PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000536066	[[2966846, 2968829], [2973485, 2974020]]	None
ENST00000342628	[[2966848, 2968829], [2970464, 2970578], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983691], [2986085, 2986152]]	[[2967803, 2968829], [2970464, 2970578], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983644]]
ENST00000361953	[[2966848, 2968829], [2973485, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983691], [2986085, 2986206]]	[[2967803, 2968829], [2973485, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983644]]
ENST00000359843	[[2966849, 2968829], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983691], [2986085, 2986107]]	[[2967803, 2968829], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983644]]
ENST00000535350	[[2968653, 2968829], [2973485, 2973661], [2973848, 2973921], [2974520, 2974565], [2975558, 2975687], [2977728, 2977747]]	[[2968653, 2968829], [2973485, 2973661], [2973848, 2973921], [2974520, 2974565], [2975558, 2975687], [2977728, 2977747]]
ENST00000366362	[[2972914, 2973661], [2973848, 2973876]]	None
ENST00000538564	[[2973597, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2983142, 2983380]]	[[2977915, 2977920], [2983142, 2983380]]
ENST00000537018	[[2974050, 2974111], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983303]]	None
ENST00000545049	[[2977396, 2977920], [2981261, 2981413], [2983142, 2983366]]	None
NM_202002	[[2966846, 2968829], [2970464, 2970578], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983691], [2986085, 2986321]]	[[2967803, 2968829], [2970464, 2970578], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983644]]
NM_021953	[[2966846, 2968829], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983691], [2986085, 2986321]]	[[2967803, 2968829], [2973485, 2973661], [2973848, 2973918], [2974520, 2974565], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983644]]
NM_202003	[[2966846, 2968829], [2973485, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983691], [2986085, 2986321]]	[[2967803, 2968829], [2973485, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2981261, 2981413], [2983142, 2983644]]
NM_001243088	[[2966846, 2968829], [2973485, 2973661], [2973848, 2973921], [2975558, 2975687], [2977728, 2977920], [2981261, 2981410], [2983142, 2983691], [2986085, 2986321]]	[[2967803, 2968829], [2973485, 2973661], [2973848, 2973921], [2975558, 2975687], [2977728, 2977920], [2981261, 2981410], [2983142, 2983644]]
NM_001243089	[[2966846, 2968829], [2973485, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2981261, 2981410], [2983142, 2983691], [2986085, 2986321]]	[[2967803, 2968829], [2973485, 2973661], [2973848, 2973918], [2975558, 2975687], [2977728, 2977920], [2981261, 2981410], [2983142, 2983644]]

Promoter

Chrom	Start	End	Description
chr12	2968536	2968539	CAGE_peak_3_at_FOXM1_5end
chr12	2986206	2986258	CAGE_peak_2_at_FOXM1_5end
chr12	2986275	2986363	CAGE_peak_1_at_FOXM1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I002980	2980889	2983744	0.66	[{'connected_gene': 'NRIP2', 'score': 10.46}, {'connected_gene': 'FOXM1', 'score': 10.07}, {'connected_gene': 'RHNO1', 'score': 10.07}, {'connected_gene': 'TULP3', 'score': 10.07}, {'connected_gene': 'ITFG2', 'score': 10.03}, {'connected_gene': 'ENSG00000250899', 'score': 7.41}, {'connected_gene': 'TEAD4', 'score': 6.99}, {'connected_gene': 'GC12P002971', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.22}]
chr12	GH12I002979	2979562	2980363	0.2	[{'connected_gene': 'NRIP2', 'score': 10.46}, {'connected_gene': 'FOXM1', 'score': 9.75}, {'connected_gene': 'RHNO1', 'score': 9.75}, {'connected_gene': 'TULP3', 'score': 9.75}, {'connected_gene': 'ITFG2', 'score': 9.17}, {'connected_gene': 'TEAD4', 'score': 6.78}, {'connected_gene': 'ENSG00000250899', 'score': 6.67}, {'connected_gene': 'GC12P002971', 'score': 0.39}, {'connected_gene': 'GC12M003040', 'score': 0.21}]
chr12	GH12I002876	2876014	2879331	2.03	[{'connected_gene': 'TULP3', 'score': 591.91}, {'connected_gene': 'RHNO1', 'score': 574.57}, {'connected_gene': 'FOXM1', 'score': 550.77}, {'connected_gene': 'ITFG2', 'score': 64.04}, {'connected_gene': 'DCP1B', 'score': 29.18}, {'connected_gene': 'CBX3P4', 'score': 28.2}, {'connected_gene': 'ITFG2-AS1', 'score': 13.03}, {'connected_gene': 'NRIP2', 'score': 10.72}, {'connected_gene': 'RPS27P3', 'score': 10.71}, {'connected_gene': 'IQSEC3P1', 'score': 10.6}, {'connected_gene': 'FKBP4', 'score': 10.03}, {'connected_gene': 'GC12M002869', 'score': 0.77}]
chr12	GH12I002990	2990299	2993855	0.31	[{'connected_gene': 'TEAD4', 'score': 12.02}, {'connected_gene': 'RNU6-1315P', 'score': 12.0}, {'connected_gene': 'NRIP2', 'score': 10.95}, {'connected_gene': 'TSPAN9', 'score': 10.41}, {'connected_gene': 'TULP3', 'score': 10.04}, {'connected_gene': 'FOXM1', 'score': 10.04}, {'connected_gene': 'RHNO1', 'score': 10.03}, {'connected_gene': 'ITFG2', 'score': 9.72}, {'connected_gene': 'GC12P002971', 'score': 0.34}, {'connected_gene': 'GC12M003040', 'score': 0.25}]
chr12	GH12I002824	2824695	2827253	0.38	[{'connected_gene': 'FKBP4', 'score': 11.45}, {'connected_gene': 'CBX3P4', 'score': 11.21}, {'connected_gene': 'FOXM1', 'score': 10.79}, {'connected_gene': 'RHNO1', 'score': 10.79}, {'connected_gene': 'TULP3', 'score': 10.79}, {'connected_gene': 'NRIP2', 'score': 6.37}, {'connected_gene': 'ENSG00000256150', 'score': 0.39}, {'connected_gene': 'ITFG2', 'score': 0.39}]
chr12	GH12I002868	2868052	2868204	0.38	[{'connected_gene': 'FOXM1', 'score': 0.44}, {'connected_gene': 'RHNO1', 'score': 0.44}, {'connected_gene': 'TEX52', 'score': 0.39}]
chr12	GH12I003030	3030333	3034844	1.08	[{'connected_gene': 'TSPAN9', 'score': 11.5}, {'connected_gene': 'NRIP2', 'score': 11.34}, {'connected_gene': 'TULP3', 'score': 10.57}, {'connected_gene': 'FOXM1', 'score': 10.57}, {'connected_gene': 'RHNO1', 'score': 10.57}, {'connected_gene': 'ITFG2', 'score': 10.08}, {'connected_gene': 'FKBP4', 'score': 10.07}, {'connected_gene': 'GC12M003040', 'score': 0.44}, {'connected_gene': 'GC12P002971', 'score': 0.21}, {'connected_gene': 'TEAD4', 'score': 0.19}]
chr12	GH12I003054	3054802	3056651	0.56	[{'connected_gene': 'TSPAN9', 'score': 11.59}, {'connected_gene': 'NRIP2', 'score': 10.2}, {'connected_gene': 'FOXM1', 'score': 9.93}, {'connected_gene': 'RHNO1', 'score': 9.93}, {'connected_gene': 'TULP3', 'score': 9.93}, {'connected_gene': 'ITFG2', 'score': 9.42}, {'connected_gene': 'PIR51354', 'score': 0.39}, {'connected_gene': 'RPL13AP24', 'score': 0.37}]
chr12	GH12I003084	3084129	3087405	1.23	[{'connected_gene': 'TSPAN9', 'score': 23.94}, {'connected_gene': 'FOXM1', 'score': 9.42}, {'connected_gene': 'RHNO1', 'score': 9.42}, {'connected_gene': 'TULP3', 'score': 9.42}, {'connected_gene': 'PIR34599', 'score': 0.77}, {'connected_gene': 'GC12P003091', 'score': 0.77}]
chr12	GH12I003083	3083401	3084104	1.02	[{'connected_gene': 'TSPAN9', 'score': 23.99}, {'connected_gene': 'CBX3P4', 'score': 12.49}, {'connected_gene': 'FOXM1', 'score': 9.42}, {'connected_gene': 'RHNO1', 'score': 9.42}, {'connected_gene': 'TULP3', 'score': 9.42}, {'connected_gene': 'PIR34599', 'score': 0.44}, {'connected_gene': 'GC12P003091', 'score': 0.44}]
chr12	GH12I002753	2753201	2753343	0.51	[{'connected_gene': 'IQSEC3P1', 'score': 555.53}, {'connected_gene': 'FKBP4', 'score': 10.33}, {'connected_gene': 'ITFG2', 'score': 10.3}, {'connected_gene': 'NRIP2', 'score': 9.86}, {'connected_gene': 'FOXM1', 'score': 8.97}, {'connected_gene': 'RHNO1', 'score': 8.97}, {'connected_gene': 'TULP3', 'score': 8.97}, {'connected_gene': 'ITFG2-AS1', 'score': 0.37}, {'connected_gene': 'ENSG00000256150', 'score': 0.22}]
chr12	GH12I002752	2752715	2752904	1	[{'connected_gene': 'IQSEC3P1', 'score': 550.77}, {'connected_gene': 'FKBP4', 'score': 10.33}, {'connected_gene': 'ITFG2', 'score': 10.3}, {'connected_gene': 'NRIP2', 'score': 9.86}, {'connected_gene': 'FOXM1', 'score': 8.97}, {'connected_gene': 'RHNO1', 'score': 8.97}, {'connected_gene': 'TULP3', 'score': 8.97}, {'connected_gene': 'LOC100422463', 'score': 0.39}, {'connected_gene': 'ENSG00000256150', 'score': 0.21}]
chr12	GH12I003088	3088102	3089173	0.38	[{'connected_gene': 'PIR34599', 'score': 550.77}, {'connected_gene': 'GC12P003091', 'score': 550.77}, {'connected_gene': 'TSPAN9', 'score': 20.63}, {'connected_gene': 'FOXM1', 'score': 9.41}, {'connected_gene': 'RHNO1', 'score': 9.41}, {'connected_gene': 'TULP3', 'score': 9.41}]