Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000441616 [[154073644, 154073764], [154191489, 154191671], [154197044, 154197282], [154214133, 154214176]] [[154191537, 154191671], [154197044, 154197282], [154214133, 154214176]]
ENST00000437508 [[154074269, 154074422], [154191489, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154257514]] [[154191537, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154256118]]
ENST00000496978 [[154125597, 154125712], [154143394, 154143821]] None
ENST00000479711 [[154125597, 154125712], [154191486, 154191671], [154197044, 154197282], [154216464, 154216835]] None
ENST00000494872 [[154125597, 154125712], [154191486, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154230806, 154231413]] None
ENST00000338700 [[154125617, 154125712], [154191486, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154260472]] [[154125682, 154125712], [154191486, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154256118]]
ENST00000491446 [[154073493, 154073764], [154077866, 154077965], [154078181, 154078324]] None
ENST00000502281 [[154178530, 154178918], [154191489, 154191681]] None
ENST00000482578 [[154178554, 154178759], [154191486, 154191671], [154197044, 154197420]] None
ENST00000433687 [[154178561, 154178759], [154197044, 154197282], [154214133, 154214285], [154215456, 154215522]] [[154197168, 154197282], [154214133, 154214285], [154215456, 154215522]]
ENST00000460908 [[154243801, 154243968], [154245229, 154245642]] None
NM_001130067 [[154074269, 154074422], [154191489, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154260474]] [[154191537, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154256118]]
NM_001302693 [[154125565, 154125712], [154191489, 154191671], [154197044, 154197427]] [[154125682, 154125712], [154191489, 154191671], [154197044, 154197321]]
NM_001302692 [[154125565, 154125712], [154191486, 154191671], [154197044, 154197427]] [[154125682, 154125712], [154191486, 154191671], [154197044, 154197321]]
NM_015271 [[154125565, 154125712], [154191486, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154260474]] [[154125682, 154125712], [154191486, 154191671], [154197044, 154197282], [154214133, 154214285], [154215456, 154215637], [154216464, 154217188], [154236636, 154236740], [154236983, 154237151], [154243799, 154243968], [154245229, 154245300], [154249681, 154249822], [154255965, 154256118]]
NM_001302694 [[154178510, 154178759], [154191486, 154191671], [154197044, 154197427]] [[154178756, 154178759], [154191486, 154191671], [154197044, 154197321]]
Promoter
Chrom Start End Description
chr4 154073469 154073523 CAGE_peak_3_at_TRIM2_5end
chr4 154074217 154074244 CAGE_peak_5_at_TRIM2_5end
chr4 154125545 154125552 CAGE_peak_8_at_TRIM2_5end
chr4 154125565 154125626 CAGE_peak_1_at_TRIM2_5end
chr4 154125648 154125659 CAGE_peak_4_at_TRIM2_5end
chr4 154178520 154178553 CAGE_peak_2_at_TRIM2_5end
chr4 154260113 154260124 CAGE_peak_7_at_TRIM2_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr4 GH04I152953 152953898 152959507 1.4 [{'connected_gene': 'FHDC1', 'score': 22.39}, {'connected_gene': 'RNF175', 'score': 8.92}, {'connected_gene': 'ARFIP1', 'score': 7.71}, {'connected_gene': 'TRIM2', 'score': 1.38}, {'connected_gene': 'PIR52121', 'score': 0.44}, {'connected_gene': 'GC04P152944', 'score': 0.39}, {'connected_gene': 'GC04P152946', 'score': 0.39}, {'connected_gene': 'GC04P152943', 'score': 0.39}, {'connected_gene': 'GC04P152945', 'score': 0.39}]
chr4 GH04I153079 153079957 153080306 0.66 [{'connected_gene': 'FHDC1', 'score': 19.16}, {'connected_gene': 'TMEM131L', 'score': 2.63}, {'connected_gene': 'GC04P153071', 'score': 0.44}, {'connected_gene': 'GC04P153070', 'score': 0.44}, {'connected_gene': 'ENSG00000249022', 'score': 0.25}, {'connected_gene': 'TRIM2', 'score': 0.19}]
chr4 GH04I153142 153142549 153145341 1.32 [{'connected_gene': 'MND1', 'score': 10.7}, {'connected_gene': 'FHDC1', 'score': 10.27}, {'connected_gene': 'RNF175', 'score': 9.56}, {'connected_gene': 'TRIM2', 'score': 9.16}, {'connected_gene': 'GC04P153071', 'score': 0.19}, {'connected_gene': 'GC04P153070', 'score': 0.19}]
chr4 GH04I153605 153605825 153620795 0.64 [{'connected_gene': 'MND1', 'score': 10.89}, {'connected_gene': 'TRIM2', 'score': 10.65}, {'connected_gene': 'RNF175', 'score': 10.64}, {'connected_gene': 'PIR43440', 'score': 0.34}, {'connected_gene': 'LOC105377498', 'score': 0.19}, {'connected_gene': 'TMEM131L', 'score': 0.11}]
chr4 GH04I153483 153483131 153484348 0.92 [{'connected_gene': 'MND1', 'score': 10.96}, {'connected_gene': 'TRIM2', 'score': 5.89}, {'connected_gene': 'TMEM131L', 'score': 0.37}, {'connected_gene': 'PIR44013', 'score': 0.34}]
chr4 GH04I153244 153244453 153246062 0.51 [{'connected_gene': 'MND1', 'score': 10.62}, {'connected_gene': 'TRIM2', 'score': 10.34}, {'connected_gene': 'LOC105377496', 'score': 0.77}, {'connected_gene': 'GC04M153170', 'score': 0.23}]
chr4 GH04I153159 153159511 153160600 0.96 [{'connected_gene': 'MND1', 'score': 10.14}, {'connected_gene': 'GC04M153152', 'score': 0.44}, {'connected_gene': 'TRIM2', 'score': 0.44}, {'connected_gene': 'GC04M153170', 'score': 0.29}]
chr4 GH04I153578 153578939 153588584 0.63 [{'connected_gene': 'MND1', 'score': 12.05}, {'connected_gene': 'TMEM131L', 'score': 11.47}, {'connected_gene': 'TRIM2', 'score': 10.65}, {'connected_gene': 'RNF175', 'score': 9.47}, {'connected_gene': 'LOC105377498', 'score': 0.26}, {'connected_gene': 'PIR43440', 'score': 0.23}]
chr4 GH04I152934 152934766 152938834 1.86 [{'connected_gene': 'LOC729870', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 29.39}, {'connected_gene': 'MIR4453HG', 'score': 10.48}, {'connected_gene': 'TRIM2', 'score': 3.07}, {'connected_gene': 'FHDC1', 'score': 3.0}, {'connected_gene': 'FAM192BP', 'score': 0.44}]
chr4 GH04I153314 153314493 153314900 0.22 [{'connected_gene': 'TRIM2', 'score': 15.54}, {'connected_gene': 'MND1', 'score': 11.57}, {'connected_gene': 'ENSG00000201786', 'score': 11.48}, {'connected_gene': 'RNU6-1196P', 'score': 11.48}, {'connected_gene': 'RNF175', 'score': 1.74}, {'connected_gene': 'ANXA2P1', 'score': 0.44}]
chr4 GH04I153246 153246162 153247528 0.49 [{'connected_gene': 'TRIM2', 'score': 10.88}, {'connected_gene': 'MND1', 'score': 10.62}, {'connected_gene': 'LOC105377496', 'score': 0.77}, {'connected_gene': 'GC04M153170', 'score': 0.23}]
chr4 GH04I153273 153273509 153277353 0.74 [{'connected_gene': 'TRIM2', 'score': 10.63}, {'connected_gene': 'MND1', 'score': 10.2}, {'connected_gene': 'GC04M153267', 'score': 0.44}, {'connected_gene': 'ENSG00000201786', 'score': 0.44}, {'connected_gene': 'GC04M153282', 'score': 0.34}]
chr4 GH04I153151 153151657 153154756 2.07 [{'connected_gene': 'TRIM2', 'score': 555.71}, {'connected_gene': 'GC04M153152', 'score': 550.77}, {'connected_gene': 'MIR4453HG', 'score': 17.94}, {'connected_gene': 'ARFIP1', 'score': 11.2}, {'connected_gene': 'MND1', 'score': 10.43}, {'connected_gene': 'ENSG00000201786', 'score': 10.37}, {'connected_gene': 'RNU6-1196P', 'score': 10.37}]
chr4 GH04I153114 153114240 153117898 1.12 [{'connected_gene': 'TRIM2', 'score': 18.58}, {'connected_gene': 'MIR4453HG', 'score': 15.39}, {'connected_gene': 'TMEM131L', 'score': 4.97}, {'connected_gene': 'TIGD4', 'score': 2.83}, {'connected_gene': 'GC04P153071', 'score': 0.25}, {'connected_gene': 'GC04P153070', 'score': 0.25}]
chr4 GH04I153327 153327041 153327440 0.4 [{'connected_gene': 'TRIM2', 'score': 17.16}, {'connected_gene': 'RNF175', 'score': 11.1}, {'connected_gene': 'TMEM131L', 'score': 10.38}, {'connected_gene': 'MND1', 'score': 0.37}, {'connected_gene': 'ANXA2P1', 'score': 0.37}]
chr4 GH04I153218 153218196 153224623 2.18 [{'connected_gene': 'TRIM2', 'score': 578.88}, {'connected_gene': 'ARFIP1', 'score': 40.92}, {'connected_gene': 'MIR4453HG', 'score': 23.31}, {'connected_gene': 'RNU6-1196P', 'score': 11.28}, {'connected_gene': 'ENSG00000201786', 'score': 11.27}, {'connected_gene': 'TIGD4', 'score': 10.87}, {'connected_gene': 'MND1', 'score': 10.7}, {'connected_gene': 'RNF175', 'score': 9.24}, {'connected_gene': 'LOC105377496', 'score': 0.31}, {'connected_gene': 'GC04M153170', 'score': 0.31}]
chr4 GH04I153210 153210172 153213589 0.57 [{'connected_gene': 'TRIM2', 'score': 31.25}, {'connected_gene': 'RNU6-1196P', 'score': 11.28}, {'connected_gene': 'ENSG00000201786', 'score': 11.27}, {'connected_gene': 'FHDC1', 'score': 9.69}, {'connected_gene': 'GC04M153170', 'score': 0.37}, {'connected_gene': 'LOC105377496', 'score': 0.28}]
chr4 GH04I153216 153216065 153217852 0.31 [{'connected_gene': 'TRIM2', 'score': 33.39}, {'connected_gene': 'RNU6-1196P', 'score': 11.22}, {'connected_gene': 'ENSG00000201786', 'score': 11.2}, {'connected_gene': 'FHDC1', 'score': 9.5}, {'connected_gene': 'GC04M153170', 'score': 0.34}, {'connected_gene': 'LOC105377496', 'score': 0.29}]
chr4 GH04I153202 153202767 153210045 2.35 [{'connected_gene': 'TRIM2', 'score': 568.99}, {'connected_gene': 'RNU6-1196P', 'score': 11.27}, {'connected_gene': 'ENSG00000201786', 'score': 11.25}, {'connected_gene': 'GC04M153170', 'score': 0.39}, {'connected_gene': 'LOC105377496', 'score': 0.26}]
chr4 GH04I153232 153232769 153235198 1.46 [{'connected_gene': 'TRIM2', 'score': 24.24}, {'connected_gene': 'ENSG00000201786', 'score': 11.82}, {'connected_gene': 'RNU6-1196P', 'score': 11.82}, {'connected_gene': 'LOC105377496', 'score': 0.37}, {'connected_gene': 'GC04M153170', 'score': 0.28}]
chr4 GH04I153226 153226208 153232262 0.46 [{'connected_gene': 'TRIM2', 'score': 11.37}, {'connected_gene': 'ENSG00000201786', 'score': 11.2}, {'connected_gene': 'RNU6-1196P', 'score': 11.2}, {'connected_gene': 'LOC105377496', 'score': 0.37}, {'connected_gene': 'GC04M153170', 'score': 0.28}]
chr4 GH04I153237 153237507 153239206 0.38 [{'connected_gene': 'TRIM2', 'score': 15.45}, {'connected_gene': 'ENSG00000201786', 'score': 11.83}, {'connected_gene': 'RNU6-1196P', 'score': 11.83}, {'connected_gene': 'LOC105377496', 'score': 0.39}, {'connected_gene': 'GC04M153170', 'score': 0.26}]
chr4 GH04I153259 153259881 153261769 0.94 [{'connected_gene': 'TRIM2', 'score': 21.11}, {'connected_gene': 'RNU6-1196P', 'score': 0.77}, {'connected_gene': 'GC04M153247', 'score': 0.44}]
chr4 GH04I153256 153256706 153259118 1.69 [{'connected_gene': 'TRIM2', 'score': 567.19}, {'connected_gene': 'GC04M153247', 'score': 0.44}, {'connected_gene': 'RNU6-1196P', 'score': 0.44}]
chr4 GH04I153253 153253897 153256135 0.31 [{'connected_gene': 'TRIM2', 'score': 32.03}, {'connected_gene': 'GC04M153247', 'score': 0.77}, {'connected_gene': 'RNU6-1196P', 'score': 0.39}]
chr4 GH04I153134 153134289 153134438 0.46 [{'connected_gene': 'TRIM2', 'score': 0.37}, {'connected_gene': 'GC04P153071', 'score': 0.21}, {'connected_gene': 'GC04P153070', 'score': 0.21}]
chr4 GH04I153127 153127601 153128285 1.07 [{'connected_gene': 'TRIM2', 'score': 4.66}, {'connected_gene': 'GC04P153071', 'score': 0.22}, {'connected_gene': 'GC04P153070', 'score': 0.22}]
chr4 GH04I153281 153281253 153282581 0.46 [{'connected_gene': 'TRIM2', 'score': 10.73}, {'connected_gene': 'GC04M153267', 'score': 0.39}, {'connected_gene': 'ENSG00000201786', 'score': 0.39}, {'connected_gene': 'GC04M153282', 'score': 0.37}]
chr4 GH04I153130 153130051 153133230 0.46 [{'connected_gene': 'TRIM2', 'score': 7.83}, {'connected_gene': 'GC04P153071', 'score': 0.21}, {'connected_gene': 'GC04P153070', 'score': 0.21}]
chr4 GH04I153111 153111589 153112553 0.38 [{'connected_gene': 'TRIM2', 'score': 11.98}, {'connected_gene': 'GC04P153071', 'score': 0.26}, {'connected_gene': 'GC04P153070', 'score': 0.26}]
chr4 GH04I153163 153163475 153173767 0.57 [{'connected_gene': 'TRIM2', 'score': 10.35}, {'connected_gene': 'GC04M153152', 'score': 0.39}, {'connected_gene': 'GC04M153170', 'score': 0.31}]
chr4 GH04I153173 153173895 153175134 0.54 [{'connected_gene': 'TRIM2', 'score': 6.59}, {'connected_gene': 'GC04M153152', 'score': 0.37}, {'connected_gene': 'GC04M153170', 'score': 0.37}]
chr4 GH04I153138 153138889 153139038 0.76 [{'connected_gene': 'TRIM2', 'score': 0.39}, {'connected_gene': 'GC04P153071', 'score': 0.2}, {'connected_gene': 'GC04P153070', 'score': 0.2}]
chr4 GH04I153113 153113009 153114180 0.2 [{'connected_gene': 'TRIM2', 'score': 11.01}, {'connected_gene': 'GC04P153071', 'score': 0.26}, {'connected_gene': 'GC04P153070', 'score': 0.26}]
chr4 GH04I153135 153134509 153135844 1.02 [{'connected_gene': 'TRIM2', 'score': 0.37}, {'connected_gene': 'GC04P153071', 'score': 0.21}, {'connected_gene': 'GC04P153070', 'score': 0.21}]
chr4 GH04I153348 153348343 153348376 0.7 [{'connected_gene': 'TMEM131L', 'score': 11.28}, {'connected_gene': 'MND1', 'score': 2.03}, {'connected_gene': 'TRIM2', 'score': 1.37}, {'connected_gene': 'RN7SL419P', 'score': 0.29}]
chr4 GH04I153190 153190832 153192349 0.49 [{'connected_gene': 'RNU6-1196P', 'score': 10.51}, {'connected_gene': 'ENSG00000201786', 'score': 10.5}, {'connected_gene': 'MND1', 'score': 10.22}, {'connected_gene': 'RNF175', 'score': 9.15}, {'connected_gene': 'TRIM2', 'score': 6.67}, {'connected_gene': 'GC04M153170', 'score': 0.77}, {'connected_gene': 'GC04M153152', 'score': 0.28}]
chr4 GH04I153263 153263326 153265192 0.31 [{'connected_gene': 'RNU6-1196P', 'score': 550.77}, {'connected_gene': 'TRIM2', 'score': 21.4}, {'connected_gene': 'GC04M153247', 'score': 0.39}]
chr4 GH04I153155 153155275 153158396 0.72 [{'connected_gene': 'GC04M153152', 'score': 550.77}, {'connected_gene': 'MND1', 'score': 10.43}, {'connected_gene': 'RNU6-1196P', 'score': 10.38}, {'connected_gene': 'ENSG00000201786', 'score': 10.37}, {'connected_gene': 'TRIM2', 'score': 10.18}, {'connected_gene': 'GC04M153170', 'score': 0.28}]
chr4 GH04I153266 153266653 153269589 0.79 [{'connected_gene': 'GC04M153267', 'score': 550.77}, {'connected_gene': 'ENSG00000201786', 'score': 550.77}, {'connected_gene': 'TRIM2', 'score': 21.3}, {'connected_gene': 'MIR4453HG', 'score': 10.54}, {'connected_gene': 'MND1', 'score': 10.13}, {'connected_gene': 'GC04M153282', 'score': 0.31}]
chr4 GH04I153295 153295015 153297857 0.72 [{'connected_gene': 'GC04M153282', 'score': 550.77}, {'connected_gene': 'TRIM2', 'score': 16.28}, {'connected_gene': 'GC04M153267', 'score': 0.31}, {'connected_gene': 'ENSG00000201786', 'score': 0.31}]
chr4 GH04I153292 153292574 153294124 0.2 [{'connected_gene': 'GC04M153282', 'score': 0.77}, {'connected_gene': 'GC04M153267', 'score': 0.31}, {'connected_gene': 'ENSG00000201786', 'score': 0.31}, {'connected_gene': 'TRIM2', 'score': 0.11}]
chr4 GH04I153082 153082401 153082800 0.4 [{'connected_gene': 'GC04P153071', 'score': 0.39}, {'connected_gene': 'GC04P153070', 'score': 0.39}, {'connected_gene': 'ENSG00000249022', 'score': 0.25}, {'connected_gene': 'TRIM2', 'score': 0.2}]
chr4 GH04I153083 153083200 153084019 1.09 [{'connected_gene': 'GC04P153071', 'score': 0.39}, {'connected_gene': 'GC04P153070', 'score': 0.39}, {'connected_gene': 'ENSG00000249022', 'score': 0.25}, {'connected_gene': 'TRIM2', 'score': 0.2}]
chr4 GH04I153084 153084789 153085710 1.03 [{'connected_gene': 'GC04P153071', 'score': 0.39}, {'connected_gene': 'GC04P153070', 'score': 0.39}, {'connected_gene': 'ENSG00000249022', 'score': 0.23}, {'connected_gene': 'TRIM2', 'score': 0.2}]
chr4 GH04I153093 153093774 153095342 0.2 [{'connected_gene': 'GC04P153071', 'score': 0.34}, {'connected_gene': 'GC04P153070', 'score': 0.34}, {'connected_gene': 'TRIM2', 'score': 0.22}]
chr4 GH04I153175 153175349 153175498 0.82 [{'connected_gene': 'GC04M153170', 'score': 0.37}, {'connected_gene': 'GC04M153152', 'score': 0.34}, {'connected_gene': 'TRIM2', 'score': 0.34}]
chr4 GH04I153294 153294709 153294918 0.31 [{'connected_gene': 'GC04M153282', 'score': 0.77}, {'connected_gene': 'GC04M153267', 'score': 0.31}, {'connected_gene': 'ENSG00000201786', 'score': 0.31}, {'connected_gene': 'TRIM2', 'score': 0.11}]
chr4 GH04I153188 153188786 153190315 0.89 [{'connected_gene': 'ENSG00000201786', 'score': 10.5}, {'connected_gene': 'RNU6-1196P', 'score': 10.5}, {'connected_gene': 'MND1', 'score': 10.02}, {'connected_gene': 'GC04M153170', 'score': 0.77}, {'connected_gene': 'GC04M153152', 'score': 0.29}, {'connected_gene': 'TRIM2', 'score': 0.28}]
chr4 GH04I153240 153240991 153244216 1.16 [{'connected_gene': 'ENSG00000201786', 'score': 11.85}, {'connected_gene': 'RNU6-1196P', 'score': 11.85}, {'connected_gene': 'MIR4453HG', 'score': 10.54}, {'connected_gene': 'MND1', 'score': 10.33}, {'connected_gene': 'TRIM2', 'score': 8.84}, {'connected_gene': 'LOC105377496', 'score': 0.44}, {'connected_gene': 'GC04M153170', 'score': 0.25}]
chr4 GH04I153247 153247916 153250929 1.51 [{'connected_gene': 'GC04M153247', 'score': 550.77}, {'connected_gene': 'LOC105377496', 'score': 550.77}, {'connected_gene': 'TRIM2', 'score': 31.51}, {'connected_gene': 'MND1', 'score': 9.91}, {'connected_gene': 'TMEM131L', 'score': 5.21}, {'connected_gene': 'TIGD4', 'score': 1.75}]

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