PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000298492	[[126490353, 126490470], [126495399, 126495490], [126505144, 126505181], [126507952, 126508019], [126515163, 126515354], [126517324, 126517444], [126517961, 126518046], [126519917, 126520032], [126523070, 126525239]]	[[126490398, 126490470], [126495399, 126495490], [126505144, 126505181], [126507952, 126508019], [126515163, 126515354], [126517324, 126517444], [126517961, 126518046], [126519917, 126520032], [126523070, 126523540]]

Promoter

Chrom	Start	End	Description
chr10	126490369	126490395	CAGE_peak_1_at_FAM175B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I124635	124635728	124643335	1.56	[{'connected_gene': 'FAM53B', 'score': 27.8}, {'connected_gene': 'CHST15', 'score': 11.26}, {'connected_gene': 'ABRAXAS2', 'score': 10.64}, {'connected_gene': 'ZRANB1', 'score': 9.08}, {'connected_gene': 'EEF1AKMT2', 'score': 8.36}, {'connected_gene': 'GC10M124645', 'score': 0.39}, {'connected_gene': 'PIR48648', 'score': 0.39}, {'connected_gene': 'FAM53B-AS1', 'score': 0.21}, {'connected_gene': 'ENSG00000258539', 'score': 0.1}]
chr10	GH10I124731	124731241	124749625	2.69	[{'connected_gene': 'FAM53B', 'score': 561.7}, {'connected_gene': 'EEF1AKMT2', 'score': 66.63}, {'connected_gene': 'ENSG00000234134', 'score': 19.26}, {'connected_gene': 'EDRF1', 'score': 11.31}, {'connected_gene': 'ABRAXAS2', 'score': 11.08}, {'connected_gene': 'GC10P124736', 'score': 0.77}, {'connected_gene': 'ENSG00000258539', 'score': 0.23}]
chr10	GH10I124558	124558419	124561821	0.66	[{'connected_gene': 'FAM53B', 'score': 11.51}, {'connected_gene': 'EEF1AKMT2', 'score': 10.85}, {'connected_gene': 'ABRAXAS2', 'score': 10.15}, {'connected_gene': 'LHPP', 'score': 7.1}, {'connected_gene': 'LOC105378533', 'score': 5.19}, {'connected_gene': 'GC10P124539', 'score': 0.34}, {'connected_gene': 'PIR39838', 'score': 0.34}, {'connected_gene': 'LOC105378539', 'score': 0.22}]
chr10	GH10I124522	124522802	124524199	1.11	[{'connected_gene': 'FAM53B', 'score': 13.83}, {'connected_gene': 'EEF1AKMT2', 'score': 10.79}, {'connected_gene': 'ABRAXAS2', 'score': 10.68}, {'connected_gene': 'NKX1-2', 'score': 10.64}, {'connected_gene': 'LHPP', 'score': 7.4}, {'connected_gene': 'GC10P124510', 'score': 0.39}, {'connected_gene': 'GC10P124539', 'score': 0.37}, {'connected_gene': 'PIR39838', 'score': 0.37}]
chr10	GH10I124557	124557872	124558360	0.2	[{'connected_gene': 'FAM53B', 'score': 11.51}, {'connected_gene': 'EEF1AKMT2', 'score': 10.85}, {'connected_gene': 'ABRAXAS2', 'score': 10.15}, {'connected_gene': 'GC10P124539', 'score': 0.37}, {'connected_gene': 'PIR39838', 'score': 0.37}, {'connected_gene': 'LOC105378539', 'score': 0.22}, {'connected_gene': 'LHPP', 'score': 0.15}]
chr10	GH10I124551	124551952	124552622	0.31	[{'connected_gene': 'FAM53B', 'score': 11.51}, {'connected_gene': 'EEF1AKMT2', 'score': 10.84}, {'connected_gene': 'ABRAXAS2', 'score': 10.15}, {'connected_gene': 'GC10P124539', 'score': 0.39}, {'connected_gene': 'PIR39838', 'score': 0.39}, {'connected_gene': 'LOC105378539', 'score': 0.21}, {'connected_gene': 'LHPP', 'score': 0.16}]
chr10	GH10I124533	124532492	124532641	0.66	[{'connected_gene': 'FAM53B', 'score': 12.82}, {'connected_gene': 'ABRAXAS2', 'score': 10.84}, {'connected_gene': 'GC10P124539', 'score': 0.44}, {'connected_gene': 'PIR39838', 'score': 0.44}, {'connected_gene': 'GC10P124510', 'score': 0.34}, {'connected_gene': 'LHPP', 'score': 0.19}]
chr10	GH10I124534	124534202	124536751	1.07	[{'connected_gene': 'FAM53B', 'score': 17.51}, {'connected_gene': 'ABRAXAS2', 'score': 10.84}, {'connected_gene': 'EEF1AKMT2', 'score': 7.13}, {'connected_gene': 'LHPP', 'score': 6.94}, {'connected_gene': 'CHST15', 'score': 1.95}, {'connected_gene': 'GC10P124539', 'score': 0.77}, {'connected_gene': 'PIR39838', 'score': 0.77}, {'connected_gene': 'GC10P124510', 'score': 0.31}]
chr10	GH10I124532	124532212	124532401	0.65	[{'connected_gene': 'FAM53B', 'score': 12.82}, {'connected_gene': 'ABRAXAS2', 'score': 10.84}, {'connected_gene': 'EEF1AKMT2', 'score': 7.89}, {'connected_gene': 'LHPP', 'score': 7.28}, {'connected_gene': 'GC10P124539', 'score': 0.44}, {'connected_gene': 'PIR39838', 'score': 0.44}, {'connected_gene': 'GC10P124510', 'score': 0.34}]
chr10	GH10I124643	124643693	124645401	0.78	[{'connected_gene': 'FAM53B', 'score': 12.12}, {'connected_gene': 'ABRAXAS2', 'score': 10.65}, {'connected_gene': 'GC10M124645', 'score': 0.37}, {'connected_gene': 'PIR48648', 'score': 0.37}, {'connected_gene': 'FAM53B-AS1', 'score': 0.22}, {'connected_gene': 'ENSG00000258539', 'score': 0.11}]
chr10	GH10I123993	123993613	123998800	1.66	[{'connected_gene': 'CHST15', 'score': 79.75}, {'connected_gene': 'BUB3', 'score': 12.04}, {'connected_gene': 'EEF1AKMT2', 'score': 10.27}, {'connected_gene': 'ABRAXAS2', 'score': 10.04}, {'connected_gene': 'FAM53B', 'score': 7.44}, {'connected_gene': 'ENSG00000234677', 'score': 5.95}, {'connected_gene': 'YBX2P1', 'score': 0.77}, {'connected_gene': 'ENSG00000232334', 'score': 0.44}]
chr10	GH10I124323	124323256	124323419	0.87	[{'connected_gene': 'CHST15', 'score': 11.3}, {'connected_gene': 'ABRAXAS2', 'score': 1.98}, {'connected_gene': 'OAT', 'score': 0.15}, {'connected_gene': 'LOC105378536', 'score': 0.09}]
chr10	GH10I124714	124714748	124730847	1.76	[{'connected_gene': 'EEF1AKMT2', 'score': 46.41}, {'connected_gene': 'FAM53B', 'score': 34.6}, {'connected_gene': 'ABRAXAS2', 'score': 11.06}, {'connected_gene': 'ZRANB1', 'score': 1.76}, {'connected_gene': 'GC10P124736', 'score': 0.39}, {'connected_gene': 'GC10P124712', 'score': 0.39}, {'connected_gene': 'FAM53B-AS1', 'score': 0.37}, {'connected_gene': 'ENSG00000258539', 'score': 0.2}]
chr10	GH10I124524	124524965	124525639	0.92	[{'connected_gene': 'EEF1AKMT2', 'score': 16.57}, {'connected_gene': 'FAM53B', 'score': 11.93}, {'connected_gene': 'ABRAXAS2', 'score': 10.68}, {'connected_gene': 'NKX1-2', 'score': 10.63}, {'connected_gene': 'LHPP', 'score': 7.4}, {'connected_gene': 'GC10P124539', 'score': 0.39}, {'connected_gene': 'PIR39838', 'score': 0.39}, {'connected_gene': 'GC10P124510', 'score': 0.37}]
chr10	GH10I124674	124674616	124682194	1.25	[{'connected_gene': 'EEF1AKMT2', 'score': 22.5}, {'connected_gene': 'FAM53B', 'score': 2.33}, {'connected_gene': 'ABRAXAS2', 'score': 1.28}, {'connected_gene': 'FAM53B-AS1', 'score': 0.31}, {'connected_gene': 'GC10M124645', 'score': 0.23}, {'connected_gene': 'PIR48648', 'score': 0.23}, {'connected_gene': 'ENSG00000258539', 'score': 0.14}]
chr10	GH10I124307	124305652	124306166	0.99	[{'connected_gene': 'EEF1AKMT2', 'score': 11.54}, {'connected_gene': 'CTBP2', 'score': 10.81}, {'connected_gene': 'ABRAXAS2', 'score': 1.66}, {'connected_gene': 'CHST15', 'score': 1.36}, {'connected_gene': 'OAT', 'score': 0.14}, {'connected_gene': 'LOC105378536', 'score': 0.1}]
chr10	GH10I124493	124493601	124494600	0.31	[{'connected_gene': 'NKX1-2', 'score': 11.08}, {'connected_gene': 'ABRAXAS2', 'score': 10.8}, {'connected_gene': 'LHPP', 'score': 5.5}, {'connected_gene': 'RPS10P18', 'score': 0.77}, {'connected_gene': 'GC10P124510', 'score': 0.37}]
chr10	GH10I124305	124305195	124305453	0.66	[{'connected_gene': 'ABRAXAS2', 'score': 2.12}, {'connected_gene': 'CHST15', 'score': 1.6}, {'connected_gene': 'OAT', 'score': 0.14}, {'connected_gene': 'LOC105378536', 'score': 0.1}]
chr10	GH10I124529	124529708	124530919	1.13	[{'connected_gene': 'ABRAXAS2', 'score': 21.01}, {'connected_gene': 'EEF1AKMT2', 'score': 18.65}, {'connected_gene': 'FAM53B', 'score': 11.92}, {'connected_gene': 'NKX1-2', 'score': 10.62}, {'connected_gene': 'LHPP', 'score': 7.44}, {'connected_gene': 'GC10P124539', 'score': 0.44}, {'connected_gene': 'PIR39838', 'score': 0.44}, {'connected_gene': 'GC10P124510', 'score': 0.34}]
chr10	GH10I124603	124603756	124606979	1	[{'connected_gene': 'ABRAXAS2', 'score': 10.69}, {'connected_gene': 'EEF1AKMT2', 'score': 9.62}, {'connected_gene': 'LHPP', 'score': 9.01}, {'connected_gene': 'LOC105378539', 'score': 0.39}, {'connected_gene': 'GC10P124539', 'score': 0.2}, {'connected_gene': 'PIR39838', 'score': 0.2}]
chr10	GH10I124800	124800222	124803035	2.01	[{'connected_gene': 'ABRAXAS2', 'score': 550.77}, {'connected_gene': 'EEF1AKMT2', 'score': 18.65}]
chr10	GH10I125053	125053994	125066521	1.4	[{'connected_gene': 'ABRAXAS2', 'score': 10.4}, {'connected_gene': 'MIR4296', 'score': 0.31}, {'connected_gene': 'CTBP2', 'score': 0.15}]
chr10	GH10I124538	124538169	124539375	0.31	[{'connected_gene': 'GC10P124539', 'score': 550.77}, {'connected_gene': 'PIR39838', 'score': 550.77}, {'connected_gene': 'FAM53B', 'score': 12.83}, {'connected_gene': 'ABRAXAS2', 'score': 10.84}, {'connected_gene': 'LOC105378539', 'score': 0.18}, {'connected_gene': 'LHPP', 'score': 0.18}]