PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000413021	[[68279206, 68279456], [68288821, 68288940], [68289184, 68289283], [68289793, 68289893], [68293048, 68293826]]	[[68279329, 68279456], [68288821, 68288940], [68289184, 68289283], [68289793, 68289893], [68293048, 68293560]]
ENST00000565744	[[68279243, 68279456], [68283192, 68283349], [68288821, 68288940], [68289668, 68289756]]	[[68279329, 68279456], [68283192, 68283349], [68288821, 68288940], [68289668, 68289756]]
ENST00000219345	[[68279246, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289668, 68289893], [68293048, 68294961]]	[[68279329, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289668, 68289893], [68293048, 68293560]]
ENST00000566978	[[68279273, 68279456], [68282471, 68282595], [68283192, 68283349], [68288821, 68288941]]	[[68279329, 68279456], [68282471, 68282595], [68283192, 68283202]]
ENST00000564827	[[68279275, 68279456], [68283192, 68283349], [68287324, 68287420], [68288821, 68288940], [68289184, 68289283], [68289793, 68289893], [68293048, 68293077]]	[[68279329, 68279456], [68283192, 68283349], [68287324, 68287420], [68288821, 68288940], [68289184, 68289283], [68289793, 68289893], [68293048, 68293077]]
ENST00000566188	[[68279275, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289793, 68289893], [68293048, 68293595]]	[[68279329, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289793, 68289893], [68293048, 68293157]]
ENST00000444212	[[68279275, 68279456], [68293048, 68293810]]	[[68279329, 68279456], [68293048, 68293560]]
ENST00000562966	[[68279282, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289306]]	None
ENST00000568082	[[68279294, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289608, 68289893], [68293048, 68293155]]	[[68279329, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289608, 68289893], [68293048, 68293155]]
ENST00000562449	[[68288255, 68288940], [68289184, 68289283], [68289668, 68289834]]	None
ENST00000568599	[[68282189, 68282595], [68283192, 68283327]]	None
ENST00000565460	[[68288683, 68289893], [68293048, 68294959]]	None
NM_012320	[[68279246, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289668, 68289893], [68293048, 68294961]]	[[68279329, 68279456], [68283192, 68283349], [68288821, 68288940], [68289184, 68289283], [68289668, 68289893], [68293048, 68293560]]

Promoter

Chrom	Start	End	Description
chr16	68279241	68279252	CAGE_peak_2_at_PLA2G15_5end
chr16	68279256	68279309	CAGE_peak_1_at_PLA2G15_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I067456	67456038	67464509	1.27	[{'connected_gene': 'ATP6V0D1', 'score': 19.88}, {'connected_gene': 'LRRC36', 'score': 11.61}, {'connected_gene': 'PLA2G15', 'score': 5.36}, {'connected_gene': 'GC16M067447', 'score': 0.39}, {'connected_gene': 'GC16M067470', 'score': 0.39}]
chr16	GH16I068239	68239617	68240400	1.02	[{'connected_gene': 'ESRP2', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 12.96}, {'connected_gene': 'PLA2G15', 'score': 0.44}]
chr16	GH16I068203	68203278	68203627	0.2	[{'connected_gene': 'ESRP2', 'score': 11.43}, {'connected_gene': 'PLA2G15', 'score': 11.4}, {'connected_gene': 'SLC7A6', 'score': 10.46}, {'connected_gene': 'PRMT7', 'score': 10.28}, {'connected_gene': 'SLC7A6OS', 'score': 10.28}, {'connected_gene': 'ENSG00000279621', 'score': 0.77}, {'connected_gene': 'RPS12P27', 'score': 0.44}, {'connected_gene': 'NFATC3', 'score': 0.13}]
chr16	GH16I067780	67780602	67782283	0.86	[{'connected_gene': 'RANBP10', 'score': 9.62}, {'connected_gene': 'DPEP2', 'score': 9.02}, {'connected_gene': 'PLA2G15', 'score': 5.48}, {'connected_gene': 'ENSG00000270165', 'score': 0.26}]
chr16	GH16I068204	68204744	68205553	0.2	[{'connected_gene': 'PRMT7', 'score': 22.71}, {'connected_gene': 'ESRP2', 'score': 11.67}, {'connected_gene': 'PLA2G15', 'score': 11.64}, {'connected_gene': 'SLC7A6', 'score': 10.78}, {'connected_gene': 'SLC7A6OS', 'score': 10.28}, {'connected_gene': 'NFATC3', 'score': 10.22}, {'connected_gene': 'RANBP10', 'score': 4.47}, {'connected_gene': 'ENSG00000279621', 'score': 0.77}, {'connected_gene': 'RPS12P27', 'score': 0.77}]
chr16	GH16I068205	68204150	68204645	0.2	[{'connected_gene': 'PRMT7', 'score': 21.9}, {'connected_gene': 'DUS2', 'score': 13.32}, {'connected_gene': 'ESRP2', 'score': 11.43}, {'connected_gene': 'PLA2G15', 'score': 11.4}, {'connected_gene': 'SLC7A6', 'score': 10.47}, {'connected_gene': 'SLC7A6OS', 'score': 10.28}, {'connected_gene': 'ENSG00000279621', 'score': 0.77}, {'connected_gene': 'RPS12P27', 'score': 0.77}, {'connected_gene': 'NFATC3', 'score': 0.13}]
chr16	GH16I068256	68256732	68259848	1.31	[{'connected_gene': 'PRMT7', 'score': 13.62}, {'connected_gene': 'DUS2', 'score': 13.6}, {'connected_gene': 'ENSG00000260441', 'score': 0.77}, {'connected_gene': 'PLA2G15', 'score': 0.39}]
chr16	GH16I068250	68250811	68253347	0.58	[{'connected_gene': 'PRMT7', 'score': 14.1}, {'connected_gene': 'DUS2', 'score': 13.33}, {'connected_gene': 'PLA2G15', 'score': 0.44}, {'connected_gene': 'ENSG00000260441', 'score': 0.44}]
chr16	GH16I068254	68254632	68256064	0.2	[{'connected_gene': 'PRMT7', 'score': 13.44}, {'connected_gene': 'ENSG00000260441', 'score': 0.44}, {'connected_gene': 'PLA2G15', 'score': 0.39}]
chr16	GH16I068061	68061249	68066588	1.28	[{'connected_gene': 'PRMT7', 'score': 29.07}, {'connected_gene': 'EDC4', 'score': 21.34}, {'connected_gene': 'E2F4', 'score': 16.96}, {'connected_gene': 'ENSG00000263276', 'score': 15.23}, {'connected_gene': 'CTCF', 'score': 14.8}, {'connected_gene': 'FBXL8', 'score': 12.96}, {'connected_gene': 'NFATC3', 'score': 12.36}, {'connected_gene': 'ENSG00000270165', 'score': 11.89}, {'connected_gene': 'THAP11', 'score': 10.93}, {'connected_gene': 'DDX28', 'score': 10.89}, {'connected_gene': 'DUS2', 'score': 10.81}, {'connected_gene': 'RNU6-359P', 'score': 10.66}, {'connected_gene': 'DPEP3', 'score': 10.41}, {'connected_gene': 'RANBP10', 'score': 10.3}, {'connected_gene': 'CENPT', 'score': 10.3}, {'connected_gene': 'PLA2G15', 'score': 5.62}, {'connected_gene': 'ENSG00000261864', 'score': 0.39}]
chr16	GH16I068253	68253749	68254315	0.75	[{'connected_gene': 'ZDHHC1', 'score': 64.48}, {'connected_gene': 'CTCF', 'score': 56.88}, {'connected_gene': 'EDC4', 'score': 53.36}, {'connected_gene': 'CENPT', 'score': 49.06}, {'connected_gene': 'ENKD1', 'score': 45.96}, {'connected_gene': 'ENSG00000263276', 'score': 42.23}, {'connected_gene': 'CHTF8', 'score': 40.15}, {'connected_gene': 'SNTB2', 'score': 35.43}, {'connected_gene': 'ENSG00000270165', 'score': 33.47}, {'connected_gene': 'RANBP10', 'score': 23.01}, {'connected_gene': 'THAP11', 'score': 18.54}, {'connected_gene': 'ACD', 'score': 17.89}, {'connected_gene': 'ZFP90', 'score': 12.65}, {'connected_gene': 'ENSG00000262514', 'score': 10.82}, {'connected_gene': 'ENSG00000260891', 'score': 10.65}, {'connected_gene': 'SLC12A4', 'score': 10.59}, {'connected_gene': 'C16orf86', 'score': 10.05}, {'connected_gene': 'UTP4', 'score': 9.87}, {'connected_gene': 'NFATC3', 'score': 9.81}, {'connected_gene': 'ENSG00000260441', 'score': 0.44}, {'connected_gene': 'PLA2G15', 'score': 0.44}]
chr16	GH16I068244	68244396	68247487	2.23	[{'connected_gene': 'PLA2G15', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 14.15}, {'connected_gene': 'ENSG00000260441', 'score': 0.39}]
chr16	GH16I068248	68248971	68249791	0.2	[{'connected_gene': 'PLA2G15', 'score': 0.77}, {'connected_gene': 'ENSG00000260441', 'score': 0.39}]
chr16	GH16I067444	67444650	67453164	1.07	[{'connected_gene': 'GC16M067447', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 32.08}, {'connected_gene': 'ZDHHC1', 'score': 11.67}, {'connected_gene': 'AGRP', 'score': 11.24}, {'connected_gene': 'RIPOR1', 'score': 10.41}, {'connected_gene': 'E2F4', 'score': 10.34}, {'connected_gene': 'EXOC3L1', 'score': 10.34}, {'connected_gene': 'KIAA0895L', 'score': 10.34}, {'connected_gene': 'TMEM208', 'score': 9.9}, {'connected_gene': 'LRRC29', 'score': 9.9}, {'connected_gene': 'PARD6A', 'score': 9.83}, {'connected_gene': 'ACD', 'score': 9.83}, {'connected_gene': 'LRRC36', 'score': 9.65}, {'connected_gene': 'ENSG00000237718', 'score': 9.58}, {'connected_gene': 'CARMIL2', 'score': 9.56}, {'connected_gene': 'RANBP10', 'score': 9.23}, {'connected_gene': 'PLA2G15', 'score': 5.67}, {'connected_gene': 'PRMT7', 'score': 5.42}, {'connected_gene': 'GC16M067470', 'score': 0.34}]
chr16	GH16I068260	68260862	68261371	0.31	[{'connected_gene': 'ENSG00000260441', 'score': 550.77}, {'connected_gene': 'SLC7A6', 'score': 14.7}, {'connected_gene': 'PLA2G15', 'score': 0.37}]
chr16	GH16I068200	68200430	68201029	0.72	[{'connected_gene': 'ENSG00000279621', 'score': 550.77}, {'connected_gene': 'ENSG00000262514', 'score': 550.77}, {'connected_gene': 'ESRP2', 'score': 11.41}, {'connected_gene': 'PLA2G15', 'score': 11.4}, {'connected_gene': 'SLC7A6', 'score': 10.46}, {'connected_gene': 'PRMT7', 'score': 10.27}, {'connected_gene': 'SLC7A6OS', 'score': 10.27}, {'connected_gene': 'NFATC3', 'score': 0.13}]
chr16	GH16I068201	68201256	68202653	0.77	[{'connected_gene': 'ENSG00000279621', 'score': 550.77}, {'connected_gene': 'ZFP90', 'score': 12.64}, {'connected_gene': 'ESRP2', 'score': 11.41}, {'connected_gene': 'PLA2G15', 'score': 11.4}, {'connected_gene': 'SLC7A6', 'score': 10.46}, {'connected_gene': 'SLC7A6OS', 'score': 10.28}, {'connected_gene': 'PRMT7', 'score': 10.28}, {'connected_gene': 'RPS12P27', 'score': 0.44}, {'connected_gene': 'NFATC3', 'score': 0.13}]
chr16	GH16I068209	68209174	68210042	0.2	[{'connected_gene': 'GC16P068209', 'score': 550.77}, {'connected_gene': 'RPS12P27', 'score': 550.77}, {'connected_gene': 'ESRP2', 'score': 11.97}, {'connected_gene': 'PLA2G15', 'score': 11.94}, {'connected_gene': 'DUS2', 'score': 11.77}, {'connected_gene': 'SLC7A6', 'score': 11.23}, {'connected_gene': 'NFATC3', 'score': 10.18}, {'connected_gene': 'SLC7A6OS', 'score': 9.76}, {'connected_gene': 'PRMT7', 'score': 9.76}, {'connected_gene': 'EDC4', 'score': 9.32}, {'connected_gene': 'ENSG00000260891', 'score': 0.39}]
chr16	GH16I068210	68210445	68212172	0.63	[{'connected_gene': 'GC16P068209', 'score': 550.77}, {'connected_gene': 'RPS12P27', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 22.12}, {'connected_gene': 'DUS2', 'score': 13.31}, {'connected_gene': 'ESRP2', 'score': 11.97}, {'connected_gene': 'PLA2G15', 'score': 11.95}, {'connected_gene': 'SLC7A6', 'score': 11.23}, {'connected_gene': 'NFATC3', 'score': 10.18}, {'connected_gene': 'SLC7A6OS', 'score': 9.77}, {'connected_gene': 'EDC4', 'score': 9.32}, {'connected_gene': 'DPEP2', 'score': 8.28}, {'connected_gene': 'ENSG00000260891', 'score': 0.39}]