Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000509864 [[54558528, 54558561], [54559157, 54559262], [54565808, 54565893], [54576287, 54576407], [54577439, 54577717]] [[54565860, 54565893], [54576287, 54576407], [54577439, 54577717]]
ENST00000508394 [[54575058, 54576407], [54577439, 54577743], [54582734, 54582778]] [[54575879, 54576407], [54577439, 54577724]]
ENST00000511854 [[54575236, 54575431], [54576287, 54576543]] None
ENST00000506595 [[54575236, 54575431], [54576287, 54576407], [54577439, 54577743], [54582298, 54582391]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
ENST00000514685 [[54575236, 54575431], [54576287, 54576407], [54577439, 54577743], [54581602, 54581689], [54582504, 54582724]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
ENST00000505128 [[54575240, 54577743], [54582298, 54582380], [54582734, 54582756]] [[54577343, 54577724]]
ENST00000337581 [[54575251, 54576407], [54577439, 54577743], [54581602, 54581689], [54582734, 54582758]] [[54575879, 54576407], [54577439, 54577724]]
ENST00000513838 [[54575254, 54575431], [54576287, 54576407], [54577439, 54577743], [54581602, 54581689], [54582294, 54582380], [54582509, 54582741]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
ENST00000243112 [[54575254, 54575431], [54576287, 54576407], [54577439, 54577743], [54582734, 54582760]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
ENST00000505662 [[54575268, 54576407], [54577548, 54577743], [54581602, 54581690]] None
ENST00000401977 [[54575737, 54576407], [54577439, 54577743], [54582298, 54582406]] [[54575879, 54576407], [54577439, 54577724]]
ENST00000514196 [[54575855, 54575954], [54576287, 54576407], [54577439, 54577743], [54582734, 54582764]] [[54575879, 54575954], [54576287, 54576407], [54577439, 54577724]]
ENST00000511522 [[54575881, 54576407], [54582734, 54582769]] None
ENST00000504338 [[54576175, 54576407], [54577439, 54577743], [54581602, 54581689], [54582298, 54582380], [54582609, 54582655]] [[54576175, 54576407], [54577439, 54577724]]
ENST00000509078 [[54576341, 54576407], [54577548, 54578080]] None
ENST00000507904 [[54576368, 54576407], [54577439, 54577743], [54582298, 54582380], [54582734, 54582774]] [[54576368, 54576407], [54577439, 54577724]]
ENST00000503447 [[54577200, 54577743], [54582734, 54582776]] None
ENST00000504797 [[54577437, 54577743], [54581602, 54581686], [54582650, 54582730]] [[54577437, 54577724]]
ENST00000506169 [[54577453, 54577743], [54580630, 54580795], [54582298, 54582380], [54582734, 54582769]] [[54577453, 54577724]]
ENST00000503306 [[54577478, 54577743], [54580630, 54580795], [54581602, 54581689], [54582734, 54582758]] [[54577478, 54577724]]
ENST00000505597 [[54580766, 54580795], [54581602, 54581624], [54582298, 54582741]] None
ENST00000503231 [[54580997, 54581079], [54581602, 54581689], [54582460, 54582741]] None
NM_014311 [[54574141, 54576407], [54577439, 54577743], [54581602, 54581689], [54582734, 54582778]] [[54575879, 54576407], [54577439, 54577724]]
NM_001243787 [[54574141, 54576407], [54577439, 54577743], [54581602, 54581686], [54582734, 54582778]] [[54575879, 54576407], [54577439, 54577724]]
NM_001243788 [[54574141, 54576407], [54577439, 54577743], [54582734, 54582778]] [[54575879, 54576407], [54577439, 54577724]]
NM_001243790 [[54575236, 54575431], [54576287, 54576407], [54577439, 54577743], [54581602, 54581689], [54582504, 54582741]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
NM_001243789 [[54575236, 54575431], [54576287, 54576407], [54577439, 54577743], [54581602, 54581689], [54582294, 54582380], [54582509, 54582741]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
NR_045039 [[54575236, 54575431], [54576287, 54576407], [54577439, 54577743], [54582298, 54582380], [54582734, 54582778]] None
NM_001243791 [[54575236, 54575431], [54576287, 54576407], [54577439, 54577743], [54582734, 54582778]] [[54575302, 54575431], [54576287, 54576407], [54577439, 54577724]]
Promoter
Chrom Start End Description
chr12 54582750 54582780 CAGE_peak_1_at_SMUG1_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr12 GH12I054067 54067783 54068235 0.38 [{'connected_gene': 'MIR615', 'score': 11.5}, {'connected_gene': 'HOXC5', 'score': 11.44}, {'connected_gene': 'HOXC4', 'score': 11.44}, {'connected_gene': 'HOXC6', 'score': 11.39}, {'connected_gene': 'SMUG1', 'score': 10.97}, {'connected_gene': 'HOXC11', 'score': 10.92}, {'connected_gene': 'HOTAIR', 'score': 10.92}, {'connected_gene': 'HOXC8', 'score': 10.9}, {'connected_gene': 'HOXC-AS1', 'score': 10.88}, {'connected_gene': 'HOXC9', 'score': 10.87}, {'connected_gene': 'HOXC-AS2', 'score': 10.87}, {'connected_gene': 'FLJ12825', 'score': 0.44}, {'connected_gene': 'GC12P054090', 'score': 0.39}]
chr12 GH12I054076 54076137 54076306 0.46 [{'connected_gene': 'MIR615', 'score': 11.56}, {'connected_gene': 'HOXC5', 'score': 11.52}, {'connected_gene': 'HOXC4', 'score': 11.52}, {'connected_gene': 'HOXC6', 'score': 11.46}, {'connected_gene': 'LOC102724030', 'score': 11.42}, {'connected_gene': 'SMUG1', 'score': 11.36}, {'connected_gene': 'MIR196A2', 'score': 10.95}, {'connected_gene': 'HOXC-AS3', 'score': 10.93}, {'connected_gene': 'HOXC10', 'score': 10.93}, {'connected_gene': 'HOTAIR', 'score': 10.79}, {'connected_gene': 'HOXC11', 'score': 10.79}, {'connected_gene': 'HOXC8', 'score': 10.56}, {'connected_gene': 'HOXC-AS2', 'score': 10.43}, {'connected_gene': 'HOXC-AS1', 'score': 10.43}, {'connected_gene': 'HOXC9', 'score': 10.43}, {'connected_gene': 'GC12P054090', 'score': 0.77}, {'connected_gene': 'FLJ12825', 'score': 0.37}]
chr12 GH12I054306 54306138 54308272 1.47 [{'connected_gene': 'NFE2', 'score': 21.82}, {'connected_gene': 'MIR148B', 'score': 12.58}, {'connected_gene': 'GPR84', 'score': 11.52}, {'connected_gene': 'SMUG1', 'score': 4.95}, {'connected_gene': 'NCKAP1L', 'score': 2.1}, {'connected_gene': 'ZNF385A', 'score': 1.81}, {'connected_gene': 'COPZ1', 'score': 0.44}, {'connected_gene': 'RNU6-950P', 'score': 0.39}, {'connected_gene': 'GC12M054318', 'score': 0.39}, {'connected_gene': 'ENSG00000258344', 'score': 0.29}]
chr12 GH12I054130 54130615 54138911 1.04 [{'connected_gene': 'FLJ12825', 'score': 40.0}, {'connected_gene': 'TARBP2', 'score': 21.03}, {'connected_gene': 'SMUG1', 'score': 11.77}, {'connected_gene': 'MIR615', 'score': 11.54}, {'connected_gene': 'HOXC5', 'score': 11.51}, {'connected_gene': 'HOXC4', 'score': 11.51}, {'connected_gene': 'HOXC6', 'score': 11.5}, {'connected_gene': 'ENSG00000260470', 'score': 11.15}, {'connected_gene': 'HOXC8', 'score': 11.02}, {'connected_gene': 'HOXC9', 'score': 10.97}, {'connected_gene': 'HOXC-AS2', 'score': 10.97}, {'connected_gene': 'HOXC-AS1', 'score': 10.97}, {'connected_gene': 'HOXC-AS3', 'score': 10.86}, {'connected_gene': 'HOXC10', 'score': 10.86}, {'connected_gene': 'MIR196A2', 'score': 10.86}, {'connected_gene': 'ZNF740', 'score': 10.45}, {'connected_gene': 'HOTAIR', 'score': 10.27}, {'connected_gene': 'HOXC11', 'score': 10.27}, {'connected_gene': 'ENSG00000257596', 'score': 9.85}, {'connected_gene': 'SMUG1-AS1', 'score': 0.44}, {'connected_gene': 'LINC02381', 'score': 0.44}, {'connected_gene': 'GC12M054122', 'score': 0.26}]
chr12 GH12I054173 54173001 54173689 1.05 [{'connected_gene': 'FLJ12825', 'score': 26.66}, {'connected_gene': 'ENSG00000257534', 'score': 0.44}, {'connected_gene': 'GC12M054122', 'score': 0.44}, {'connected_gene': 'SMUG1', 'score': 0.37}, {'connected_gene': 'GC12P054155', 'score': 0.37}]
chr12 GH12I054051 54051141 54055893 2.01 [{'connected_gene': 'HOXC4', 'score': 561.51}, {'connected_gene': 'AAAS', 'score': 31.14}, {'connected_gene': 'ATF7', 'score': 28.82}, {'connected_gene': 'RARG', 'score': 22.78}, {'connected_gene': 'HNRNPA1', 'score': 19.48}, {'connected_gene': 'ENSG00000260470', 'score': 18.41}, {'connected_gene': 'PCBP2', 'score': 14.92}, {'connected_gene': 'HOTAIR', 'score': 14.57}, {'connected_gene': 'SP1', 'score': 14.57}, {'connected_gene': 'IGFBP6', 'score': 13.28}, {'connected_gene': 'ENSG00000258344', 'score': 12.27}, {'connected_gene': 'HOXC5', 'score': 11.51}, {'connected_gene': 'HOXC6', 'score': 11.45}, {'connected_gene': 'PFDN5', 'score': 11.25}, {'connected_gene': 'MIR196A2', 'score': 11.23}, {'connected_gene': 'HOXC-AS3', 'score': 11.23}, {'connected_gene': 'HOXC10', 'score': 11.23}, {'connected_gene': 'HOXC8', 'score': 11.16}, {'connected_gene': 'HOXC-AS1', 'score': 11.01}, {'connected_gene': 'HOXC-AS2', 'score': 11.0}, {'connected_gene': 'HOXC9', 'score': 11.0}, {'connected_gene': 'LOC102724030', 'score': 10.94}, {'connected_gene': 'SMUG1', 'score': 10.9}, {'connected_gene': 'CBX5', 'score': 10.52}, {'connected_gene': 'LOC100652999', 'score': 10.43}, {'connected_gene': 'HOXC13', 'score': 10.42}, {'connected_gene': 'HOXC13-AS', 'score': 10.42}, {'connected_gene': 'HOXC11', 'score': 10.22}, {'connected_gene': 'ZNF740', 'score': 10.21}, {'connected_gene': 'FLJ12825', 'score': 7.19}, {'connected_gene': 'GC12P054078', 'score': 0.39}, {'connected_gene': 'PIR31123', 'score': 0.39}]
chr12 GH12I054009 54009200 54034991 3.17 [{'connected_gene': 'HOXC4', 'score': 558.95}, {'connected_gene': 'HOXC6', 'score': 555.05}, {'connected_gene': 'HOXC5', 'score': 552.94}, {'connected_gene': 'PIR59985', 'score': 550.77}, {'connected_gene': 'GC12P054093', 'score': 550.77}, {'connected_gene': 'PIR46464', 'score': 550.77}, {'connected_gene': 'PIR59725', 'score': 550.77}, {'connected_gene': 'PIR53546', 'score': 550.77}, {'connected_gene': 'GC12P054071', 'score': 550.77}, {'connected_gene': 'AAAS', 'score': 31.93}, {'connected_gene': 'ATF7', 'score': 29.85}, {'connected_gene': 'HNRNPA1', 'score': 26.25}, {'connected_gene': 'RARG', 'score': 22.78}, {'connected_gene': 'ENSG00000260470', 'score': 18.38}, {'connected_gene': 'ZNF740', 'score': 16.54}, {'connected_gene': 'HOXC8', 'score': 15.25}, {'connected_gene': 'SMUG1', 'score': 14.63}, {'connected_gene': 'PCBP2', 'score': 13.83}, {'connected_gene': 'IGFBP6', 'score': 13.28}, {'connected_gene': 'SP1', 'score': 13.16}, {'connected_gene': 'HOXC-AS1', 'score': 12.94}, {'connected_gene': 'CBX5', 'score': 12.87}, {'connected_gene': 'ENSG00000258344', 'score': 12.83}, {'connected_gene': 'ENSG00000270175', 'score': 12.05}, {'connected_gene': 'CSAD', 'score': 12.01}, {'connected_gene': 'COPZ1', 'score': 11.45}, {'connected_gene': 'PFDN5', 'score': 11.25}, {'connected_gene': 'MAP3K12', 'score': 10.91}, {'connected_gene': 'FLJ12825', 'score': 7.56}, {'connected_gene': 'HOXC9', 'score': 6.88}, {'connected_gene': 'LINC02381', 'score': 5.62}, {'connected_gene': 'ATP5MC2', 'score': 2.82}, {'connected_gene': 'HOXC10', 'score': 2.25}, {'connected_gene': 'PIR45911', 'score': 0.77}, {'connected_gene': 'PIR33391', 'score': 0.77}, {'connected_gene': 'PIR50530', 'score': 0.77}, {'connected_gene': 'PIR57300', 'score': 0.77}, {'connected_gene': 'GC12M054068', 'score': 0.77}, {'connected_gene': 'PIR46275', 'score': 0.77}, {'connected_gene': 'GC12M054069', 'score': 0.77}, {'connected_gene': 'ENSG00000260597', 'score': 0.77}, {'connected_gene': 'PIR60886', 'score': 0.77}, {'connected_gene': 'ENSG00000273046', 'score': 0.77}, {'connected_gene': 'PIR54946', 'score': 0.77}, {'connected_gene': 'PIR48298', 'score': 0.44}, {'connected_gene': 'PIR34386', 'score': 0.44}, {'connected_gene': 'GC12P054063', 'score': 0.44}, {'connected_gene': 'GC12M054067', 'score': 0.44}, {'connected_gene': 'GC12P054097', 'score': 0.44}, {'connected_gene': 'PIR34718', 'score': 0.44}, {'connected_gene': 'PIR54432', 'score': 0.44}, {'connected_gene': 'PIR33335', 'score': 0.44}, {'connected_gene': 'PIR59819', 'score': 0.44}, {'connected_gene': 'GC12P054054', 'score': 0.39}, {'connected_gene': 'GC12P054096', 'score': 0.39}, {'connected_gene': 'MIR615', 'score': 0.39}, {'connected_gene': 'GC12P054099', 'score': 0.37}, {'connected_gene': 'ENSG00000273049', 'score': 0.28}]
chr12 GH12I054160 54160549 54162428 0.94 [{'connected_gene': 'ZNF740', 'score': 45.18}, {'connected_gene': 'ATF7', 'score': 40.58}, {'connected_gene': 'HNRNPA1', 'score': 37.2}, {'connected_gene': 'PCBP2', 'score': 32.02}, {'connected_gene': 'ENSG00000258344', 'score': 30.07}, {'connected_gene': 'LOC100652999', 'score': 27.91}, {'connected_gene': 'MAP3K12', 'score': 24.84}, {'connected_gene': 'AAAS', 'score': 21.65}, {'connected_gene': 'TARBP2', 'score': 21.35}, {'connected_gene': 'CALCOCO1', 'score': 20.61}, {'connected_gene': 'RARG', 'score': 20.52}, {'connected_gene': 'CBX5', 'score': 19.57}, {'connected_gene': 'SP1', 'score': 14.57}, {'connected_gene': 'ENSG00000260470', 'score': 10.65}, {'connected_gene': 'ENSG00000257596', 'score': 9.87}, {'connected_gene': 'PFDN5', 'score': 9.7}, {'connected_gene': 'SMUG1', 'score': 8.12}, {'connected_gene': 'ENSG00000257534', 'score': 0.77}, {'connected_gene': 'GC12P054155', 'score': 0.44}, {'connected_gene': 'LOC102724030', 'score': 0.39}, {'connected_gene': 'GC12M054122', 'score': 0.37}]
chr12 GH12I054036 54036470 54040693 1.15 [{'connected_gene': 'SMUG1', 'score': 14.63}, {'connected_gene': 'AAAS', 'score': 12.61}, {'connected_gene': 'HOXC8', 'score': 12.08}, {'connected_gene': 'HOXC-AS1', 'score': 6.13}, {'connected_gene': 'MIR615', 'score': 0.77}, {'connected_gene': 'GC12P054078', 'score': 0.77}, {'connected_gene': 'PIR31123', 'score': 0.77}, {'connected_gene': 'HOXC4', 'score': 0.34}]
chr12 GH12I054166 54166341 54167596 0.83 [{'connected_gene': 'SMUG1', 'score': 8.18}, {'connected_gene': 'FLJ12825', 'score': 4.9}, {'connected_gene': 'ENSG00000257534', 'score': 0.77}, {'connected_gene': 'GC12P054155', 'score': 0.39}, {'connected_gene': 'GC12M054122', 'score': 0.39}, {'connected_gene': 'LOC102724030', 'score': 0.37}]
chr12 GH12I054188 54188000 54189626 1.97 [{'connected_gene': 'SMUG1', 'score': 550.77}, {'connected_gene': 'LOC105369777', 'score': 550.77}, {'connected_gene': 'FLJ12825', 'score': 28.48}, {'connected_gene': 'HOXC8', 'score': 12.06}, {'connected_gene': 'HOXC-AS1', 'score': 12.05}, {'connected_gene': 'HOXC9', 'score': 12.05}, {'connected_gene': 'HOXC-AS2', 'score': 12.05}, {'connected_gene': 'HOXC6', 'score': 12.05}, {'connected_gene': 'ENSG00000257605', 'score': 11.92}, {'connected_gene': 'MIR615', 'score': 11.65}, {'connected_gene': 'HOXC5', 'score': 11.64}, {'connected_gene': 'HOXC4', 'score': 11.64}, {'connected_gene': 'LOC102724030', 'score': 11.61}, {'connected_gene': 'MIR196A2', 'score': 11.29}, {'connected_gene': 'HOXC-AS3', 'score': 11.29}, {'connected_gene': 'HOXC10', 'score': 11.29}, {'connected_gene': 'HOXC11', 'score': 10.65}, {'connected_gene': 'HOTAIR', 'score': 10.65}, {'connected_gene': 'GC12M054122', 'score': 0.39}]
chr12 GH12I054187 54187157 54187306 0.52 [{'connected_gene': 'SMUG1', 'score': 550.77}, {'connected_gene': 'LOC105369777', 'score': 550.77}, {'connected_gene': 'FLJ12825', 'score': 28.23}, {'connected_gene': 'GC12M054122', 'score': 0.44}]
chr12 GH12I054256 54256778 54263698 2.02 [{'connected_gene': 'CBX5', 'score': 550.37}, {'connected_gene': 'GPR84', 'score': 11.35}, {'connected_gene': 'COPZ1', 'score': 11.28}, {'connected_gene': 'RNU6-950P', 'score': 11.24}, {'connected_gene': 'MIR148B', 'score': 10.69}, {'connected_gene': 'HNRNPA1', 'score': 5.24}, {'connected_gene': 'ENSG00000257534', 'score': 4.84}, {'connected_gene': 'FLJ12825', 'score': 4.4}, {'connected_gene': 'SMUG1', 'score': 4.25}, {'connected_gene': 'RN7SL390P', 'score': 0.77}, {'connected_gene': 'ENSG00000257596', 'score': 0.77}]
chr12 GH12I053386 53386001 53392339 1.27 [{'connected_gene': 'SP1', 'score': 28.22}, {'connected_gene': 'AAAS', 'score': 15.83}, {'connected_gene': 'SMUG1', 'score': 14.56}, {'connected_gene': 'PRR13', 'score': 14.06}, {'connected_gene': 'ATP5MC2', 'score': 6.29}, {'connected_gene': 'ESPL1', 'score': 5.02}, {'connected_gene': 'PIR43704', 'score': 0.44}, {'connected_gene': 'GC12M053411', 'score': 0.37}]
chr12 GH12I054140 54140452 54142890 0.86 [{'connected_gene': 'SMUG1-AS1', 'score': 550.77}, {'connected_gene': 'FLJ12825', 'score': 37.52}, {'connected_gene': 'SMUG1', 'score': 19.34}, {'connected_gene': 'HOXC5', 'score': 11.16}, {'connected_gene': 'MIR196A2', 'score': 11.15}, {'connected_gene': 'HOXC6', 'score': 11.14}, {'connected_gene': 'HOXC-AS3', 'score': 11.14}, {'connected_gene': 'HOXC10', 'score': 11.14}, {'connected_gene': 'MIR615', 'score': 11.06}, {'connected_gene': 'HOXC4', 'score': 11.04}, {'connected_gene': 'HOXC8', 'score': 10.8}, {'connected_gene': 'HOXC9', 'score': 10.79}, {'connected_gene': 'HOXC-AS2', 'score': 10.79}, {'connected_gene': 'HOXC-AS1', 'score': 10.79}, {'connected_gene': 'HOTAIR', 'score': 10.62}, {'connected_gene': 'HOXC11', 'score': 10.62}, {'connected_gene': 'ENSG00000260470', 'score': 10.39}, {'connected_gene': 'ITGA5', 'score': 4.83}, {'connected_gene': 'LINC02381', 'score': 0.37}, {'connected_gene': 'GC12M054122', 'score': 0.28}]
chr12 GH12I054079 54079004 54083573 1.44 [{'connected_gene': 'LOC100240734', 'score': 550.77}, {'connected_gene': 'LOC100240735', 'score': 550.77}, {'connected_gene': 'SMUG1', 'score': 17.78}, {'connected_gene': 'FLJ12825', 'score': 13.64}, {'connected_gene': 'CBX5', 'score': 10.88}, {'connected_gene': 'MIR615', 'score': 10.72}, {'connected_gene': 'HOXC5', 'score': 10.68}, {'connected_gene': 'HOXC4', 'score': 10.68}, {'connected_gene': 'HOXC6', 'score': 10.63}, {'connected_gene': 'HOXC8', 'score': 10.47}, {'connected_gene': 'HOXC-AS2', 'score': 10.45}, {'connected_gene': 'HOXC-AS1', 'score': 10.45}, {'connected_gene': 'HOXC9', 'score': 10.45}, {'connected_gene': 'HOTAIR', 'score': 10.37}, {'connected_gene': 'HOXC11', 'score': 10.37}, {'connected_gene': 'MAP3K12', 'score': 10.16}, {'connected_gene': 'MIR196A2', 'score': 10.07}, {'connected_gene': 'HOXC-AS3', 'score': 10.06}, {'connected_gene': 'HOXC10', 'score': 10.06}, {'connected_gene': 'GC12P054090', 'score': 0.77}]
chr12 GH12I054125 54125601 54128807 1.74 [{'connected_gene': 'ENSG00000250432', 'score': 550.77}, {'connected_gene': 'LINC02381', 'score': 550.77}, {'connected_gene': 'MAP3K12', 'score': 14.88}, {'connected_gene': 'CBX5', 'score': 11.22}, {'connected_gene': 'ENSG00000260470', 'score': 8.98}, {'connected_gene': 'FLJ12825', 'score': 5.03}, {'connected_gene': 'SMUG1-AS1', 'score': 0.37}, {'connected_gene': 'GC12M054122', 'score': 0.23}, {'connected_gene': 'SMUG1', 'score': 0.21}]
chr12 GH12I054146 54146548 54147212 0.73 [{'connected_gene': 'ENSG00000260470', 'score': 550.77}, {'connected_gene': 'HOXC6', 'score': 10.71}, {'connected_gene': 'MIR615', 'score': 10.38}, {'connected_gene': 'HOXC5', 'score': 10.36}, {'connected_gene': 'HOXC4', 'score': 10.36}, {'connected_gene': 'SMUG1-AS1', 'score': 0.77}, {'connected_gene': 'GC12M054122', 'score': 0.29}, {'connected_gene': 'SMUG1', 'score': 0.26}]
chr12 GH12I054077 54077305 54078341 0.43 [{'connected_gene': 'GC12P054090', 'score': 550.77}, {'connected_gene': 'SMUG1', 'score': 16.54}, {'connected_gene': 'MIR615', 'score': 11.56}, {'connected_gene': 'HOXC5', 'score': 11.51}, {'connected_gene': 'HOXC4', 'score': 11.51}, {'connected_gene': 'HOXC6', 'score': 11.46}, {'connected_gene': 'LOC102724030', 'score': 11.42}, {'connected_gene': 'MIR196A2', 'score': 10.94}, {'connected_gene': 'HOXC-AS3', 'score': 10.93}, {'connected_gene': 'HOXC10', 'score': 10.93}, {'connected_gene': 'HOTAIR', 'score': 10.79}, {'connected_gene': 'HOXC11', 'score': 10.79}, {'connected_gene': 'HOXC8', 'score': 10.56}, {'connected_gene': 'HOXC-AS1', 'score': 10.43}, {'connected_gene': 'HOXC9', 'score': 10.43}, {'connected_gene': 'HOXC-AS2', 'score': 10.43}, {'connected_gene': 'FLJ12825', 'score': 5.74}, {'connected_gene': 'LOC100240735', 'score': 0.77}]
chr12 GH12I054169 54169868 54170134 0.26 [{'connected_gene': 'ENSG00000257534', 'score': 0.44}, {'connected_gene': 'GC12M054122', 'score': 0.44}, {'connected_gene': 'GC12P054155', 'score': 0.39}, {'connected_gene': 'SMUG1', 'score': 0.37}]
chr12 GH12I054163 54163908 54164820 0.64 [{'connected_gene': 'ENSG00000257534', 'score': 550.77}, {'connected_gene': 'SP1', 'score': 15.57}, {'connected_gene': 'ZNF740', 'score': 14.46}, {'connected_gene': 'PCBP2', 'score': 14.44}, {'connected_gene': 'ENSG00000258344', 'score': 13.91}, {'connected_gene': 'LOC100652999', 'score': 13.39}, {'connected_gene': 'ATF7', 'score': 13.09}, {'connected_gene': 'AAAS', 'score': 12.24}, {'connected_gene': 'HNRNPA1', 'score': 11.94}, {'connected_gene': 'CALCOCO1', 'score': 10.69}, {'connected_gene': 'CSAD', 'score': 10.36}, {'connected_gene': 'NPFF', 'score': 10.3}, {'connected_gene': 'GC12P054155', 'score': 0.44}, {'connected_gene': 'LOC102724030', 'score': 0.39}, {'connected_gene': 'GC12M054122', 'score': 0.39}, {'connected_gene': 'SMUG1', 'score': 0.34}]
chr12 GH12I054164 54164897 54165046 0.38 [{'connected_gene': 'ENSG00000257534', 'score': 550.77}, {'connected_gene': 'GC12P054155', 'score': 0.44}, {'connected_gene': 'LOC102724030', 'score': 0.39}, {'connected_gene': 'GC12M054122', 'score': 0.39}, {'connected_gene': 'SMUG1', 'score': 0.34}]
chr12 GH12I054159 54159257 54159406 0.7 [{'connected_gene': 'ENSG00000260470', 'score': 5.2}, {'connected_gene': 'GC12P054155', 'score': 0.77}, {'connected_gene': 'LOC102724030', 'score': 0.44}, {'connected_gene': 'ENSG00000257534', 'score': 0.44}, {'connected_gene': 'GC12M054122', 'score': 0.37}, {'connected_gene': 'SMUG1', 'score': 0.31}]

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