PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375251	[[99212482, 99212910], [99220660, 99220823], [99246743, 99246915], [99250370, 99250556], [99252263, 99253618]]	[[99212561, 99212910], [99220660, 99220823], [99246743, 99246915], [99250370, 99250556], [99252263, 99252320]]
ENST00000375249	[[99212486, 99212910], [99220660, 99220823], [99227618, 99227780], [99227991, 99228060], [99233292, 99233376], [99246743, 99246915], [99250370, 99250556], [99252263, 99253618]]	[[99212561, 99212910], [99220660, 99220823], [99227618, 99227780], [99227991, 99228060], [99233292, 99233376], [99246743, 99246915], [99250370, 99250556], [99252263, 99252320]]
ENST00000466976	[[99245306, 99246915], [99250370, 99250556], [99252263, 99253618]]	None
NM_014282	[[99212436, 99212910], [99220660, 99220823], [99227618, 99227780], [99227991, 99228060], [99233292, 99233376], [99246743, 99246915], [99250370, 99250556], [99252263, 99253618]]	[[99212561, 99212910], [99220660, 99220823], [99227618, 99227780], [99227991, 99228060], [99233292, 99233376], [99246743, 99246915], [99250370, 99250556], [99252263, 99252320]]

Promoter

Chrom	Start	End	Description
chr9	99212366	99212385	CAGE_peak_2_at_HABP4_5end
chr9	99212403	99212536	CAGE_peak_1_at_HABP4_5end
chr9	99220754	99220765	CAGE_peak_6_at_HABP4_5end
chr9	99220771	99220778	CAGE_peak_13_at_HABP4_5end
chr9	99227670	99227683	CAGE_peak_3_at_HABP4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I096513	96513232	96516496	1.14	[{'connected_gene': 'HSD17B3', 'score': 10.03}, {'connected_gene': 'RNU6-1160P', 'score': 10.02}, {'connected_gene': 'HABP4', 'score': 0.21}, {'connected_gene': 'LOC105376163', 'score': 0.18}, {'connected_gene': 'CDC14B', 'score': 0.15}]
chr9	GH09I096449	96449479	96451748	2.18	[{'connected_gene': 'HABP4', 'score': 564.31}, {'connected_gene': 'NUTM2G', 'score': 11.22}, {'connected_gene': 'ERCC6L2', 'score': 10.01}, {'connected_gene': 'ENSG00000271155', 'score': 9.83}, {'connected_gene': 'ANKRD18CP', 'score': 5.64}, {'connected_gene': 'CDC14B', 'score': 2.2}, {'connected_gene': 'ZNF510', 'score': 1.68}, {'connected_gene': 'LOC105376163', 'score': 0.11}]
chr9	GH09I096498	96498234	96500285	0.46	[{'connected_gene': 'HABP4', 'score': 12.06}, {'connected_gene': 'HSD17B3', 'score': 4.86}, {'connected_gene': 'CDC14B', 'score': 4.31}, {'connected_gene': 'LOC105376163', 'score': 0.15}]
chr9	GH09I096338	96338479	96341869	1.16	[{'connected_gene': 'HABP4', 'score': 8.23}, {'connected_gene': 'HSD17B3', 'score': 0.31}, {'connected_gene': 'SLC35D2', 'score': 0.26}]
chr9	GH09I096519	96519879	96520028	0.2	[{'connected_gene': 'HABP4', 'score': 12.07}, {'connected_gene': 'HSD17B3', 'score': 10.03}, {'connected_gene': 'RNU6-1160P', 'score': 10.02}, {'connected_gene': 'LOC105376163', 'score': 0.18}, {'connected_gene': 'CDC14B', 'score': 0.15}]
chr9	GH09I096505	96505029	96506186	0.2	[{'connected_gene': 'HABP4', 'score': 12.04}, {'connected_gene': 'HSD17B3', 'score': 4.86}, {'connected_gene': 'LOC105376163', 'score': 0.16}, {'connected_gene': 'CDC14B', 'score': 0.14}]
chr9	GH09I096342	96342348	96345936	1.23	[{'connected_gene': 'HABP4', 'score': 7.53}, {'connected_gene': 'CDC14B', 'score': 6.88}, {'connected_gene': 'HSD17B3', 'score': 0.29}, {'connected_gene': 'SLC35D2', 'score': 0.28}]
chr9	GH09I096490	96490790	96493226	1.11	[{'connected_gene': 'HABP4', 'score': 12.9}, {'connected_gene': 'LOC105376163', 'score': 0.14}, {'connected_gene': 'CDC14B', 'score': 0.13}]
chr9	GH09I096508	96508063	96510783	0.43	[{'connected_gene': 'HABP4', 'score': 11.8}, {'connected_gene': 'LOC105376163', 'score': 0.16}, {'connected_gene': 'CDC14B', 'score': 0.14}]
chr9	GH09I096493	96493844	96494048	0.4	[{'connected_gene': 'HABP4', 'score': 11.67}, {'connected_gene': 'LOC105376163', 'score': 0.14}, {'connected_gene': 'CDC14B', 'score': 0.13}]
chr9	GH09I096501	96501519	96501668	0.4	[{'connected_gene': 'HABP4', 'score': 12.05}, {'connected_gene': 'LOC105376163', 'score': 0.15}, {'connected_gene': 'CDC14B', 'score': 0.13}]
chr9	GH09I096502	96502356	96503335	0.58	[{'connected_gene': 'HABP4', 'score': 0.23}, {'connected_gene': 'LOC105376163', 'score': 0.15}, {'connected_gene': 'CDC14B', 'score': 0.13}]
chr9	GH09I096494	96494999	96496204	0.51	[{'connected_gene': 'HABP4', 'score': 11.37}, {'connected_gene': 'LOC105376163', 'score': 0.15}, {'connected_gene': 'CDC14B', 'score': 0.13}]
chr9	GH09I096485	96485528	96488142	1.1	[{'connected_gene': 'HABP4', 'score': 12.9}, {'connected_gene': 'LOC105376163', 'score': 0.14}]
chr9	GH09I096462	96462419	96462917	0.31	[{'connected_gene': 'HABP4', 'score': 11.67}, {'connected_gene': 'LOC105376163', 'score': 0.12}]
chr9	GH09I096478	96478353	96479657	0.66	[{'connected_gene': 'HABP4', 'score': 13.72}, {'connected_gene': 'LOC105376163', 'score': 0.13}]
chr9	GH09I096482	96482999	96484979	0.66	[{'connected_gene': 'HABP4', 'score': 12.92}, {'connected_gene': 'LOC105376163', 'score': 0.13}]
chr9	GH09I096412	96412457	96414829	1.03	[{'connected_gene': 'HABP4', 'score': 9.57}, {'connected_gene': 'LOC100421693', 'score': 0.44}, {'connected_gene': 'ZNF367', 'score': 0.44}]
chr9	GH09I096398	96398239	96400138	0.69	[{'connected_gene': 'HABP4', 'score': 7.85}, {'connected_gene': 'LOC100421693', 'score': 0.44}, {'connected_gene': 'SLC35D2', 'score': 0.37}, {'connected_gene': 'ZNF367', 'score': 0.37}]
chr9	GH09I096437	96437159	96437308	0.31	[{'connected_gene': 'HABP4', 'score': 0.39}, {'connected_gene': 'PIR44583', 'score': 0.37}]
chr9	GH09I096438	96436239	96436388	0.69	[{'connected_gene': 'HABP4', 'score': 0.39}, {'connected_gene': 'PIR44583', 'score': 0.37}]
chr9	GH09I096424	96424867	96426294	0.52	[{'connected_gene': 'HABP4', 'score': 10.42}, {'connected_gene': 'PIR44583', 'score': 0.44}]
chr9	GH09I096436	96436866	96437140	0.67	[{'connected_gene': 'HABP4', 'score': 0.39}, {'connected_gene': 'PIR44583', 'score': 0.37}]
chr9	GH09I096521	96521905	96524405	0.65	[{'connected_gene': 'CDC14B', 'score': 11.15}, {'connected_gene': 'HSD17B3', 'score': 10.03}, {'connected_gene': 'RNU6-1160P', 'score': 10.02}, {'connected_gene': 'HABP4', 'score': 0.19}, {'connected_gene': 'LOC105376163', 'score': 0.18}]
chr9	GH09I096389	96389994	96392792	1.3	[{'connected_gene': 'ZNF367', 'score': 11.54}, {'connected_gene': 'HABP4', 'score': 8.59}, {'connected_gene': 'SLC35D2', 'score': 0.44}, {'connected_gene': 'LOC100421693', 'score': 0.37}]
chr9	GH09I096460	96460059	96461977	0.43	[{'connected_gene': 'ZNF367', 'score': 10.94}, {'connected_gene': 'HABP4', 'score': 0.39}, {'connected_gene': 'LOC105376163', 'score': 0.12}]
chr9	GH09I096552	96552640	96558249	1.03	[{'connected_gene': 'CDC14B', 'score': 16.89}, {'connected_gene': 'ENSG00000224848', 'score': 4.3}, {'connected_gene': 'HABP4', 'score': 3.27}, {'connected_gene': 'LOC105376163', 'score': 0.26}]
chr9	GH09I096565	96565546	96567868	2.01	[{'connected_gene': 'CDC14B', 'score': 554.68}, {'connected_gene': 'HABP4', 'score': 5.73}, {'connected_gene': 'LOC105376163', 'score': 0.29}]
chr9	GH09I096560	96560170	96560556	0.22	[{'connected_gene': 'CDC14B', 'score': 4.96}, {'connected_gene': 'ZNF782', 'score': 2.47}, {'connected_gene': 'LOC105376163', 'score': 0.28}, {'connected_gene': 'HABP4', 'score': 0.14}]
chr9	GH09I096331	96331339	96331528	0.31	[{'connected_gene': 'ZNF367', 'score': 11.08}, {'connected_gene': 'HSD17B3-AS1', 'score': 10.5}, {'connected_gene': 'HABP4', 'score': 7.62}, {'connected_gene': 'HSD17B3', 'score': 4.72}, {'connected_gene': 'SLC35D2', 'score': 0.23}]
chr9	GH09I096381	96381720	96386565	2.12	[{'connected_gene': 'SLC35D2', 'score': 550.77}, {'connected_gene': 'HABP4', 'score': 8.05}, {'connected_gene': 'LOC441455', 'score': 4.52}, {'connected_gene': 'CDC14B', 'score': 4.37}, {'connected_gene': 'LOC100421693', 'score': 0.34}, {'connected_gene': 'ZNF367', 'score': 0.29}]
chr9	GH09I096408	96408450	96409235	0.96	[{'connected_gene': 'LOC100421693', 'score': 550.77}, {'connected_gene': 'HABP4', 'score': 7.59}, {'connected_gene': 'ZNF367', 'score': 0.44}]
chr9	GH09I096423	96423462	96424453	0.6	[{'connected_gene': 'PIR44583', 'score': 0.77}, {'connected_gene': 'HABP4', 'score': 0.31}]
chr9	GH09I096416	96416280	96421674	2.59	[{'connected_gene': 'PIR44583', 'score': 550.77}, {'connected_gene': 'ZNF367', 'score': 550.77}, {'connected_gene': 'ERCC6L2', 'score': 44.59}, {'connected_gene': 'ENSG00000271155', 'score': 22.51}, {'connected_gene': 'ZNF782', 'score': 13.69}, {'connected_gene': 'ZNF322P1', 'score': 13.55}, {'connected_gene': 'EIF4BP3', 'score': 12.0}, {'connected_gene': 'ENSG00000254633', 'score': 11.99}, {'connected_gene': 'NUTM2G', 'score': 11.21}, {'connected_gene': 'MFSD14C', 'score': 10.91}, {'connected_gene': 'LOC441454', 'score': 10.59}, {'connected_gene': 'LOC100421693', 'score': 10.33}, {'connected_gene': 'HABP4', 'score': 10.26}, {'connected_gene': 'CDC14B', 'score': 4.11}]