FAM227B', 'score': 21.56}, {'connected_gene': 'DTWD1', 'score': 15.84}, {'connected_gene': 'SECISBP2L', 'score': 8.51}, {'connected_gene': 'LOC105370811', 'score': 0.31}, {'connected_gene': 'FGF7', 'score': 0.28}]
chr15	GH15I049435	49435344	49435493	0.69	[{'connected_gene': 'FAM227B', 'score': 10.49}, {'connected_gene': 'DTWD1', 'score': 10.49}, {'connected_gene': 'FGF7', 'score': 0.39}, {'connected_gene': 'LOC105370811', 'score': 0.23}]
chr15	GH15I049439	49439001	49439799	0.79	[{'connected_gene': 'FAM227B', 'score': 10.08}, {'connected_gene': 'DTWD1', 'score': 10.08}, {'connected_gene': 'FGF7', 'score': 0.37}, {'connected_gene': 'LOC105370811', 'score': 0.23}]
chr15	GH15I049618	49618912	49625030	2.13	[{'connected_gene': 'FAM227B', 'score': 561.31}, {'connected_gene': 'DTWD1', 'score': 560.9}, {'connected_gene': 'GABPB1-AS1', 'score': 19.53}, {'connected_gene': 'CEP152', 'score': 12.33}, {'connected_gene': 'ENSG00000259298', 'score': 11.23}, {'connected_gene': 'ENSG00000259618', 'score': 10.96}, {'connected_gene': 'USP8', 'score': 10.95}, {'connected_gene': 'FGF7', 'score': 10.21}, {'connected_gene': 'ENSG00000259715', 'score': 9.76}, {'connected_gene': 'GC15P049652', 'score': 0.29}]
chr15	GH15I049674	49674181	49675793	0.95	[{'connected_gene': 'FAM227B', 'score': 9.16}, {'connected_gene': 'FGF7', 'score': 4.08}, {'connected_gene': 'DTWD1', 'score': 2.81}, {'connected_gene': 'GC15P049692', 'score': 0.37}, {'connected_gene': 'GC15P049652', 'score': 0.34}]
chr15	GH15I049428	49428201	49429178	1.03	[{'connected_gene': 'FAM227B', 'score': 6.92}, {'connected_gene': 'FGF7', 'score': 0.44}, {'connected_gene': 'LOC105370811', 'score': 0.21}]
chr15	GH15I049468	49468514	49468997	0.87	[{'connected_gene': 'LOC105370811', 'score': 0.34}, {'connected_gene': 'FGF7', 'score': 0.25}, {'connected_gene': 'FAM227B', 'score': 0.1}]
chr15	GH15I049467	49466601	49467200	0.4	[{'connected_gene': 'LOC105370811', 'score': 0.34}, {'connected_gene': 'FGF7', 'score': 0.26}, {'connected_gene': 'FAM227B', 'score': 0.1}]
chr15	GH15I049466	49466201	49466400	0.4	[{'connected_gene': 'LOC105370811', 'score': 0.34}, {'connected_gene': 'FGF7', 'score': 0.26}, {'connected_gene': 'FAM227B', 'score': 0.1}]
chr15	GH15I049812	49812917	49814696	0.38	[{'connected_gene': 'LOC102724587', 'score': 9.31}, {'connected_gene': 'DTWD1', 'score': 7.9}, {'connected_gene': 'FGF7', 'score': 4.59}, {'connected_gene': 'RLIMP3', 'score': 0.37}]
chr15	GH15I049815	49815548	49816884	0.9	[{'connected_gene': 'LOC102724587', 'score': 9.31}, {'connected_gene': 'FGF7', 'score': 4.54}, {'connected_gene': 'RLIMP3', 'score': 0.34}]
chr15	GH15I049876	49876168	49879328	1.24	[{'connected_gene': 'LOC102724587', 'score': 560.99}, {'connected_gene': 'FGF7', 'score': 10.52}, {'connected_gene': 'DTWD1', 'score': 8.97}, {'connected_gene': 'GC15P049911', 'score': 0.29}, {'connected_gene': 'ATP8B4', 'score': 0.06}]
chr15	GH15I049862	49862834	49865655	0.89	[{'connected_gene': 'LOC102724587', 'score': 9.63}, {'connected_gene': 'FGF7', 'score': 6.56}, {'connected_gene': 'DTWD1', 'score': 6.35}, {'connected_gene': 'RLIMP3', 'score': 0.19}, {'connected_gene': 'ATP8B4', 'score': 0.06}]
chr15	GH15I049133	49133973	49139176	0.86	[{'connected_gene': 'GC15M049139', 'score': 550.77}, {'connected_gene': 'ENSG00000200120', 'score': 550.77}, {'connected_gene': 'SECISBP2L', 'score': 10.77}, {'connected_gene': 'SHC4', 'score': 10.61}, {'connected_gene': 'FGF7', 'score': 6.26}, {'connected_gene': 'GALK2', 'score': 5.29}, {'connected_gene': 'FAM227B', 'score': 4.79}, {'connected_gene': 'COPS2', 'score': 0.37}, {'connected_gene': 'GC15M049107', 'score': 0.31}]
chr15	GH15I049734	49734244	49735570	0.52	[{'connected_gene': 'GC15P049734', 'score': 550.77}, {'connected_gene': 'FGF7', 'score': 5.7}, {'connected_gene': 'FAM227B', 'score': 4.42}, {'connected_gene': 'LOC100420615', 'score': 4.34}, {'connected_gene': 'ATP8B4', 'score': 3.93}, {'connected_gene': 'RLIMP3', 'score': 0.22}]