PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000334793	[[47901688, 47906363]]	[[47903807, 47905295]]
NM_004474	[[47901688, 47906363]]	[[47903807, 47905295]]

Promoter

Chrom	Start	End	Description
chr1	47903709	47903764	CAGE_peak_4_at_FOXD2_5end
chr1	47903765	47903783	CAGE_peak_5_at_FOXD2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I047700	47700939	47703868	0.49	[{'connected_gene': 'FOXD2-AS1', 'score': 11.4}, {'connected_gene': 'FOXD2', 'score': 11.4}, {'connected_gene': 'LINC01738', 'score': 7.47}, {'connected_gene': 'PIR52707', 'score': 0.44}, {'connected_gene': 'GC01P047709', 'score': 0.44}]
chr1	GH01I047695	47695937	47700565	0.99	[{'connected_gene': 'FOXD2-AS1', 'score': 11.4}, {'connected_gene': 'FOXD2', 'score': 11.4}, {'connected_gene': 'LINC01389', 'score': 10.61}, {'connected_gene': 'FOXE3', 'score': 10.6}, {'connected_gene': 'LINC01738', 'score': 0.44}, {'connected_gene': 'PIR52707', 'score': 0.39}, {'connected_gene': 'GC01P047709', 'score': 0.39}]
chr1	GH01I047477	47477229	47478694	0.92	[{'connected_gene': 'FOXD2-AS1', 'score': 11.4}, {'connected_gene': 'FOXD2', 'score': 11.4}, {'connected_gene': 'LINC01389', 'score': 10.8}, {'connected_gene': 'FOXE3', 'score': 10.74}, {'connected_gene': 'LINC00853', 'score': 9.15}, {'connected_gene': 'CYP4A22-AS1', 'score': 9.15}, {'connected_gene': 'ENSG00000271355', 'score': 0.44}, {'connected_gene': 'GC01M047436', 'score': 0.26}]
chr1	GH01I047758	47758403	47759991	1.23	[{'connected_gene': 'FOXD2-AS1', 'score': 9.53}, {'connected_gene': 'FOXD2', 'score': 9.53}, {'connected_gene': 'ENSG00000225028', 'score': 5.12}, {'connected_gene': 'ENSG00000223814', 'score': 0.44}, {'connected_gene': 'GC01M047709', 'score': 0.29}]
chr1	GH01I047752	47752001	47752200	0.4	[{'connected_gene': 'FOXD2-AS1', 'score': 10.77}, {'connected_gene': 'FOXD2', 'score': 10.77}, {'connected_gene': 'ENSG00000223814', 'score': 0.39}, {'connected_gene': 'GC01M047709', 'score': 0.31}]
chr1	GH01I047253	47253511	47254946	0.72	[{'connected_gene': 'TAL1', 'score': 12.44}, {'connected_gene': 'ENSG00000226252', 'score': 12.42}, {'connected_gene': 'CMPK1', 'score': 11.96}, {'connected_gene': 'LINC00853', 'score': 11.03}, {'connected_gene': 'CYP4A22-AS1', 'score': 11.03}, {'connected_gene': 'FOXD2-AS1', 'score': 9.64}, {'connected_gene': 'FOXD2', 'score': 9.64}, {'connected_gene': 'GC01M047285', 'score': 0.29}, {'connected_gene': 'STIL', 'score': 0.21}]
chr1	GH01I047252	47252433	47252753	0.53	[{'connected_gene': 'CMPK1', 'score': 15.85}, {'connected_gene': 'TAL1', 'score': 12.44}, {'connected_gene': 'ENSG00000226252', 'score': 12.42}, {'connected_gene': 'LINC00853', 'score': 11.03}, {'connected_gene': 'CYP4A22-AS1', 'score': 11.03}, {'connected_gene': 'FOXD2-AS1', 'score': 9.65}, {'connected_gene': 'FOXD2', 'score': 9.65}, {'connected_gene': 'GC01M047285', 'score': 0.29}, {'connected_gene': 'STIL', 'score': 0.21}]
chr1	GH01I047332	47332179	47336398	2.53	[{'connected_gene': 'CMPK1', 'score': 563.39}, {'connected_gene': 'ENSG00000226252', 'score': 16.74}, {'connected_gene': 'FOXE3', 'score': 16.2}, {'connected_gene': 'TAL1', 'score': 11.51}, {'connected_gene': 'LINC01389', 'score': 10.08}, {'connected_gene': 'PDZK1IP1', 'score': 6.51}, {'connected_gene': 'FOXD2', 'score': 4.62}, {'connected_gene': 'GC01P047350', 'score': 0.37}]
chr1	GH01I047436	47436049	47438601	1.76	[{'connected_gene': 'LINC01389', 'score': 556.84}, {'connected_gene': 'GC01M047436', 'score': 550.77}, {'connected_gene': 'FOXD2', 'score': 550.77}, {'connected_gene': 'CMPK1', 'score': 8.46}]
chr1	GH01I047440	47440131	47441171	0.46	[{'connected_gene': 'LINC01389', 'score': 6.78}, {'connected_gene': 'GC01M047436', 'score': 0.77}, {'connected_gene': 'FOXD2', 'score': 0.77}, {'connected_gene': 'ENSG00000271355', 'score': 0.26}]
chr1	GH01I047685	47685023	47685632	0.71	[{'connected_gene': 'LINC01389', 'score': 9.83}, {'connected_gene': 'FOXE3', 'score': 9.83}, {'connected_gene': 'FOXD2-AS1', 'score': 9.47}, {'connected_gene': 'FOXD2', 'score': 9.47}, {'connected_gene': 'LINC01738', 'score': 0.77}, {'connected_gene': 'GC01P047675', 'score': 0.44}]
chr1	GH01I047188	47188961	47193508	1.88	[{'connected_gene': 'PDZK1IP1', 'score': 575.53}, {'connected_gene': 'ENSG00000226252', 'score': 12.94}, {'connected_gene': 'TAL1', 'score': 12.91}, {'connected_gene': 'FOXE3', 'score': 11.4}, {'connected_gene': 'LINC01389', 'score': 11.39}, {'connected_gene': 'FOXD2-AS1', 'score': 10.0}, {'connected_gene': 'FOXD2', 'score': 10.0}, {'connected_gene': 'GC01M047220', 'score': 0.29}]