PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000337702	[[40714576, 40716600], [40728446, 40728578], [40730363, 40730445], [40746899, 40747121], [40755925, 40756077]]	[[40716246, 40716600], [40728446, 40728578], [40730363, 40730445]]
ENST00000503936	[[40715237, 40716600], [40746899, 40747121], [40755925, 40756047]]	None
ENST00000504251	[[40716045, 40716600], [40728446, 40728578], [40746899, 40747121], [40755925, 40756062]]	None
ENST00000511730	[[40716246, 40716600], [40730363, 40730445], [40746899, 40747121], [40755925, 40756051]]	None
NM_012382	[[40711677, 40716600], [40728446, 40728578], [40730363, 40730445], [40746899, 40747121], [40755925, 40756072]]	[[40716246, 40716600], [40728446, 40728578], [40730363, 40730445]]

Promoter

Chrom	Start	End	Description
chr5	40755987	40756077	CAGE_peak_1_at_TTC33_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I040672	40672001	40673000	1.03	[{'connected_gene': 'CARD6', 'score': 19.27}, {'connected_gene': 'PRKAA1', 'score': 4.59}, {'connected_gene': 'PTGER4', 'score': 4.22}, {'connected_gene': 'LOC105374738', 'score': 0.44}, {'connected_gene': 'ENSG00000199552', 'score': 0.37}, {'connected_gene': 'TTC33', 'score': 0.18}]
chr5	GH05I040783	40783500	40785973	0.84	[{'connected_gene': 'CARD6', 'score': 18.23}, {'connected_gene': 'TTC33', 'score': 17.38}, {'connected_gene': 'SNORD72', 'score': 11.55}, {'connected_gene': 'RPL37', 'score': 11.54}, {'connected_gene': 'ENSG00000212567', 'score': 0.44}, {'connected_gene': 'GC05M040791', 'score': 0.44}, {'connected_gene': 'PRKAA1', 'score': 0.39}]
chr5	GH05I040699	40699644	40701187	0.31	[{'connected_gene': 'CARD6', 'score': 17.21}, {'connected_gene': 'TTC33', 'score': 6.1}, {'connected_gene': 'GC05M040716', 'score': 0.39}, {'connected_gene': 'PTGER4', 'score': 0.34}]
chr5	GH05I040646	40646359	40646508	0.2	[{'connected_gene': 'CARD6', 'score': 4.4}, {'connected_gene': 'GC05P040654', 'score': 0.44}, {'connected_gene': 'GC05P040610', 'score': 0.28}, {'connected_gene': 'TTC33', 'score': 0.14}]
chr5	GH05I040668	40668546	40670932	0.31	[{'connected_gene': 'CARD6', 'score': 6.08}, {'connected_gene': 'LOC105374738', 'score': 0.44}, {'connected_gene': 'ENSG00000199552', 'score': 0.39}, {'connected_gene': 'TTC33', 'score': 0.17}]
chr5	GH05I040832	40832135	40836822	2.35	[{'connected_gene': 'SNORD72', 'score': 550.77}, {'connected_gene': 'RPL37', 'score': 550.77}, {'connected_gene': 'GC05M040833', 'score': 550.77}, {'connected_gene': 'PRKAA1', 'score': 52.14}, {'connected_gene': 'CARD6', 'score': 18.56}, {'connected_gene': 'TTC33', 'score': 13.27}, {'connected_gene': 'PLCXD3', 'score': 4.82}]
chr5	GH05I040674	40674520	40690311	2.65	[{'connected_gene': 'PTGER4', 'score': 564.48}, {'connected_gene': 'CARD6', 'score': 7.07}, {'connected_gene': 'TTC33', 'score': 6.34}, {'connected_gene': 'PRKAA1', 'score': 1.22}, {'connected_gene': 'LOC105374738', 'score': 0.77}, {'connected_gene': 'GC05M040716', 'score': 0.29}]
chr5	GH05I040514	40514987	40515301	0.24	[{'connected_gene': 'PTGER4', 'score': 22.17}, {'connected_gene': 'CARD6', 'score': 1.3}, {'connected_gene': 'GC05P040507', 'score': 0.44}, {'connected_gene': 'LOC105374737', 'score': 0.18}, {'connected_gene': 'TTC33', 'score': 0.07}]
chr5	GH05I040569	40569451	40571237	1.14	[{'connected_gene': 'PTGER4', 'score': 10.56}, {'connected_gene': 'CARD6', 'score': 2.83}, {'connected_gene': 'LOC105374737', 'score': 0.31}, {'connected_gene': 'GC05P040507', 'score': 0.21}, {'connected_gene': 'TTC33', 'score': 0.09}]
chr5	GH05I040627	40627630	40628831	0.54	[{'connected_gene': 'PTGER4', 'score': 16.21}, {'connected_gene': 'CARD6', 'score': 6.9}, {'connected_gene': 'GC05P040610', 'score': 0.37}, {'connected_gene': 'LOC105374737', 'score': 0.31}, {'connected_gene': 'GC05P040654', 'score': 0.31}, {'connected_gene': 'TTC33', 'score': 0.13}]
chr5	GH05I040521	40521984	40522218	0.5	[{'connected_gene': 'PTGER4', 'score': 16.07}, {'connected_gene': 'CARD6', 'score': 2.36}, {'connected_gene': 'GC05P040507', 'score': 0.39}, {'connected_gene': 'LOC105374737', 'score': 0.18}, {'connected_gene': 'TTC33', 'score': 0.07}]
chr5	GH05I040615	40615202	40617303	1	[{'connected_gene': 'PTGER4', 'score': 13.13}, {'connected_gene': 'PRKAA1', 'score': 4.59}, {'connected_gene': 'GC05P040610', 'score': 0.44}, {'connected_gene': 'LOC105374737', 'score': 0.37}, {'connected_gene': 'GC05P040654', 'score': 0.28}, {'connected_gene': 'TTC33', 'score': 0.12}]
chr5	GH05I040623	40623487	40624237	0.2	[{'connected_gene': 'PTGER4', 'score': 11.5}, {'connected_gene': 'GC05P040610', 'score': 0.39}, {'connected_gene': 'LOC105374737', 'score': 0.34}, {'connected_gene': 'GC05P040654', 'score': 0.29}, {'connected_gene': 'TTC33', 'score': 0.12}]
chr5	GH05I040518	40518039	40519430	0.71	[{'connected_gene': 'PTGER4', 'score': 11.2}, {'connected_gene': 'GC05P040507', 'score': 0.39}, {'connected_gene': 'LOC105374737', 'score': 0.18}, {'connected_gene': 'TTC33', 'score': 0.07}]
chr5	GH05I040550	40550875	40553326	0.91	[{'connected_gene': 'PTGER4', 'score': 5.8}, {'connected_gene': 'GC05P040507', 'score': 0.26}, {'connected_gene': 'LOC105374737', 'score': 0.25}, {'connected_gene': 'TTC33', 'score': 0.08}]
chr5	GH05I040605	40605382	40606400	0.2	[{'connected_gene': 'PTGER4', 'score': 10.97}, {'connected_gene': 'GC05P040610', 'score': 0.77}, {'connected_gene': 'LOC105374737', 'score': 0.44}, {'connected_gene': 'TTC33', 'score': 0.1}]
chr5	GH05I040795	40795401	40800353	2.26	[{'connected_gene': 'PRKAA1', 'score': 550.77}, {'connected_gene': 'CARD6', 'score': 6.54}, {'connected_gene': 'TTC33', 'score': 6.2}, {'connected_gene': 'ENSG00000212567', 'score': 0.44}, {'connected_gene': 'GC05M040791', 'score': 0.44}]
chr5	GH05I040733	40733280	40736548	0.89	[{'connected_gene': 'TTC33', 'score': 17.52}, {'connected_gene': 'PTGER4', 'score': 10.86}, {'connected_gene': 'CARD6', 'score': 6.57}, {'connected_gene': 'GC05M040716', 'score': 0.34}]
chr5	GH05I040691	40691462	40692953	0.2	[{'connected_gene': 'TTC33', 'score': 5.82}, {'connected_gene': 'PTGER4', 'score': 0.39}, {'connected_gene': 'GC05M040716', 'score': 0.34}]
chr5	GH05I040754	40754026	40756588	2.37	[{'connected_gene': 'TTC33', 'score': 556.84}, {'connected_gene': 'PRKAA1', 'score': 24.6}, {'connected_gene': 'CARD6', 'score': 17.49}, {'connected_gene': 'PTGER4', 'score': 4.54}, {'connected_gene': 'GC05M040716', 'score': 0.26}]
chr5	GH05I040673	40673201	40673600	0.4	[{'connected_gene': 'LOC105374738', 'score': 0.44}, {'connected_gene': 'ENSG00000199552', 'score': 0.37}, {'connected_gene': 'TTC33', 'score': 0.18}]
chr5	GH05I040578	40578719	40578868	0.74	[{'connected_gene': 'LOC105374737', 'score': 0.34}, {'connected_gene': 'GC05P040507', 'score': 0.19}, {'connected_gene': 'TTC33', 'score': 0.1}]
chr5	GH05I040571	40571665	40573505	0.4	[{'connected_gene': 'LOC105374737', 'score': 0.31}, {'connected_gene': 'GC05P040507', 'score': 0.21}, {'connected_gene': 'TTC33', 'score': 0.09}]
chr5	GH05I040553	40553598	40555064	0.38	[{'connected_gene': 'LOC105374737', 'score': 0.25}, {'connected_gene': 'GC05P040507', 'score': 0.25}, {'connected_gene': 'TTC33', 'score': 0.08}]
chr5	GH05I040652	40652325	40655501	0.83	[{'connected_gene': 'ENSG00000199552', 'score': 550.77}, {'connected_gene': 'GC05P040654', 'score': 550.77}, {'connected_gene': 'PTGER4', 'score': 14.8}, {'connected_gene': 'CARD6', 'score': 7.1}, {'connected_gene': 'GC05P040610', 'score': 0.26}, {'connected_gene': 'TTC33', 'score': 0.15}]
chr5	GH05I040649	40649001	40650200	0.4	[{'connected_gene': 'GC05P040654', 'score': 0.44}, {'connected_gene': 'GC05P040610', 'score': 0.28}, {'connected_gene': 'TTC33', 'score': 0.14}]
chr5	GH05I040641	40641400	40641601	0.69	[{'connected_gene': 'GC05P040654', 'score': 0.39}, {'connected_gene': 'GC05P040610', 'score': 0.29}, {'connected_gene': 'TTC33', 'score': 0.14}]
chr5	GH05I040548	40548079	40548228	0.72	[{'connected_gene': 'GC05P040507', 'score': 0.26}, {'connected_gene': 'LOC105374737', 'score': 0.23}, {'connected_gene': 'TTC33', 'score': 0.08}]