PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000355624	[[119764426, 119768736], [119774575, 119774621], [119798482, 119798951], [119799633, 119800076], [119805321, 119806114]]	[[119768508, 119768736], [119774575, 119774621], [119798482, 119798951], [119799633, 119800076], [119805321, 119805674]]
ENST00000369199	[[119768508, 119768736], [119774575, 119774621], [119793492, 119793552], [119798482, 119798951], [119799633, 119800076], [119805321, 119805674]]	[[119768508, 119768736], [119774575, 119774621], [119793492, 119793552], [119798482, 119798951], [119799633, 119800076], [119805321, 119805674]]
ENST00000483413	[[119798434, 119798951], [119799633, 119799823]]	None
ENST00000476207	[[119765266, 119765349], [119768592, 119768736], [119774575, 119774621]]	None
NM_014904	[[119764426, 119768736], [119774575, 119774621], [119798482, 119798951], [119799633, 119800076], [119805321, 119806114]]	[[119768508, 119768736], [119774575, 119774621], [119798482, 119798951], [119799633, 119800076], [119805321, 119805674]]
NM_001330167	[[119764426, 119768736], [119774575, 119774621], [119793492, 119793552], [119798482, 119798951], [119799633, 119800076], [119805321, 119806395]]	[[119768508, 119768736], [119774575, 119774621], [119793492, 119793552], [119798482, 119798951], [119799633, 119800076], [119805321, 119805674]]

Promoter

Chrom	Start	End	Description
chr10	119799753	119799794	CAGE_peak_10_at_RAB11FIP2_5end
chr10	119805558	119805572	CAGE_peak_7_at_RAB11FIP2_5end
chr10	119806085	119806108	CAGE_peak_5_at_RAB11FIP2_5end
chr10	119806121	119806158	CAGE_peak_4_at_RAB11FIP2_5end
chr10	119806381	119806423	CAGE_peak_1_at_RAB11FIP2_5end
chr10	119806435	119806460	CAGE_peak_2_at_RAB11FIP2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I118045	118045146	118047839	2	[{'connected_gene': 'CASC2', 'score': 555.66}, {'connected_gene': 'RAB11FIP2', 'score': 550.77}, {'connected_gene': 'RPL17P36', 'score': 13.07}, {'connected_gene': 'ENSG00000231104', 'score': 10.37}]
chr10	GH10I118031	118031390	118033564	0.2	[{'connected_gene': 'CASC2', 'score': 7.28}, {'connected_gene': 'ENSG00000231104', 'score': 4.63}, {'connected_gene': 'RAB11FIP2', 'score': 0.39}]
chr10	GH10I118034	118034875	118036465	0.58	[{'connected_gene': 'CASC2', 'score': 5.06}, {'connected_gene': 'RAB11FIP2', 'score': 0.39}, {'connected_gene': 'ENSG00000231104', 'score': 0.37}]
chr10	GH10I118042	118042801	118043200	0.46	[{'connected_gene': 'RAB11FIP2', 'score': 0.77}, {'connected_gene': 'CASC2', 'score': 0.77}, {'connected_gene': 'ENSG00000231104', 'score': 0.31}]
chr10	GH10I117551	117551994	117553619	0.95	[{'connected_gene': 'EMX2', 'score': 27.36}, {'connected_gene': 'RAB11FIP2', 'score': 4.03}, {'connected_gene': 'EMX2OS', 'score': 0.44}, {'connected_gene': 'ENSG00000235198', 'score': 0.37}]
chr10	GH10I117174	117174601	117176299	1.09	[{'connected_gene': 'VAX1', 'score': 11.86}, {'connected_gene': 'KCNK18', 'score': 11.85}, {'connected_gene': 'RPL12P26', 'score': 11.85}, {'connected_gene': 'MIR3663HG', 'score': 11.04}, {'connected_gene': 'RAB11FIP2', 'score': 10.52}, {'connected_gene': 'SLC18A2', 'score': 10.31}, {'connected_gene': 'LOC105378500', 'score': 10.31}, {'connected_gene': 'GC10M117197', 'score': 0.34}]
chr10	GH10I118017	118017490	118018262	0.2	[{'connected_gene': 'ENSG00000231104', 'score': 550.77}, {'connected_gene': 'RAB11FIP2', 'score': 11.43}, {'connected_gene': 'CASC2', 'score': 11.43}]
chr10	GH10I118076	118076493	118077431	0.2	[{'connected_gene': 'PIR56844', 'score': 0.39}, {'connected_gene': 'RAB11FIP2', 'score': 0.29}, {'connected_gene': 'CASC2', 'score': 0.29}]
chr10	GH10I118061	118061915	118063566	0.38	[{'connected_gene': 'ENSG00000231104', 'score': 11.7}, {'connected_gene': 'RAB11FIP2', 'score': 0.37}, {'connected_gene': 'CASC2', 'score': 0.37}, {'connected_gene': 'PIR56844', 'score': 0.31}]
chr10	GH10I117979	117979752	117980965	0.43	[{'connected_gene': 'ENSG00000231104', 'score': 11.38}, {'connected_gene': 'RAB11FIP2', 'score': 11.3}, {'connected_gene': 'LOC105378504', 'score': 0.26}]
chr10	GH10I117972	117972570	117972719	0.2	[{'connected_gene': 'ENSG00000231104', 'score': 11.07}, {'connected_gene': 'RAB11FIP2', 'score': 11.0}, {'connected_gene': 'LOC105378504', 'score': 0.29}]
chr10	GH10I117928	117928355	117928565	0.4	[{'connected_gene': 'ENSG00000231104', 'score': 10.52}, {'connected_gene': 'RAB11FIP2', 'score': 10.48}, {'connected_gene': 'LOC105378504', 'score': 0.39}, {'connected_gene': 'ENSG00000263041', 'score': 0.15}]
chr10	GH10I117966	117966288	117967650	0.76	[{'connected_gene': 'ENSG00000231104', 'score': 11.08}, {'connected_gene': 'RAB11FIP2', 'score': 11.03}, {'connected_gene': 'LOC105378504', 'score': 0.31}]