PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000305364	[[27142403, 27145644], [27146678, 27146797], [27147672, 27147695], [27151596, 27151827], [27155980, 27156076], [27168317, 27168836]]	[[27145066, 27145644], [27146678, 27146797], [27147672, 27147695], [27151596, 27151827], [27155980, 27156076], [27168317, 27168752]]
ENST00000521283	[[27143325, 27143654], [27145552, 27145644], [27146678, 27146797], [27147672, 27147695], [27151596, 27151652]]	[[27143642, 27143654], [27145552, 27145644], [27146678, 27146797], [27147672, 27147695], [27151596, 27151652]]
ENST00000521253	[[27145217, 27145644], [27146678, 27146797], [27151596, 27151827], [27168317, 27168755]]	[[27145628, 27145644], [27146678, 27146797], [27151596, 27151827], [27168317, 27168752]]
ENST00000519219	[[27151556, 27151827], [27155980, 27156076], [27168317, 27168373]]	None
NM_171982	[[27142402, 27145644], [27146678, 27146797], [27147672, 27147695], [27151596, 27151827], [27155980, 27156076], [27168317, 27168836]]	[[27145066, 27145644], [27146678, 27146797], [27147672, 27147695], [27151596, 27151827], [27155980, 27156076], [27168317, 27168752]]
NM_001304495	[[27142402, 27145644], [27146678, 27146797], [27151596, 27151827], [27168317, 27168836]]	[[27145628, 27145644], [27146678, 27146797], [27151596, 27151827], [27168317, 27168752]]

Promoter

Chrom	Start	End	Description
chr8	27168737	27168810	CAGE_peak_1_at_TRIM35_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I027260	27260348	27263442	0.57	[{'connected_gene': 'STMN4', 'score': 7.58}, {'connected_gene': 'TRIM35', 'score': 6.19}, {'connected_gene': 'PTK2B', 'score': 5.04}, {'connected_gene': 'PIR41134', 'score': 0.34}]
chr8	GH08I027280	27280652	27282745	1.2	[{'connected_gene': 'STMN4', 'score': 11.2}, {'connected_gene': 'TRIM35', 'score': 9.28}, {'connected_gene': 'PTK2B', 'score': 8.46}, {'connected_gene': 'PIR41134', 'score': 0.77}]
chr8	GH08I027299	27299396	27300582	1.07	[{'connected_gene': 'STMN4', 'score': 11.15}, {'connected_gene': 'TRIM35', 'score': 9.95}, {'connected_gene': 'PIR41134', 'score': 0.39}]
chr8	GH08I027289	27289722	27290891	0.2	[{'connected_gene': 'STMN4', 'score': 11.16}, {'connected_gene': 'TRIM35', 'score': 10.67}, {'connected_gene': 'PIR41134', 'score': 0.77}]
chr8	GH08I027295	27295992	27297582	0.58	[{'connected_gene': 'STMN4', 'score': 10.98}, {'connected_gene': 'PTK2B', 'score': 6.24}, {'connected_gene': 'CHRNA2', 'score': 4.86}, {'connected_gene': 'TRIM35', 'score': 0.39}, {'connected_gene': 'PIR41134', 'score': 0.39}]
chr8	GH08I027267	27267898	27269665	0.58	[{'connected_gene': 'TRIM35', 'score': 7.56}, {'connected_gene': 'STMN4', 'score': 0.44}, {'connected_gene': 'PIR41134', 'score': 0.37}]
chr8	GH08I027273	27273944	27275200	1.34	[{'connected_gene': 'TRIM35', 'score': 9.32}, {'connected_gene': 'PIR41134', 'score': 0.39}, {'connected_gene': 'STMN4', 'score': 0.37}]
chr8	GH08I027308	27308366	27313009	2.26	[{'connected_gene': 'TRIM35', 'score': 560.18}, {'connected_gene': 'PTK2B', 'score': 550.77}, {'connected_gene': 'ELP3', 'score': 9.75}, {'connected_gene': 'CHRNA2', 'score': 4.94}, {'connected_gene': 'EPHX2', 'score': 4.35}, {'connected_gene': 'PIR41134', 'score': 0.34}]
chr8	GH08I027413	27413158	27413955	0.51	[{'connected_gene': 'TRIM35', 'score': 12.45}, {'connected_gene': 'PTK2B', 'score': 12.45}, {'connected_gene': 'CHRNA2', 'score': 11.02}, {'connected_gene': 'EPHX2', 'score': 11.0}, {'connected_gene': 'CLU', 'score': 10.47}, {'connected_gene': 'MIR6842', 'score': 0.37}]
chr8	GH08I027314	27314904	27316172	1.41	[{'connected_gene': 'TRIM35', 'score': 10.17}, {'connected_gene': 'CHRNA2', 'score': 4.93}, {'connected_gene': 'PTK2B', 'score': 0.77}, {'connected_gene': 'MIR6842', 'score': 0.13}]
chr8	GH08I027330	27330578	27336820	1.71	[{'connected_gene': 'PTK2B', 'score': 25.74}, {'connected_gene': 'TRIM35', 'score': 21.61}, {'connected_gene': 'EPHX2', 'score': 17.42}, {'connected_gene': 'CLU', 'score': 9.88}, {'connected_gene': 'CHRNA2', 'score': 9.86}, {'connected_gene': 'MIR6842', 'score': 0.15}]
chr8	GH08I027414	27414938	27425193	0.65	[{'connected_gene': 'PTK2B', 'score': 22.81}, {'connected_gene': 'TRIM35', 'score': 12.45}, {'connected_gene': 'EPHX2', 'score': 11.3}, {'connected_gene': 'CHRNA2', 'score': 11.04}, {'connected_gene': 'CLU', 'score': 10.47}, {'connected_gene': 'LOC105379337', 'score': 9.68}, {'connected_gene': 'MIR6842', 'score': 0.39}]
chr8	GH08I027324	27324686	27328951	2.07	[{'connected_gene': 'PTK2B', 'score': 550.37}, {'connected_gene': 'CLU', 'score': 10.37}, {'connected_gene': 'TRIM35', 'score': 8.85}, {'connected_gene': 'MIR6842', 'score': 0.14}]
chr8	GH08I027321	27321933	27324383	1.11	[{'connected_gene': 'EPHX2', 'score': 11.02}, {'connected_gene': 'CLU', 'score': 10.37}, {'connected_gene': 'CHRNA2', 'score': 10.34}, {'connected_gene': 'TRIM35', 'score': 7.9}, {'connected_gene': 'PTK2B', 'score': 0.39}, {'connected_gene': 'MIR6842', 'score': 0.14}]
chr8	GH08I027317	27317546	27317931	0.4	[{'connected_gene': 'CHRNA2', 'score': 10.27}, {'connected_gene': 'EPHX2', 'score': 10.27}, {'connected_gene': 'CLU', 'score': 9.94}, {'connected_gene': 'TRIM35', 'score': 9.63}, {'connected_gene': 'PTK2B', 'score': 0.44}, {'connected_gene': 'MIR6842', 'score': 0.13}]
chr8	GH08I027286	27286557	27287440	0.63	[{'connected_gene': 'PIR41134', 'score': 550.77}, {'connected_gene': 'STMN4', 'score': 11.17}, {'connected_gene': 'TRIM35', 'score': 5.3}]