PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000343882	[[108881037, 108881218], [108882288, 108883032], [108984657, 108986092], [109001029, 109005977]]	[[108882411, 108883032], [108984657, 108986058]]
ENST00000406360	[[108882068, 108883032], [108984657, 108986092], [109001029, 109005971]]	[[108882411, 108883032], [108984657, 108986058]]
ENST00000540898	[[108977548, 108977741], [108984657, 108986092], [109001029, 109001954]]	[[108984696, 108986058]]
NM_201559	[[108881025, 108881218], [108882288, 108883032], [108984657, 108986092], [109001029, 109005971]]	[[108882411, 108883032], [108984657, 108986058]]
NM_001455	[[108882068, 108883032], [108984657, 108986092], [109001029, 109005971]]	[[108882411, 108883032], [108984657, 108986058]]

Promoter

Chrom	Start	End	Description
chr6	108880956	108881011	CAGE_peak_1_at_FOXO3_5end
chr6	108881012	108881034	CAGE_peak_3_at_FOXO3_5end
chr6	108882076	108882087	CAGE_peak_6_at_FOXO3_5end
chr6	108882109	108882173	CAGE_peak_2_at_FOXO3_5end
chr6	108882175	108882186	CAGE_peak_10_at_FOXO3_5end
chr6	108882364	108882391	CAGE_peak_4_at_FOXO3_5end
chr6	108910863	108910912	CAGE_peak_8_at_FOXO3_5end
chr6	108977520	108977534	CAGE_peak_7_at_FOXO3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I108805	108805669	108806400	0.79	[{'connected_gene': 'ARMC2', 'score': 12.16}, {'connected_gene': 'RNU6-653P', 'score': 10.17}, {'connected_gene': 'FOXO3', 'score': 1.61}, {'connected_gene': 'RPL37AP3', 'score': 0.39}, {'connected_gene': 'ZNF259P1', 'score': 0.37}]
chr6	GH06I108895	108895141	108897799	1.49	[{'connected_gene': 'ARMC2', 'score': 26.59}, {'connected_gene': 'RNU6-653P', 'score': 11.36}, {'connected_gene': 'ARMC2-AS1', 'score': 11.32}, {'connected_gene': 'OSTM1-AS1', 'score': 4.65}, {'connected_gene': 'FOXO3', 'score': 2.78}, {'connected_gene': 'CD164', 'score': 1.59}, {'connected_gene': 'ATP5MFP2', 'score': 0.39}, {'connected_gene': 'RPS12P13', 'score': 0.28}]
chr6	GH06I109453	109453244	109461075	2.67	[{'connected_gene': 'MICAL1', 'score': 567.49}, {'connected_gene': 'SMPD2', 'score': 25.09}, {'connected_gene': 'ZBTB24', 'score': 23.32}, {'connected_gene': 'METTL24', 'score': 13.62}, {'connected_gene': 'ENSG00000260273', 'score': 13.29}, {'connected_gene': 'LOC105377935', 'score': 11.31}, {'connected_gene': 'FOXO3', 'score': 9.8}, {'connected_gene': 'FIG4', 'score': 4.91}, {'connected_gene': 'PPIL6', 'score': 2.34}, {'connected_gene': 'CD164', 'score': 2.08}, {'connected_gene': 'PIR52480', 'score': 0.77}]
chr6	GH06I108666	108666918	108667147	0.82	[{'connected_gene': 'LINC00222', 'score': 4.3}, {'connected_gene': 'GC06P108702', 'score': 0.39}, {'connected_gene': 'GC06P108619', 'score': 0.25}, {'connected_gene': 'FOXO3', 'score': 0.14}]
chr6	GH06I108643	108643179	108645184	0.31	[{'connected_gene': 'LINC00222', 'score': 4.38}, {'connected_gene': 'GC06P108619', 'score': 0.31}, {'connected_gene': 'GC06P108702', 'score': 0.28}, {'connected_gene': 'FOXO3', 'score': 0.18}]
chr6	GH06I108555	108555734	108567589	2.7	[{'connected_gene': 'FOXO3', 'score': 565.18}, {'connected_gene': 'PIR59886', 'score': 550.77}, {'connected_gene': 'ZBTB24', 'score': 54.91}, {'connected_gene': 'SMPD2', 'score': 20.13}, {'connected_gene': 'CD164', 'score': 11.11}, {'connected_gene': 'RNU6-653P', 'score': 10.69}, {'connected_gene': 'ENSG00000271730', 'score': 10.2}, {'connected_gene': 'SEC63', 'score': 9.89}, {'connected_gene': 'LINC00222', 'score': 5.03}, {'connected_gene': 'SESN1', 'score': 4.0}, {'connected_gene': 'OSTM1', 'score': 1.13}, {'connected_gene': 'GC06M108618', 'score': 0.22}]
chr6	GH06I108779	108779616	108780010	0.33	[{'connected_gene': 'FOXO3', 'score': 3.73}, {'connected_gene': 'ZNF259P1', 'score': 0.44}, {'connected_gene': 'LINC00222', 'score': 0.31}]
chr6	GH06I108649	108649561	108657617	1.45	[{'connected_gene': 'FOXO3', 'score': 4.71}, {'connected_gene': 'LINC00222', 'score': 4.44}, {'connected_gene': 'GC06P108702', 'score': 0.31}, {'connected_gene': 'GC06P108619', 'score': 0.29}]
chr6	GH06I108451	108451917	108455269	0.63	[{'connected_gene': 'FOXO3', 'score': 4.5}, {'connected_gene': 'ENSG00000260273', 'score': 4.4}, {'connected_gene': 'GC06P108423', 'score': 0.29}, {'connected_gene': 'GC06P108424', 'score': 0.29}, {'connected_gene': 'ENSG00000271608', 'score': 0.15}, {'connected_gene': 'AFG1L', 'score': 0.1}]
chr6	GH06I108620	108620733	108623834	1.31	[{'connected_gene': 'FOXO3', 'score': 5.3}, {'connected_gene': 'GC06P108619', 'score': 0.77}, {'connected_gene': 'GC06P108702', 'score': 0.22}]
chr6	GH06I108732	108732095	108739308	1.47	[{'connected_gene': 'SEC63', 'score': 10.84}, {'connected_gene': 'ZBTB24', 'score': 10.76}, {'connected_gene': 'CEP57L1', 'score': 10.76}, {'connected_gene': 'FOXO3', 'score': 2.9}, {'connected_gene': 'LINC00222', 'score': 0.37}, {'connected_gene': 'PIR33619', 'score': 0.23}]
chr6	GH06I108574	108574622	108575186	0.73	[{'connected_gene': 'RNU6-653P', 'score': 9.56}, {'connected_gene': 'LINC00222', 'score': 4.15}, {'connected_gene': 'PIR59886', 'score': 0.39}, {'connected_gene': 'FOXO3', 'score': 0.37}, {'connected_gene': 'GC06M108618', 'score': 0.26}]
chr6	GH06I108585	108585388	108594799	1.52	[{'connected_gene': 'RNU6-653P', 'score': 10.06}, {'connected_gene': 'LINC00222', 'score': 4.15}, {'connected_gene': 'PIR59886', 'score': 0.31}, {'connected_gene': 'GC06M108618', 'score': 0.31}, {'connected_gene': 'FOXO3', 'score': 0.29}]
chr6	GH06I108571	108571476	108572401	0.31	[{'connected_gene': 'RNU6-653P', 'score': 9.56}, {'connected_gene': 'PIR59886', 'score': 0.39}, {'connected_gene': 'FOXO3', 'score': 0.39}, {'connected_gene': 'GC06M108618', 'score': 0.25}]
chr6	GH06I108584	108584001	108584200	0.4	[{'connected_gene': 'RNU6-653P', 'score': 10.06}, {'connected_gene': 'PIR59886', 'score': 0.34}, {'connected_gene': 'FOXO3', 'score': 0.34}, {'connected_gene': 'GC06M108618', 'score': 0.29}]
chr6	GH06I108557	108555560	108555587	0.66	[{'connected_gene': 'RNU6-653P', 'score': 10.68}, {'connected_gene': 'FOXO3', 'score': 0.77}, {'connected_gene': 'ENSG00000271608', 'score': 0.77}]
chr6	GH06I108556	108555438	108555547	0.66	[{'connected_gene': 'RNU6-653P', 'score': 10.68}, {'connected_gene': 'FOXO3', 'score': 0.77}, {'connected_gene': 'ENSG00000271608', 'score': 0.77}]
chr6	GH06I108578	108578081	108583199	1.39	[{'connected_gene': 'RNU6-653P', 'score': 10.3}, {'connected_gene': 'ARMC2-AS1', 'score': 9.28}, {'connected_gene': 'PIR59886', 'score': 0.37}, {'connected_gene': 'FOXO3', 'score': 0.34}, {'connected_gene': 'GC06M108618', 'score': 0.28}]
chr6	GH06I108635	108635600	108636200	1.03	[{'connected_gene': 'GC06P108619', 'score': 0.37}, {'connected_gene': 'GC06P108702', 'score': 0.25}, {'connected_gene': 'FOXO3', 'score': 0.18}]
chr6	GH06I108673	108673738	108673907	0.69	[{'connected_gene': 'GC06P108702', 'score': 0.44}, {'connected_gene': 'GC06P108619', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.14}]
chr6	GH06I108677	108677401	108677600	0.88	[{'connected_gene': 'GC06P108702', 'score': 0.77}, {'connected_gene': 'GC06P108619', 'score': 0.22}, {'connected_gene': 'FOXO3', 'score': 0.13}]
chr6	GH06I108661	108661058	108662364	1.23	[{'connected_gene': 'GC06P108702', 'score': 0.37}, {'connected_gene': 'GC06P108619', 'score': 0.26}, {'connected_gene': 'FOXO3', 'score': 0.15}]
chr6	GH06I108569	108569293	108569967	0.31	[{'connected_gene': 'PIR59886', 'score': 0.44}, {'connected_gene': 'FOXO3', 'score': 0.44}, {'connected_gene': 'GC06M108618', 'score': 0.25}]
chr6	GH06I108613	108613494	108615540	0.38	[{'connected_gene': 'GC06M108618', 'score': 0.77}, {'connected_gene': 'PIR59886', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.23}]
chr6	GH06I108675	108675201	108675600	0.66	[{'connected_gene': 'GC06P108702', 'score': 0.44}, {'connected_gene': 'GC06P108619', 'score': 0.22}, {'connected_gene': 'FOXO3', 'score': 0.13}]
chr6	GH06I108596	108596582	108599964	1.32	[{'connected_gene': 'GC06M108618', 'score': 0.34}, {'connected_gene': 'PIR59886', 'score': 0.28}, {'connected_gene': 'FOXO3', 'score': 0.28}]
chr6	GH06I108674	108673201	108673400	0.4	[{'connected_gene': 'GC06P108702', 'score': 0.44}, {'connected_gene': 'GC06P108619', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.14}]
chr6	GH06I108628	108627001	108627600	0.58	[{'connected_gene': 'GC06P108619', 'score': 0.44}, {'connected_gene': 'GC06P108702', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.2}]
chr6	GH06I108608	108608319	108610812	0.86	[{'connected_gene': 'GC06M108618', 'score': 0.44}, {'connected_gene': 'PIR59886', 'score': 0.25}, {'connected_gene': 'FOXO3', 'score': 0.25}]
chr6	GH06I108606	108606201	108606400	0.72	[{'connected_gene': 'GC06M108618', 'score': 0.39}, {'connected_gene': 'PIR59886', 'score': 0.25}, {'connected_gene': 'FOXO3', 'score': 0.25}]
chr6	GH06I108647	108647179	108647702	0.31	[{'connected_gene': 'GC06P108619', 'score': 0.31}, {'connected_gene': 'GC06P108702', 'score': 0.29}, {'connected_gene': 'FOXO3', 'score': 0.17}]
chr6	GH06I108575	108575804	108576748	0.85	[{'connected_gene': 'PIR59886', 'score': 0.37}, {'connected_gene': 'FOXO3', 'score': 0.37}, {'connected_gene': 'GC06M108618', 'score': 0.26}]
chr6	GH06I108630	108630138	108630706	1.23	[{'connected_gene': 'GC06P108619', 'score': 0.39}, {'connected_gene': 'GC06P108702', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.19}]
chr6	GH06I108645	108645737	108646465	0.31	[{'connected_gene': 'GC06P108619', 'score': 0.31}, {'connected_gene': 'GC06P108702', 'score': 0.28}, {'connected_gene': 'FOXO3', 'score': 0.17}]
chr6	GH06I108672	108672001	108672200	0.4	[{'connected_gene': 'GC06P108702', 'score': 0.44}, {'connected_gene': 'GC06P108619', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.14}]
chr6	GH06I108657	108657729	108658462	0.38	[{'connected_gene': 'GC06P108702', 'score': 0.34}, {'connected_gene': 'GC06P108619', 'score': 0.28}, {'connected_gene': 'FOXO3', 'score': 0.15}]
chr6	GH06I108576	108576761	108577799	0.74	[{'connected_gene': 'PIR59886', 'score': 0.37}, {'connected_gene': 'FOXO3', 'score': 0.37}, {'connected_gene': 'GC06M108618', 'score': 0.26}]
chr6	GH06I108627	108627800	108628001	0.58	[{'connected_gene': 'GC06P108619', 'score': 0.44}, {'connected_gene': 'GC06P108702', 'score': 0.23}, {'connected_gene': 'FOXO3', 'score': 0.2}]
chr6	GH06I108664	108664553	108666485	0.43	[{'connected_gene': 'GC06P108702', 'score': 0.37}, {'connected_gene': 'GC06P108619', 'score': 0.25}, {'connected_gene': 'FOXO3', 'score': 0.14}]
chr6	GH06I108568	108568801	108569000	0.4	[{'connected_gene': 'PIR59886', 'score': 0.44}, {'connected_gene': 'FOXO3', 'score': 0.44}, {'connected_gene': 'GC06M108618', 'score': 0.25}]
chr6	GH06I108967	108966601	108969214	1.32	[{'connected_gene': 'PIR34191', 'score': 550.77}, {'connected_gene': 'RNU6-653P', 'score': 10.88}, {'connected_gene': 'ARMC2-AS1', 'score': 10.6}, {'connected_gene': 'ENSG00000271730', 'score': 6.14}, {'connected_gene': 'AK9', 'score': 4.2}, {'connected_gene': 'FOXO3', 'score': 4.1}, {'connected_gene': 'MICAL1', 'score': 2.05}, {'connected_gene': 'SMPD2', 'score': 1.96}, {'connected_gene': 'ARMC2', 'score': 0.13}]
chr6	GH06I108618	108618801	108619000	0.69	[{'connected_gene': 'GC06P108619', 'score': 550.77}, {'connected_gene': 'GC06M108618', 'score': 550.77}, {'connected_gene': 'SUMO2P8', 'score': 550.77}, {'connected_gene': 'FOXO3', 'score': 0.22}]
chr6	GH06I108616	108616583	108617375	0.76	[{'connected_gene': 'GC06M108618', 'score': 550.77}, {'connected_gene': 'SUMO2P8', 'score': 550.77}, {'connected_gene': 'PIR59886', 'score': 0.22}, {'connected_gene': 'FOXO3', 'score': 0.22}]
chr6	GH06I108619	108619801	108620000	0.69	[{'connected_gene': 'GC06P108619', 'score': 550.77}, {'connected_gene': 'GC06M108618', 'score': 550.77}, {'connected_gene': 'SUMO2P8', 'score': 550.77}, {'connected_gene': 'GC06P108702', 'score': 0.21}, {'connected_gene': 'FOXO3', 'score': 0.21}]
chr6	GH06I108621	108619201	108619600	0.74	[{'connected_gene': 'GC06P108619', 'score': 550.77}, {'connected_gene': 'GC06M108618', 'score': 550.77}, {'connected_gene': 'SUMO2P8', 'score': 550.77}, {'connected_gene': 'FOXO3', 'score': 0.22}, {'connected_gene': 'GC06P108702', 'score': 0.21}]