PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000298767	[[88195012, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88211723, 88211888], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230860], [88231964, 88232101], [88232368, 88232521], [88233634, 88233730], [88256957, 88257076], [88259474, 88260500], [88277327, 88277848], [88281121, 88281572]]	[[88197299, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88211723, 88211888], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230860], [88231964, 88232101], [88232368, 88232521], [88233634, 88233730], [88256957, 88257076], [88259474, 88260500], [88277327, 88277826]]
ENST00000372075	[[88196766, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227265]]	[[88197299, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227206]]
ENST00000263070	[[88196769, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230766]]	[[88197299, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227206]]
ENST00000484070	[[88195012, 88197365], [88197676, 88197772], [88203031, 88203789]]	None
ENST00000495124	[[88211773, 88211888], [88212976, 88213092], [88213412, 88213638]]	None
ENST00000489996	[[88226809, 88227263], [88230748, 88230860], [88231964, 88232044]]	None
NM_015045	[[88195012, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88211723, 88211888], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230860], [88231964, 88232101], [88232368, 88232521], [88233634, 88233730], [88256957, 88257076], [88259474, 88260500], [88277327, 88277848], [88281121, 88281541]]	[[88197299, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88211723, 88211888], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230860], [88231964, 88232101], [88232368, 88232521], [88233634, 88233730], [88256957, 88257076], [88259474, 88260500], [88277327, 88277826]]
NM_001318328	[[88195012, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88211723, 88211888], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230860], [88231964, 88232101], [88232368, 88232521], [88233634, 88233730], [88256957, 88257058], [88259474, 88260500], [88277327, 88277848], [88281121, 88281541]]	[[88197299, 88197365], [88197676, 88197772], [88203031, 88203120], [88205998, 88206206], [88211723, 88211888], [88212976, 88213092], [88213412, 88213588], [88218745, 88218822], [88220155, 88220253], [88220932, 88221044], [88227035, 88227263], [88230748, 88230860], [88231964, 88232101], [88232368, 88232521], [88233634, 88233730], [88256957, 88257058], [88259474, 88260500], [88277327, 88277826]]

Promoter

Chrom	Start	End	Description
chr10	88213488	88213506	CAGE_peak_6_at_WAPAL_5end
chr10	88281494	88281570	CAGE_peak_1_at_WAPAL_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I087341	87341000	87344001	1.44	[{'connected_gene': 'NUTM2A-AS1', 'score': 566.02}, {'connected_gene': 'GC10P087344', 'score': 550.77}, {'connected_gene': 'GC10P087345', 'score': 550.77}, {'connected_gene': 'LINC00863', 'score': 550.77}, {'connected_gene': 'WAPL', 'score': 15.76}, {'connected_gene': 'NUTM2D', 'score': 12.28}, {'connected_gene': 'NUTM2A', 'score': 8.7}]
chr10	GH10I087090	87090809	87096982	2.31	[{'connected_gene': 'FAM35A', 'score': 570.9}, {'connected_gene': 'GLUD1', 'score': 550.77}, {'connected_gene': 'NUTM2A-AS1', 'score': 36.57}, {'connected_gene': 'ENSG00000272631', 'score': 34.41}, {'connected_gene': 'WAPL', 'score': 24.98}, {'connected_gene': 'BMPR1A', 'score': 22.65}, {'connected_gene': 'CFL1P1', 'score': 20.56}, {'connected_gene': 'RPL11P3', 'score': 11.19}, {'connected_gene': 'ENSG00000227896', 'score': 10.93}, {'connected_gene': 'BMS1P3', 'score': 10.43}, {'connected_gene': 'ADIRF-AS1', 'score': 9.84}, {'connected_gene': 'OPN4', 'score': 7.62}, {'connected_gene': 'NUTM2A', 'score': 7.49}, {'connected_gene': 'GC10M087058', 'score': 0.29}]
chr10	GH10I086328	86328226	86333330	0.54	[{'connected_gene': 'GRID1', 'score': 12.54}, {'connected_gene': 'MMRN2', 'score': 5.11}, {'connected_gene': 'WAPL', 'score': 4.35}, {'connected_gene': 'MIR346', 'score': 0.2}]
chr10	GH10I086389	86389201	86390713	0.87	[{'connected_gene': 'WAPL', 'score': 5.51}, {'connected_gene': 'OPN4', 'score': 4.43}, {'connected_gene': 'LDB3', 'score': 4.28}, {'connected_gene': 'GC10M086380', 'score': 0.44}, {'connected_gene': 'GC10P086443', 'score': 0.23}]
chr10	GH10I086436	86436572	86443907	1.34	[{'connected_gene': 'RNU6-780P', 'score': 11.72}, {'connected_gene': 'ENSG00000227896', 'score': 11.46}, {'connected_gene': 'WAPL', 'score': 11.46}, {'connected_gene': 'LDB3', 'score': 6.39}, {'connected_gene': 'OPN4', 'score': 5.53}, {'connected_gene': 'BMPR1A', 'score': 4.71}, {'connected_gene': 'GC10P086443', 'score': 0.77}, {'connected_gene': 'GC10M086380', 'score': 0.22}]
chr10	GH10I086435	86435257	86435459	0.4	[{'connected_gene': 'RNU6-780P', 'score': 11.71}, {'connected_gene': 'ENSG00000227896', 'score': 11.38}, {'connected_gene': 'WAPL', 'score': 11.38}, {'connected_gene': 'GC10P086443', 'score': 0.44}, {'connected_gene': 'GC10M086380', 'score': 0.23}]
chr10	GH10I086449	86449517	86450765	0.43	[{'connected_gene': 'RNU6-780P', 'score': 12.2}, {'connected_gene': 'ENSG00000227896', 'score': 11.5}, {'connected_gene': 'WAPL', 'score': 11.5}, {'connected_gene': 'GC10P086443', 'score': 0.44}, {'connected_gene': 'GC10P086489', 'score': 0.28}]
chr10	GH10I086752	86752404	86759776	2.75	[{'connected_gene': 'ENSG00000272631', 'score': 578.45}, {'connected_gene': 'BMPR1A', 'score': 561.74}, {'connected_gene': 'GC10M086750', 'score': 550.77}, {'connected_gene': 'WAPL', 'score': 33.14}, {'connected_gene': 'NUTM2A-AS1', 'score': 22.45}, {'connected_gene': 'ENSG00000227896', 'score': 20.64}, {'connected_gene': 'FAM35A', 'score': 11.35}, {'connected_gene': 'GLUD1', 'score': 2.07}]
chr10	GH10I086399	86399444	86403362	1.75	[{'connected_gene': 'ENSG00000227896', 'score': 19.6}, {'connected_gene': 'ENSG00000272631', 'score': 18.35}, {'connected_gene': 'GRID1', 'score': 17.14}, {'connected_gene': 'WAPL', 'score': 4.49}, {'connected_gene': 'LDB3', 'score': 4.18}, {'connected_gene': 'OPN4', 'score': 2.69}, {'connected_gene': 'GC10M086380', 'score': 0.34}, {'connected_gene': 'GC10P086443', 'score': 0.26}]
chr10	GH10I086594	86594560	86595102	0.69	[{'connected_gene': 'ENSG00000227896', 'score': 11.01}, {'connected_gene': 'WAPL', 'score': 11.01}, {'connected_gene': 'ENSG00000272631', 'score': 6.48}, {'connected_gene': 'GC10P086567', 'score': 0.31}, {'connected_gene': 'RPL7AP8', 'score': 0.28}]
chr10	GH10I086592	86592217	86593383	0.43	[{'connected_gene': 'ENSG00000227896', 'score': 11.01}, {'connected_gene': 'WAPL', 'score': 11.01}, {'connected_gene': 'ENSG00000272631', 'score': 6.48}, {'connected_gene': 'GC10P086567', 'score': 0.31}, {'connected_gene': 'RPL7AP8', 'score': 0.28}]
chr10	GH10I086519	86519521	86523112	1.99	[{'connected_gene': 'GC10M086520', 'score': 550.77}, {'connected_gene': 'ENSG00000227896', 'score': 550.77}, {'connected_gene': 'GC10M086521', 'score': 550.77}, {'connected_gene': 'WAPL', 'score': 550.77}, {'connected_gene': 'LDB3', 'score': 6.41}, {'connected_gene': 'GLUD1', 'score': 4.53}, {'connected_gene': 'GC10P086518', 'score': 0.77}, {'connected_gene': 'GC10P086490', 'score': 0.29}]
chr10	GH10I086585	86585123	86585870	1.04	[{'connected_gene': 'ENSG00000227896', 'score': 11.18}, {'connected_gene': 'WAPL', 'score': 11.18}, {'connected_gene': 'RNU6-780P', 'score': 10.99}, {'connected_gene': 'MIR346', 'score': 9.29}, {'connected_gene': 'OPN4', 'score': 6.3}, {'connected_gene': 'GC10P086567', 'score': 0.37}, {'connected_gene': 'RPL7AP8', 'score': 0.25}]
chr10	GH10I086518	86518801	86519000	0.31	[{'connected_gene': 'GC10M086520', 'score': 550.77}, {'connected_gene': 'GC10P086518', 'score': 550.77}, {'connected_gene': 'WAPL', 'score': 0.77}, {'connected_gene': 'GC10P086490', 'score': 0.29}]
chr10	GH10I086461	86461906	86462473	0.2	[{'connected_gene': 'GC10P086443', 'score': 0.37}, {'connected_gene': 'GC10P086489', 'score': 0.31}, {'connected_gene': 'WAPL', 'score': 0.22}]
chr10	GH10I086506	86506465	86507052	0.43	[{'connected_gene': 'GC10M086492', 'score': 0.39}, {'connected_gene': 'GC10P086518', 'score': 0.39}, {'connected_gene': 'GC10P086490', 'score': 0.37}, {'connected_gene': 'WAPL', 'score': 0.37}]
chr10	GH10I086309	86309579	86320829	0.75	[{'connected_gene': 'ENSG00000227896', 'score': 16.61}, {'connected_gene': 'ADIRF-AS1', 'score': 12.22}, {'connected_gene': 'GRID1', 'score': 11.92}, {'connected_gene': 'MIR346', 'score': 11.5}, {'connected_gene': 'WAPL', 'score': 11.36}, {'connected_gene': 'MMRN2', 'score': 5.39}, {'connected_gene': 'LDB3', 'score': 4.84}, {'connected_gene': 'OPN4', 'score': 4.44}]