PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000380490	[[31309644, 31309812], [31318196, 31318296], [31326188, 31326259], [31330080, 31330162], [31338080, 31338556]]	[[31309742, 31309812], [31318196, 31318296], [31326188, 31326259], [31330080, 31330162], [31338080, 31338243]]
ENST00000479597	[[31316472, 31316682], [31318196, 31318533]]	None
NM_001204406	[[31287614, 31287978], [31309687, 31309812], [31318196, 31318296], [31326188, 31326259], [31330080, 31330162], [31338080, 31338565]]	[[31287862, 31287978], [31309687, 31309812], [31318196, 31318296], [31326188, 31326259], [31330080, 31330162], [31338080, 31338243]]
NM_001629	[[31309644, 31309812], [31318196, 31318296], [31326188, 31326259], [31330080, 31330162], [31338080, 31338565]]	[[31309742, 31309812], [31318196, 31318296], [31326188, 31326259], [31330080, 31330162], [31338080, 31338243]]

Promoter

Chrom	Start	End	Description
chr13	31287614	31287629	CAGE_peak_3_at_ALOX5AP_5end
chr13	31309660	31309726	CAGE_peak_1_at_ALOX5AP_5end
chr13	31309728	31309739	CAGE_peak_2_at_ALOX5AP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I030718	30718360	30721200	1.2	[{'connected_gene': 'MEDAG', 'score': 9.6}, {'connected_gene': 'ALOX5AP', 'score': 7.44}, {'connected_gene': 'LINC00398', 'score': 0.18}]
chr13	GH13I030790	30790781	30793754	1.56	[{'connected_gene': 'HMGB1', 'score': 16.52}, {'connected_gene': 'USPL1', 'score': 10.28}, {'connected_gene': 'MEDAG', 'score': 9.75}, {'connected_gene': 'LINC00398', 'score': 0.39}, {'connected_gene': 'ALOX5AP', 'score': 0.18}]
chr13	GH13I030689	30689539	30691491	1.09	[{'connected_gene': 'ALOX5AP', 'score': 17.83}, {'connected_gene': 'MEDAG', 'score': 9.72}, {'connected_gene': 'USPL1', 'score': 4.23}, {'connected_gene': 'ENSG00000275788', 'score': 0.44}]
chr13	GH13I030742	30742300	30748341	1.6	[{'connected_gene': 'ALOX5AP', 'score': 38.86}, {'connected_gene': 'HMGB1', 'score': 6.11}, {'connected_gene': 'USPL1', 'score': 4.61}, {'connected_gene': 'LINC00398', 'score': 0.22}]
chr13	GH13I031044	31044402	31047704	1.32	[{'connected_gene': 'ALOX5AP', 'score': 1.25}, {'connected_gene': 'LOC102723392', 'score': 0.39}, {'connected_gene': 'LINC01066', 'score': 0.25}]
chr13	GH13I030681	30681163	30682713	0.76	[{'connected_gene': 'ALOX5AP', 'score': 23.03}, {'connected_gene': 'USPL1', 'score': 12.25}, {'connected_gene': 'HMGB1', 'score': 10.79}, {'connected_gene': 'MEDAG', 'score': 10.29}, {'connected_gene': 'ENSG00000275788', 'score': 0.77}, {'connected_gene': 'TRN-GTT2-4', 'score': 0.44}]
chr13	GH13I030679	30679384	30680112	0.52	[{'connected_gene': 'ALOX5AP', 'score': 12.44}, {'connected_gene': 'USPL1', 'score': 10.79}, {'connected_gene': 'HMGB1', 'score': 10.79}, {'connected_gene': 'MEDAG', 'score': 10.29}, {'connected_gene': 'ENSG00000275788', 'score': 0.77}, {'connected_gene': 'TRN-GTT2-4', 'score': 0.44}]
chr13	GH13I030714	30714592	30715400	0.54	[{'connected_gene': 'ALOX5AP', 'score': 599.23}, {'connected_gene': 'USPL1', 'score': 15.55}, {'connected_gene': 'HMGB1', 'score': 10.59}, {'connected_gene': 'LINC00398', 'score': 0.17}]
chr13	GH13I030734	30734080	30741222	2.04	[{'connected_gene': 'ALOX5AP', 'score': 607.67}, {'connected_gene': 'USPL1', 'score': 8.89}, {'connected_gene': 'LINC00398', 'score': 0.2}]
chr13	GH13I030751	30751945	30752989	0.58	[{'connected_gene': 'ALOX5AP', 'score': 0.28}, {'connected_gene': 'LINC00398', 'score': 0.23}]
chr13	GH13I030766	30766843	30767980	0.69	[{'connected_gene': 'ALOX5AP', 'score': 7.29}, {'connected_gene': 'LINC00398', 'score': 0.28}]
chr13	GH13I030730	30730158	30731375	0.74	[{'connected_gene': 'ALOX5AP', 'score': 4.93}, {'connected_gene': 'LINC00398', 'score': 0.19}]
chr13	GH13I030712	30712540	30714000	1.36	[{'connected_gene': 'ALOX5AP', 'score': 550.77}, {'connected_gene': 'ENSG00000275788', 'score': 0.31}]
chr13	GH13I030795	30795690	30797935	1.43	[{'connected_gene': 'USPL1', 'score': 10.3}, {'connected_gene': 'HMGB1', 'score': 10.3}, {'connected_gene': 'ALOX5AP', 'score': 3.67}, {'connected_gene': 'LINC00398', 'score': 0.44}]
chr13	GH13I030773	30773501	30775449	0.31	[{'connected_gene': 'LINC00398', 'score': 0.31}, {'connected_gene': 'ALOX5AP', 'score': 0.21}]
chr13	GH13I030798	30798185	30800339	0.83	[{'connected_gene': 'LINC00398', 'score': 0.77}, {'connected_gene': 'ALOX5AP', 'score': 0.17}]
chr13	GH13I030697	30697343	30698882	0.72	[{'connected_gene': 'ENSG00000275788', 'score': 0.39}, {'connected_gene': 'ALOX5AP', 'score': 0.37}]
chr13	GH13I030696	30696173	30697200	0.79	[{'connected_gene': 'ENSG00000275788', 'score': 0.39}, {'connected_gene': 'ALOX5AP', 'score': 0.37}]