PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000330753	[[85996487, 85996878], [86087482, 86095034]]	[[86087858, 86089841]]
ENST00000556335	[[85996489, 85996878], [86018037, 86018124], [86019076, 86019165]]	None
ENST00000557419	[[85996506, 85996878], [85997510, 85997566], [86019076, 86019187], [86027533, 86027633], [86028986, 86029396]]	None
ENST00000554746	[[85996571, 85996900], [86087482, 86090431]]	[[86087858, 86089841]]
ENST00000555398	[[86025652, 86025759], [86027533, 86027633], [86029042, 86029394]]	None
ENST00000553627	[[86027206, 86027633], [86028986, 86029087]]	None
ENST00000553650	[[86090033, 86090249], [86092222, 86092572]]	None
NR_144386	[[85996368, 85996878], [86027533, 86027633], [86028986, 86029396]]	None
NR_144387	[[85996368, 85996878], [85997510, 85997566], [86019076, 86019187], [86027533, 86027633], [86028986, 86029396]]	None
NM_001346146	[[85996368, 85996623], [86087482, 86095040]]	[[86087858, 86089841]]
NM_013231	[[85996368, 85996878], [86087482, 86095040]]	[[86087858, 86089841]]
NM_001346144	[[85996368, 85996900], [86087482, 86095040]]	[[86087858, 86089841]]
NM_001346145	[[85997735, 85998127], [86087482, 86095040]]	[[86087858, 86089841]]
NR_144385	[[85999665, 86000337], [86027533, 86027633], [86028986, 86029396]]	None
NM_001346143	[[85999665, 86000337], [86087482, 86095040]]	[[86087858, 86089841]]

Promoter

Chrom	Start	End	Description
chr14	85996343	85996386	CAGE_peak_6_at_FLRT2_5end
chr14	85996401	85996415	CAGE_peak_9_at_FLRT2_5end
chr14	85996451	85996468	CAGE_peak_2_at_FLRT2_5end
chr14	85996471	85996497	CAGE_peak_1_at_FLRT2_5end
chr14	85996507	85996521	CAGE_peak_3_at_FLRT2_5end
chr14	85999513	85999533	CAGE_peak_7_at_FLRT2_5end
chr14	85999534	85999550	CAGE_peak_4_at_FLRT2_5end
chr14	86087821	86087826	CAGE_peak_5_at_FLRT2_5end
chr14	86088047	86088056	CAGE_peak_8_at_FLRT2_5end
chr14	86089568	86089571	CAGE_peak_11_at_FLRT2_5end
chr14	86089754	86089758	CAGE_peak_10_at_FLRT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I085513	85513362	85513502	0.22	[{'connected_gene': 'FLRT2', 'score': 4.13}, {'connected_gene': 'ENSG00000258902', 'score': 0.77}, {'connected_gene': 'LINC00911', 'score': 0.13}, {'connected_gene': 'GC14P085297', 'score': 0.08}, {'connected_gene': 'GC14P085198', 'score': 0.06}]
chr14	GH14I085512	85512189	85512384	0.22	[{'connected_gene': 'FLRT2', 'score': 9.45}, {'connected_gene': 'ENSG00000258902', 'score': 0.77}, {'connected_gene': 'LINC00911', 'score': 0.13}, {'connected_gene': 'GC14P085297', 'score': 0.08}, {'connected_gene': 'GC14P085198', 'score': 0.06}]
chr14	GH14I085423	85423080	85424580	0.38	[{'connected_gene': 'FLRT2', 'score': 8.24}, {'connected_gene': 'LINC00911', 'score': 0.31}, {'connected_gene': 'ENSG00000258902', 'score': 0.16}, {'connected_gene': 'GC14P085297', 'score': 0.13}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085481	85481184	85483826	0.71	[{'connected_gene': 'FLRT2', 'score': 24.53}, {'connected_gene': 'ENSG00000258902', 'score': 0.29}, {'connected_gene': 'LINC00911', 'score': 0.17}, {'connected_gene': 'GC14P085297', 'score': 0.09}, {'connected_gene': 'GC14P085198', 'score': 0.06}]
chr14	GH14I085414	85414059	85418127	1.34	[{'connected_gene': 'FLRT2', 'score': 6.85}, {'connected_gene': 'LINC00911', 'score': 0.34}, {'connected_gene': 'ENSG00000258902', 'score': 0.15}, {'connected_gene': 'GC14P085297', 'score': 0.13}, {'connected_gene': 'GC14P085198', 'score': 0.08}]
chr14	GH14I085420	85420405	85422433	0.71	[{'connected_gene': 'FLRT2', 'score': 6.57}, {'connected_gene': 'LINC00911', 'score': 0.31}, {'connected_gene': 'ENSG00000258902', 'score': 0.15}, {'connected_gene': 'GC14P085297', 'score': 0.13}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085439	85439320	85441663	0.58	[{'connected_gene': 'FLRT2', 'score': 8.18}, {'connected_gene': 'LINC00911', 'score': 0.25}, {'connected_gene': 'ENSG00000258902', 'score': 0.18}, {'connected_gene': 'GC14P085297', 'score': 0.11}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085436	85436390	85439220	0.72	[{'connected_gene': 'FLRT2', 'score': 8.0}, {'connected_gene': 'LINC00911', 'score': 0.26}, {'connected_gene': 'ENSG00000258902', 'score': 0.18}, {'connected_gene': 'GC14P085297', 'score': 0.11}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085293	85293401	85294248	0.31	[{'connected_gene': 'FLRT2', 'score': 10.52}, {'connected_gene': 'LOC100506731', 'score': 10.34}, {'connected_gene': 'GC14P085297', 'score': 0.77}, {'connected_gene': 'SNORD3P3', 'score': 0.34}, {'connected_gene': 'GC14P085198', 'score': 0.15}]
chr14	GH14I085568	85568541	85570654	0.2	[{'connected_gene': 'FLRT2', 'score': 11.55}, {'connected_gene': 'LOC100506731', 'score': 11.47}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085546	85546457	85546626	0.31	[{'connected_gene': 'FLRT2', 'score': 4.37}, {'connected_gene': 'LOC100506731', 'score': 0.37}, {'connected_gene': 'GC14P085297', 'score': 0.07}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085571	85571560	85577930	1	[{'connected_gene': 'FLRT2', 'score': 16.7}, {'connected_gene': 'LOC100506731', 'score': 11.85}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085599	85599218	85601592	1.15	[{'connected_gene': 'FLRT2', 'score': 11.24}, {'connected_gene': 'LOC100506731', 'score': 0.19}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.06}]
chr14	GH14I085526	85526528	85539703	1.97	[{'connected_gene': 'FLRT2', 'score': 561.12}, {'connected_gene': 'LOC100506731', 'score': 0.77}, {'connected_gene': 'ENSG00000258945', 'score': 0.77}, {'connected_gene': 'GC14P085297', 'score': 0.07}, {'connected_gene': 'GC14P085198', 'score': 0.05}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085579	85579537	85581558	0.71	[{'connected_gene': 'FLRT2', 'score': 5.63}, {'connected_gene': 'LOC100506731', 'score': 0.23}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085470	85470547	85472672	1.05	[{'connected_gene': 'FLRT2', 'score': 17.68}, {'connected_gene': 'LOC100506731', 'score': 10.95}, {'connected_gene': 'ENSG00000258902', 'score': 0.25}, {'connected_gene': 'LINC00911', 'score': 0.18}, {'connected_gene': 'GC14P085297', 'score': 0.09}, {'connected_gene': 'GC14P085198', 'score': 0.06}]
chr14	GH14I085442	85442820	85444657	0.2	[{'connected_gene': 'FLRT2', 'score': 19.07}, {'connected_gene': 'LOC100506731', 'score': 11.14}, {'connected_gene': 'LINC00911', 'score': 0.25}, {'connected_gene': 'ENSG00000258902', 'score': 0.19}, {'connected_gene': 'GC14P085297', 'score': 0.11}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085474	85474793	85476586	0.86	[{'connected_gene': 'FLRT2', 'score': 15.84}, {'connected_gene': 'LOC100506731', 'score': 11.05}, {'connected_gene': 'ENSG00000258902', 'score': 0.26}, {'connected_gene': 'LINC00911', 'score': 0.18}, {'connected_gene': 'GC14P085297', 'score': 0.1}, {'connected_gene': 'GC14P085198', 'score': 0.06}]
chr14	GH14I085519	85519035	85520591	0.85	[{'connected_gene': 'FLRT2', 'score': 9.47}, {'connected_gene': 'ENSG00000258902', 'score': 0.77}, {'connected_gene': 'ENSG00000258945', 'score': 0.44}, {'connected_gene': 'GC14P085297', 'score': 0.07}, {'connected_gene': 'GC14P085198', 'score': 0.05}]
chr14	GH14I085564	85564730	85567647	0.89	[{'connected_gene': 'LOC100506731', 'score': 11.74}, {'connected_gene': 'FLRT2', 'score': 11.74}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085626	85626297	85626446	0.31	[{'connected_gene': 'LOC100506731', 'score': 0.15}, {'connected_gene': 'FLRT2', 'score': 0.15}, {'connected_gene': 'LINC02328', 'score': 0.06}, {'connected_gene': 'GC14P085297', 'score': 0.05}]
chr14	GH14I085619	85619801	85620200	0.2	[{'connected_gene': 'LOC100506731', 'score': 0.17}, {'connected_gene': 'FLRT2', 'score': 0.17}, {'connected_gene': 'LINC02328', 'score': 0.06}, {'connected_gene': 'GC14P085297', 'score': 0.05}]
chr14	GH14I085616	85616602	85617029	0.2	[{'connected_gene': 'LOC100506731', 'score': 0.17}, {'connected_gene': 'FLRT2', 'score': 0.17}, {'connected_gene': 'LINC02328', 'score': 0.06}, {'connected_gene': 'GC14P085297', 'score': 0.06}]
chr14	GH14I085607	85607098	85608599	1.19	[{'connected_gene': 'LOC100506731', 'score': 11.16}, {'connected_gene': 'FLRT2', 'score': 11.16}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085586	85586725	85588133	1.3	[{'connected_gene': 'LOC100506731', 'score': 10.81}, {'connected_gene': 'FLRT2', 'score': 10.81}, {'connected_gene': 'GC14P085297', 'score': 0.06}, {'connected_gene': 'LINC02328', 'score': 0.05}]
chr14	GH14I085450	85450982	85451908	0.2	[{'connected_gene': 'LOC100506731', 'score': 10.8}, {'connected_gene': 'FLRT2', 'score': 10.8}, {'connected_gene': 'LINC00911', 'score': 0.22}, {'connected_gene': 'ENSG00000258902', 'score': 0.2}, {'connected_gene': 'GC14P085297', 'score': 0.1}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085444	85444800	85445395	0.58	[{'connected_gene': 'LOC100506731', 'score': 10.78}, {'connected_gene': 'FLRT2', 'score': 10.78}, {'connected_gene': 'LINC00911', 'score': 0.23}, {'connected_gene': 'ENSG00000258902', 'score': 0.19}, {'connected_gene': 'GC14P085297', 'score': 0.11}, {'connected_gene': 'GC14P085198', 'score': 0.07}]
chr14	GH14I085296	85296057	85297006	0.51	[{'connected_gene': 'GC14P085297', 'score': 550.77}, {'connected_gene': 'FLRT2', 'score': 10.52}, {'connected_gene': 'SNORD3P3', 'score': 0.34}, {'connected_gene': 'GC14P085198', 'score': 0.15}]
chr14	GH14I085515	85515877	85517683	0.97	[{'connected_gene': 'ENSG00000258902', 'score': 550.77}, {'connected_gene': 'FLRT2', 'score': 6.97}, {'connected_gene': 'LINC00911', 'score': 0.13}, {'connected_gene': 'GC14P085297', 'score': 0.08}, {'connected_gene': 'GC14P085198', 'score': 0.06}]