PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000445105	[[191857183, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192445112], [192445272, 192445388]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192444982]]
ENST00000264730	[[191859683, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192444982]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192444982]]
ENST00000454309	[[191860297, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192125813, 192126838]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192125813, 192126012]]
ENST00000440901	[[191861387, 191861916], [191888246, 191888445], [191986439, 191986538]]	[[191861797, 191861916], [191888246, 191888445], [191986439, 191986538]]
ENST00000450716	[[191861766, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192445112], [192485492, 192485553]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192444982]]
ENST00000430714	[[191861776, 191861916], [191888246, 191888445], [192053149, 192053253], [192444969, 192445112], [192445272, 192445289]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192444969, 192444982]]
ENST00000448795	[[191861848, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192445272, 192445330]]	[[191861848, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078268]]
ENST00000418610	[[191888352, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192445314]]	[[191888352, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192444982]]
ENST00000466144	[[192390754, 192391059], [192444969, 192445112], [192445272, 192445376]]	None
ENST00000491636	[[192444670, 192445112], [192445272, 192445376]]	None
NM_021032	[[191857181, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192125813, 192126838]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192125813, 192126012]]
NM_004113	[[191857181, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192445112], [192445272, 192445388]]	[[191861797, 191861916], [191888246, 191888445], [192053149, 192053253], [192078216, 192078327], [192444969, 192444982]]

Promoter

Chrom	Start	End	Description
chr3	192126182	192126193	CAGE_peak_11_at_FGF12_5end
chr3	192126203	192126215	CAGE_peak_7_at_FGF12_5end
chr3	192127275	192127299	CAGE_peak_6_at_FGF12_5end
chr3	192127302	192127328	CAGE_peak_2_at_FGF12_5end
chr3	192127333	192127358	CAGE_peak_3_at_FGF12_5end
chr3	192445212	192445229	CAGE_peak_5_at_FGF12_5end
chr3	192445319	192445395	CAGE_peak_1_at_FGF12_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I191903	191903202	191903508	0.27	[{'connected_gene': 'FGF12', 'score': 11.82}, {'connected_gene': 'PYDC2', 'score': 3.95}, {'connected_gene': 'LOC100129725', 'score': 0.25}, {'connected_gene': 'LOC105374276', 'score': 0.16}]
chr3	GH03I192037	192037103	192045422	0.74	[{'connected_gene': 'FGF12', 'score': 4.74}, {'connected_gene': 'LOC105374277', 'score': 0.77}, {'connected_gene': 'RN7SKP222', 'score': 0.23}]
chr3	GH03I192274	192273552	192273701	0.56	[{'connected_gene': 'FGF12', 'score': 5.04}, {'connected_gene': 'FGF12-AS1', 'score': 0.28}, {'connected_gene': 'GC03M192418', 'score': 0.11}]
chr3	GH03I192275	192275852	192276001	0.38	[{'connected_gene': 'FGF12', 'score': 5.67}, {'connected_gene': 'FGF12-AS1', 'score': 0.28}, {'connected_gene': 'GC03M192418', 'score': 0.11}]
chr3	GH03I192408	192408614	192410667	1.82	[{'connected_gene': 'FGF12', 'score': 550.05}, {'connected_gene': 'GC03M192418', 'score': 0.44}, {'connected_gene': 'FGF12-AS1', 'score': 0.09}]
chr3	GH03I192727	192727400	192728000	1.72	[{'connected_gene': 'FGF12', 'score': 560.9}, {'connected_gene': 'RNU1-20P', 'score': 0.77}, {'connected_gene': 'GC03P192681', 'score': 0.25}]
chr3	GH03I192699	192699494	192700133	0.2	[{'connected_gene': 'FGF12', 'score': 10.53}, {'connected_gene': 'GC03P192681', 'score': 0.37}, {'connected_gene': 'RNU1-20P', 'score': 0.31}]
chr3	GH03I192722	192722249	192722853	0.2	[{'connected_gene': 'FGF12', 'score': 10.89}, {'connected_gene': 'RNU1-20P', 'score': 0.44}, {'connected_gene': 'GC03P192681', 'score': 0.26}]
chr3	GH03I192706	192706250	192707748	0.31	[{'connected_gene': 'FGF12', 'score': 11.42}, {'connected_gene': 'RNU1-20P', 'score': 0.34}, {'connected_gene': 'GC03P192681', 'score': 0.31}]
chr3	GH03I192710	192710471	192711149	0.2	[{'connected_gene': 'FGF12', 'score': 11.63}, {'connected_gene': 'RNU1-20P', 'score': 0.37}, {'connected_gene': 'GC03P192681', 'score': 0.31}]
chr3	GH03I192714	192714676	192715371	0.2	[{'connected_gene': 'FGF12', 'score': 10.06}, {'connected_gene': 'RNU1-20P', 'score': 0.39}, {'connected_gene': 'GC03P192681', 'score': 0.29}]
chr3	GH03I192704	192704777	192706109	0.2	[{'connected_gene': 'FGF12', 'score': 11.42}, {'connected_gene': 'GC03P192681', 'score': 0.34}, {'connected_gene': 'RNU1-20P', 'score': 0.34}]
chr3	GH03I192708	192708506	192708798	0.2	[{'connected_gene': 'FGF12', 'score': 11.84}, {'connected_gene': 'RNU1-20P', 'score': 0.34}, {'connected_gene': 'GC03P192681', 'score': 0.31}]
chr3	GH03I192715	192715519	192717441	0.2	[{'connected_gene': 'FGF12', 'score': 10.06}, {'connected_gene': 'RNU1-20P', 'score': 0.39}, {'connected_gene': 'GC03P192681', 'score': 0.29}]
chr3	GH03I192713	192713422	192714059	0.2	[{'connected_gene': 'FGF12', 'score': 10.03}, {'connected_gene': 'RNU1-20P', 'score': 0.37}, {'connected_gene': 'GC03P192681', 'score': 0.29}]
chr3	GH03I191925	191925604	191929981	0.38	[{'connected_gene': 'FGF12', 'score': 13.9}, {'connected_gene': 'LOC100129725', 'score': 0.34}, {'connected_gene': 'LOC105374276', 'score': 0.13}]
chr3	GH03I191915	191915380	191916599	0.2	[{'connected_gene': 'FGF12', 'score': 5.42}, {'connected_gene': 'LOC100129725', 'score': 0.28}, {'connected_gene': 'LOC105374276', 'score': 0.14}]
chr3	GH03I192592	192592895	192593562	0.2	[{'connected_gene': 'FGF12', 'score': 10.67}, {'connected_gene': 'ENSG00000238902', 'score': 0.22}, {'connected_gene': 'GC03P192681', 'score': 0.17}]
chr3	GH03I192615	192615099	192615239	0.22	[{'connected_gene': 'FGF12', 'score': 1.98}, {'connected_gene': 'GC03P192681', 'score': 0.2}, {'connected_gene': 'ENSG00000238902', 'score': 0.18}]
chr3	GH03I192671	192671644	192673363	0.2	[{'connected_gene': 'FGF12', 'score': 10.51}, {'connected_gene': 'GC03P192681', 'score': 0.44}, {'connected_gene': 'ENSG00000238902', 'score': 0.12}]
chr3	GH03I191959	191959018	191963892	0.69	[{'connected_gene': 'FGF12', 'score': 15.3}, {'connected_gene': 'ENSG00000237653', 'score': 0.44}, {'connected_gene': 'ENSG00000232353', 'score': 0.2}]
chr3	GH03I192875	192875492	192882735	1.31	[{'connected_gene': 'MB21D2', 'score': 34.16}, {'connected_gene': 'VEZF1P1', 'score': 9.56}, {'connected_gene': 'FGF12', 'score': 0.14}]
chr3	GH03I192839	192839826	192842349	0.43	[{'connected_gene': 'MB21D2', 'score': 15.79}, {'connected_gene': 'VEZF1P1', 'score': 9.09}, {'connected_gene': 'FGF12', 'score': 0.19}]
chr3	GH03I192883	192883062	192903603	1.75	[{'connected_gene': 'MB21D2', 'score': 40.72}, {'connected_gene': 'VEZF1P1', 'score': 9.57}, {'connected_gene': 'FGF12', 'score': 0.13}]
chr3	GH03I192868	192868312	192868378	0.2	[{'connected_gene': 'MB21D2', 'score': 0.25}, {'connected_gene': 'FGF12', 'score': 0.15}]
chr3	GH03I192906	192906172	192909075	0.99	[{'connected_gene': 'MB21D2', 'score': 24.57}, {'connected_gene': 'FGF12', 'score': 0.12}]
chr3	GH03I192846	192846822	192853303	1.22	[{'connected_gene': 'MB21D2', 'score': 22.7}, {'connected_gene': 'FGF12', 'score': 0.18}]
chr3	GH03I192869	192869400	192870000	0.85	[{'connected_gene': 'MB21D2', 'score': 12.15}, {'connected_gene': 'FGF12', 'score': 0.15}]
chr3	GH03I192817	192817138	192821901	1.1	[{'connected_gene': 'MB21D2', 'score': 16.35}, {'connected_gene': 'FGF12', 'score': 0.23}]
chr3	GH03I192904	192904146	192906051	0.49	[{'connected_gene': 'MB21D2', 'score': 19.23}, {'connected_gene': 'FGF12', 'score': 0.12}]
chr3	GH03I192874	192874223	192875136	0.31	[{'connected_gene': 'MB21D2', 'score': 23.56}, {'connected_gene': 'FGF12', 'score': 0.14}]
chr3	GH03I192835	192835809	192836869	0.69	[{'connected_gene': 'MB21D2', 'score': 17.98}, {'connected_gene': 'FGF12', 'score': 0.2}]
chr3	GH03I192844	192844812	192845861	0.46	[{'connected_gene': 'MB21D2', 'score': 17.92}, {'connected_gene': 'FGF12', 'score': 0.18}]
chr3	GH03I192829	192829895	192834684	1.11	[{'connected_gene': 'MB21D2', 'score': 22.55}, {'connected_gene': 'FGF12', 'score': 0.21}]
chr3	GH03I192862	192862512	192862661	0.49	[{'connected_gene': 'MB21D2', 'score': 11.21}, {'connected_gene': 'FGF12', 'score': 0.16}]
chr3	GH03I192913	192913661	192919108	2.48	[{'connected_gene': 'MB21D2', 'score': 569.85}, {'connected_gene': 'FGF12', 'score': 0.11}]
chr3	GH03I192825	192825601	192826200	1.1	[{'connected_gene': 'MB21D2', 'score': 11.42}, {'connected_gene': 'FGF12', 'score': 0.22}]
chr3	GH03I192494	192494292	192494441	0.2	[{'connected_gene': 'FGF12-AS3', 'score': 11.36}, {'connected_gene': 'GC03M192418', 'score': 0.19}, {'connected_gene': 'FGF12', 'score': 0.06}]
chr3	GH03I192513	192513999	192515946	1	[{'connected_gene': 'FGF12-AS3', 'score': 550.77}, {'connected_gene': 'FGF12-AS2', 'score': 550.77}, {'connected_gene': 'FGF12', 'score': 0.07}]
chr3	GH03I192167	192167161	192167178	0.23	[{'connected_gene': 'FGF12-AS1', 'score': 10.26}, {'connected_gene': 'FGF12', 'score': 1.5}, {'connected_gene': 'GC03M192209', 'score': 0.26}, {'connected_gene': 'RN7SKP222', 'score': 0.19}]
chr3	GH03I192273	192273712	192273861	0.56	[{'connected_gene': 'FGF12-AS1', 'score': 0.28}, {'connected_gene': 'GC03M192418', 'score': 0.11}, {'connected_gene': 'FGF12', 'score': 0.04}]
chr3	GH03I192444	192444612	192444781	0.65	[{'connected_gene': 'FGF12-AS1', 'score': 10.4}, {'connected_gene': 'GC03M192418', 'score': 0.31}, {'connected_gene': 'FGF12-AS3', 'score': 0.19}, {'connected_gene': 'FGF12', 'score': 0.05}]
chr3	GH03I192719	192719827	192721296	0.31	[{'connected_gene': 'RNU1-20P', 'score': 0.44}, {'connected_gene': 'GC03P192681', 'score': 0.28}, {'connected_gene': 'FGF12', 'score': 0.25}]
chr3	GH03I192746	192746804	192747861	0.38	[{'connected_gene': 'RNU1-20P', 'score': 0.37}, {'connected_gene': 'FGF12', 'score': 0.34}]
chr3	GH03I192718	192718273	192718824	0.2	[{'connected_gene': 'RNU1-20P', 'score': 0.39}, {'connected_gene': 'GC03P192681', 'score': 0.28}, {'connected_gene': 'FGF12', 'score': 0.25}]
chr3	GH03I192668	192668209	192668841	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.39}, {'connected_gene': 'FGF12', 'score': 0.15}, {'connected_gene': 'ENSG00000238902', 'score': 0.12}]
chr3	GH03I192597	192597294	192598621	0.94	[{'connected_gene': 'ENSG00000238902', 'score': 0.21}, {'connected_gene': 'GC03P192681', 'score': 0.18}, {'connected_gene': 'FGF12', 'score': 0.1}]
chr3	GH03I192641	192641878	192642586	0.38	[{'connected_gene': 'GC03P192681', 'score': 0.28}, {'connected_gene': 'ENSG00000238902', 'score': 0.14}, {'connected_gene': 'FGF12', 'score': 0.13}]
chr3	GH03I192657	192657946	192658722	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.34}, {'connected_gene': 'FGF12', 'score': 0.14}, {'connected_gene': 'ENSG00000238902', 'score': 0.13}]
chr3	GH03I192676	192676754	192682364	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.77}, {'connected_gene': 'FGF12', 'score': 0.17}, {'connected_gene': 'ENSG00000238902', 'score': 0.11}]
chr3	GH03I192655	192655094	192657140	0.54	[{'connected_gene': 'GC03P192681', 'score': 0.31}, {'connected_gene': 'FGF12', 'score': 0.14}, {'connected_gene': 'ENSG00000238902', 'score': 0.13}]
chr3	GH03I192675	192675498	192676645	0.31	[{'connected_gene': 'GC03P192681', 'score': 0.44}, {'connected_gene': 'FGF12', 'score': 0.16}, {'connected_gene': 'ENSG00000238902', 'score': 0.11}]
chr3	GH03I192610	192610321	192611231	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.19}, {'connected_gene': 'ENSG00000238902', 'score': 0.18}, {'connected_gene': 'FGF12', 'score': 0.1}]
chr3	GH03I192661	192661719	192662780	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.37}, {'connected_gene': 'FGF12', 'score': 0.14}, {'connected_gene': 'ENSG00000238902', 'score': 0.13}]
chr3	GH03I192623	192623075	192624071	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.22}, {'connected_gene': 'ENSG00000238902', 'score': 0.17}, {'connected_gene': 'FGF12', 'score': 0.11}]
chr3	GH03I192651	192651665	192653599	0.52	[{'connected_gene': 'GC03P192681', 'score': 0.31}, {'connected_gene': 'FGF12', 'score': 0.13}, {'connected_gene': 'ENSG00000238902', 'score': 0.13}]
chr3	GH03I192606	192606661	192607695	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.19}, {'connected_gene': 'ENSG00000238902', 'score': 0.19}, {'connected_gene': 'FGF12', 'score': 0.1}]
chr3	GH03I192642	192642597	192643053	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.28}, {'connected_gene': 'ENSG00000238902', 'score': 0.14}, {'connected_gene': 'FGF12', 'score': 0.13}]
chr3	GH03I192636	192636012	192638187	0.31	[{'connected_gene': 'GC03P192681', 'score': 0.26}, {'connected_gene': 'ENSG00000238902', 'score': 0.15}, {'connected_gene': 'FGF12', 'score': 0.12}]
chr3	GH03I192608	192608441	192609943	0.38	[{'connected_gene': 'GC03P192681', 'score': 0.19}, {'connected_gene': 'ENSG00000238902', 'score': 0.18}, {'connected_gene': 'FGF12', 'score': 0.1}]
chr3	GH03I192570	192570802	192571800	0.86	[{'connected_gene': 'ENSG00000238902', 'score': 0.28}, {'connected_gene': 'GC03P192681', 'score': 0.14}, {'connected_gene': 'FGF12', 'score': 0.08}]
chr3	GH03I192611	192611484	192612319	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.2}, {'connected_gene': 'ENSG00000238902', 'score': 0.18}, {'connected_gene': 'FGF12', 'score': 0.1}]
chr3	GH03I192181	192181637	192181649	0.22	[{'connected_gene': 'GC03M192209', 'score': 0.31}, {'connected_gene': 'RN7SKP222', 'score': 0.17}, {'connected_gene': 'FGF12', 'score': 0.03}]
chr3	GH03I192155	192155202	192155588	0.64	[{'connected_gene': 'GC03M192209', 'score': 0.23}, {'connected_gene': 'RN7SKP222', 'score': 0.21}, {'connected_gene': 'FGF12', 'score': 0.03}]
chr3	GH03I192417	192417132	192417281	0.46	[{'connected_gene': 'GC03M192418', 'score': 0.77}, {'connected_gene': 'FGF12-AS1', 'score': 0.1}, {'connected_gene': 'FGF12', 'score': 0.05}]
chr3	GH03I192686	192686977	192688529	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.44}, {'connected_gene': 'RNU1-20P', 'score': 0.26}, {'connected_gene': 'FGF12', 'score': 0.18}]
chr3	GH03I192696	192696309	192696585	0.42	[{'connected_gene': 'GC03P192681', 'score': 0.39}, {'connected_gene': 'RNU1-20P', 'score': 0.29}, {'connected_gene': 'FGF12', 'score': 0.19}]
chr3	GH03I192682	192682508	192684652	0.38	[{'connected_gene': 'GC03P192681', 'score': 550.77}, {'connected_gene': 'RNU1-20P', 'score': 0.25}, {'connected_gene': 'FGF12', 'score': 0.18}]
chr3	GH03I192685	192685235	192686738	0.43	[{'connected_gene': 'GC03P192681', 'score': 0.77}, {'connected_gene': 'RNU1-20P', 'score': 0.26}, {'connected_gene': 'FGF12', 'score': 0.18}]
chr3	GH03I192694	192694664	192695132	0.2	[{'connected_gene': 'GC03P192681', 'score': 0.39}, {'connected_gene': 'RNU1-20P', 'score': 0.29}, {'connected_gene': 'FGF12', 'score': 0.19}]