PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371019	[[99092254, 99094458]]	[[99093627, 99094329]]
NM_012083	[[99092253, 99094458]]	[[99093627, 99094329]]

Promoter

Chrom	Start	End	Description
chr10	99094236	99094266	CAGE_peak_2_at_FRAT2_5end
chr10	99094458	99094500	CAGE_peak_1_at_FRAT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I097336	97336150	97338666	0.96	[{'connected_gene': 'SLIT1', 'score': 15.66}, {'connected_gene': 'R3HCC1L', 'score': 14.76}, {'connected_gene': 'NPM1P26', 'score': 14.69}, {'connected_gene': 'EXOSC1', 'score': 13.31}, {'connected_gene': 'RPL13AP5', 'score': 11.1}, {'connected_gene': 'LOXL4', 'score': 10.94}, {'connected_gene': 'MARVELD1', 'score': 10.65}, {'connected_gene': 'LCOR', 'score': 10.33}, {'connected_gene': 'TM9SF3', 'score': 10.2}, {'connected_gene': 'PGAM1', 'score': 7.63}, {'connected_gene': 'LOC105378448', 'score': 0.77}, {'connected_gene': 'FRAT2', 'score': 0.77}, {'connected_gene': 'RPL34P20', 'score': 0.22}]
chr10	GH10I097405	97405602	97409373	1.68	[{'connected_gene': 'FRAT2', 'score': 38.71}, {'connected_gene': 'RRP12', 'score': 38.21}, {'connected_gene': 'FRAT1', 'score': 22.34}, {'connected_gene': 'ARHGAP19', 'score': 21.03}, {'connected_gene': 'ZDHHC16', 'score': 12.56}, {'connected_gene': 'EXOSC1', 'score': 12.56}, {'connected_gene': 'MMS19', 'score': 10.45}, {'connected_gene': 'UBTD1', 'score': 10.45}, {'connected_gene': 'ENSG00000249967', 'score': 10.11}, {'connected_gene': 'HOGA1', 'score': 10.11}, {'connected_gene': 'C10orf62', 'score': 10.1}, {'connected_gene': 'PI4K2A', 'score': 10.09}, {'connected_gene': 'ZFYVE27', 'score': 3.63}, {'connected_gene': 'LCOR', 'score': 1.67}, {'connected_gene': 'ENSG00000231970', 'score': 0.44}, {'connected_gene': 'ENSG00000200737', 'score': 0.39}, {'connected_gene': 'GC10M097424', 'score': 0.39}, {'connected_gene': 'LOC644215', 'score': 0.37}]
chr10	GH10I097349	97349775	97350897	0.63	[{'connected_gene': 'RRP12', 'score': 23.21}, {'connected_gene': 'ARHGAP19', 'score': 11.29}, {'connected_gene': 'SLIT1', 'score': 10.08}, {'connected_gene': 'FRAT2', 'score': 0.37}, {'connected_gene': 'RPL34P20', 'score': 0.26}]
chr10	GH10I097355	97355202	97357334	0.97	[{'connected_gene': 'RRP12', 'score': 34.14}, {'connected_gene': 'ARHGAP19', 'score': 24.29}, {'connected_gene': 'SLIT1', 'score': 9.92}, {'connected_gene': 'SLIT1-AS1', 'score': 9.89}, {'connected_gene': 'ENSG00000249967', 'score': 9.63}, {'connected_gene': 'HOGA1', 'score': 9.63}, {'connected_gene': 'C10orf62', 'score': 9.63}, {'connected_gene': 'PI4K2A', 'score': 9.62}, {'connected_gene': 'PGAM1', 'score': 7.32}, {'connected_gene': 'FRAT2', 'score': 0.34}, {'connected_gene': 'RPL34P20', 'score': 0.28}]
chr10	GH10I097353	97353402	97354999	0.8	[{'connected_gene': 'RRP12', 'score': 32.82}, {'connected_gene': 'ARHGAP19', 'score': 24.28}, {'connected_gene': 'PI4K2A', 'score': 11.64}, {'connected_gene': 'SLIT1', 'score': 10.08}, {'connected_gene': 'SLIT1-AS1', 'score': 10.05}, {'connected_gene': 'ENSG00000249967', 'score': 9.76}, {'connected_gene': 'HOGA1', 'score': 9.76}, {'connected_gene': 'C10orf62', 'score': 9.75}, {'connected_gene': 'FRAT1', 'score': 8.16}, {'connected_gene': 'FRAT2', 'score': 7.97}, {'connected_gene': 'ZFYVE27', 'score': 4.51}, {'connected_gene': 'LCOR', 'score': 2.75}, {'connected_gene': 'RPL34P20', 'score': 0.28}]
chr10	GH10I097389	97389652	97391435	0.31	[{'connected_gene': 'RRP12', 'score': 43.02}, {'connected_gene': 'ARHGAP19', 'score': 22.73}, {'connected_gene': 'PGAM1', 'score': 19.16}, {'connected_gene': 'ENSG00000200737', 'score': 11.94}, {'connected_gene': 'MMS19', 'score': 10.43}, {'connected_gene': 'UBTD1', 'score': 10.43}, {'connected_gene': 'ENSG00000249967', 'score': 10.32}, {'connected_gene': 'HOGA1', 'score': 10.32}, {'connected_gene': 'C10orf62', 'score': 10.31}, {'connected_gene': 'PI4K2A', 'score': 10.3}, {'connected_gene': 'RPL34P20', 'score': 0.77}, {'connected_gene': 'FRAT2', 'score': 0.22}]
chr10	GH10I097368	97368470	97370335	0.2	[{'connected_gene': 'RRP12', 'score': 34.25}, {'connected_gene': 'ARHGAP19', 'score': 18.92}, {'connected_gene': 'ENSG00000200737', 'score': 11.96}, {'connected_gene': 'PGAM1', 'score': 11.95}, {'connected_gene': 'MMS19', 'score': 9.95}, {'connected_gene': 'UBTD1', 'score': 9.95}, {'connected_gene': 'RPL34P20', 'score': 0.34}, {'connected_gene': 'FRAT2', 'score': 0.29}]
chr10	GH10I097379	97379573	97382097	0.38	[{'connected_gene': 'RRP12', 'score': 37.67}, {'connected_gene': 'ARHGAP19', 'score': 23.45}, {'connected_gene': 'ENSG00000200737', 'score': 12.11}, {'connected_gene': 'PGAM1', 'score': 12.1}, {'connected_gene': 'RPL34P20', 'score': 0.39}, {'connected_gene': 'FRAT2', 'score': 0.25}]
chr10	GH10I097364	97364988	97367545	0.78	[{'connected_gene': 'RRP12', 'score': 34.14}, {'connected_gene': 'ARHGAP19', 'score': 13.67}, {'connected_gene': 'PGAM1', 'score': 7.42}, {'connected_gene': 'RPL34P20', 'score': 0.31}, {'connected_gene': 'FRAT2', 'score': 0.29}]
chr10	GH10I097412	97412498	97415636	1.54	[{'connected_gene': 'RRP12', 'score': 22.23}, {'connected_gene': 'EXOSC1', 'score': 12.54}, {'connected_gene': 'ZDHHC16', 'score': 12.54}, {'connected_gene': 'MMS19', 'score': 10.39}, {'connected_gene': 'UBTD1', 'score': 10.39}, {'connected_gene': 'PGAM1', 'score': 8.6}, {'connected_gene': 'LCOR', 'score': 7.57}, {'connected_gene': 'ZFYVE27', 'score': 6.77}, {'connected_gene': 'ARHGAP19', 'score': 5.94}, {'connected_gene': 'FRAT1', 'score': 1.62}, {'connected_gene': 'FRAT2', 'score': 1.46}, {'connected_gene': 'PI4K2A', 'score': 1.39}, {'connected_gene': 'GC10M097424', 'score': 0.44}, {'connected_gene': 'ENSG00000200737', 'score': 0.44}, {'connected_gene': 'ENSG00000231970', 'score': 0.39}, {'connected_gene': 'LOC644215', 'score': 0.39}]
chr10	GH10I097387	97387918	97389212	0.31	[{'connected_gene': 'RRP12', 'score': 37.87}, {'connected_gene': 'ENSG00000200737', 'score': 11.94}, {'connected_gene': 'PGAM1', 'score': 11.92}, {'connected_gene': 'ARHGAP19', 'score': 10.69}, {'connected_gene': 'MMS19', 'score': 10.42}, {'connected_gene': 'UBTD1', 'score': 10.42}, {'connected_gene': 'ENSG00000249967', 'score': 10.31}, {'connected_gene': 'HOGA1', 'score': 10.31}, {'connected_gene': 'C10orf62', 'score': 10.31}, {'connected_gene': 'PI4K2A', 'score': 10.3}, {'connected_gene': 'RPL34P20', 'score': 0.77}, {'connected_gene': 'FRAT2', 'score': 0.23}]
chr10	GH10I097331	97331217	97336082	2.27	[{'connected_gene': 'LOC105378448', 'score': 550.77}, {'connected_gene': 'FRAT2', 'score': 550.77}, {'connected_gene': 'EXOSC1', 'score': 28.46}, {'connected_gene': 'RPL13AP5', 'score': 23.93}, {'connected_gene': 'NPM1P26', 'score': 23.33}, {'connected_gene': 'R3HCC1L', 'score': 20.94}, {'connected_gene': 'LOXL4', 'score': 20.23}, {'connected_gene': 'ENSG00000230928', 'score': 19.77}, {'connected_gene': 'TM9SF3', 'score': 19.33}, {'connected_gene': 'SLIT1', 'score': 16.59}, {'connected_gene': 'MARVELD1', 'score': 14.97}, {'connected_gene': 'ARHGAP19', 'score': 13.55}, {'connected_gene': 'LCOR', 'score': 10.67}, {'connected_gene': 'ZFYVE27', 'score': 9.75}, {'connected_gene': 'FRAT1', 'score': 0.39}]
chr10	GH10I097372	97372601	97372800	0.58	[{'connected_gene': 'ENSG00000200737', 'score': 11.98}, {'connected_gene': 'PGAM1', 'score': 11.96}, {'connected_gene': 'ARHGAP19', 'score': 10.95}, {'connected_gene': 'MMS19', 'score': 9.79}, {'connected_gene': 'UBTD1', 'score': 9.79}, {'connected_gene': 'RPL34P20', 'score': 0.34}, {'connected_gene': 'FRAT2', 'score': 0.28}, {'connected_gene': 'RRP12', 'score': 0.23}]