PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380874	[[1610680, 1614127]]	[[1610680, 1612342]]
NM_001453	[[1610680, 1614132]]	[[1610680, 1612342]]

Promoter

Chrom	Start	End	Description
chr6	1610178	1610190	CAGE_peak_5_at_FOXC1_5end
chr6	1610293	1610310	CAGE_peak_1_at_FOXC1_5end
chr6	1612200	1612213	CAGE_peak_9_at_FOXC1_5end
chr6	1612219	1612239	CAGE_peak_8_at_FOXC1_5end
chr6	1612248	1612281	CAGE_peak_2_at_FOXC1_5end
chr6	1612284	1612295	CAGE_peak_10_at_FOXC1_5end
chr6	1612300	1612324	CAGE_peak_3_at_FOXC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I001608	1608859	1614727	2.43	[{'connected_gene': 'FOXC1', 'score': 558.8}, {'connected_gene': 'GC06P001611', 'score': 550.77}, {'connected_gene': 'GC06P001612', 'score': 550.77}, {'connected_gene': 'FOXQ1', 'score': 4.48}]
chr6	GH06I001708	1708801	1709601	0.58	[{'connected_gene': 'FOXC1', 'score': 14.27}, {'connected_gene': 'GC06P001721', 'score': 0.39}, {'connected_gene': 'PIR36904', 'score': 0.39}, {'connected_gene': 'GMDS', 'score': 0.03}]
chr6	GH06I001723	1723852	1725592	0.79	[{'connected_gene': 'FOXC1', 'score': 7.92}, {'connected_gene': 'GC06P001721', 'score': 0.77}, {'connected_gene': 'GC06M001726', 'score': 0.77}, {'connected_gene': 'GMDS', 'score': 0.03}]
chr6	GH06I001606	1606966	1607075	0.92	[{'connected_gene': 'FOXCUT', 'score': 550.77}, {'connected_gene': 'FOXC1', 'score': 0.77}]
chr6	GH06I001607	1607626	1607795	1.05	[{'connected_gene': 'FOXCUT', 'score': 0.77}, {'connected_gene': 'FOXC1', 'score': 0.77}]
chr6	GH06I001728	1728976	1729990	0.31	[{'connected_gene': 'GC06M001726', 'score': 550.77}, {'connected_gene': 'FOXC1', 'score': 5.09}, {'connected_gene': 'GC06P001781', 'score': 0.23}, {'connected_gene': 'GMDS', 'score': 0.03}]