PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358752	[[94277016, 94283063]]	[[94277299, 94278892]]
NM_002033	[[94277016, 94283064]]	[[94277299, 94278892]]

Promoter

Chrom	Start	End	Description
chr11	94277061	94277097	CAGE_peak_3_at_FUT4_5end
chr11	94277099	94277123	CAGE_peak_2_at_FUT4_5end
chr11	94277542	94277569	CAGE_peak_1_at_FUT4_5end
chr11	94277570	94277601	CAGE_peak_4_at_FUT4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I094238	94237935	94238064	0.71	[{'connected_gene': 'MED17', 'score': 26.27}, {'connected_gene': 'MRE11', 'score': 19.22}, {'connected_gene': 'ANKRD49', 'score': 14.54}, {'connected_gene': 'SNORA1', 'score': 12.18}, {'connected_gene': 'BUD13P1', 'score': 10.96}, {'connected_gene': 'CEP295', 'score': 10.76}, {'connected_gene': 'FUT4', 'score': 10.13}, {'connected_gene': 'LOC105369435', 'score': 0.28}, {'connected_gene': 'GC11P094202', 'score': 0.28}, {'connected_gene': 'GC11P094183', 'score': 0.23}, {'connected_gene': 'IZUMO1R', 'score': 0.2}]
chr11	GH11I094237	94237795	94237864	0.82	[{'connected_gene': 'CEP295', 'score': 103.26}, {'connected_gene': 'MED17', 'score': 90.83}, {'connected_gene': 'MRE11', 'score': 68.78}, {'connected_gene': 'ANKRD49', 'score': 48.15}, {'connected_gene': 'SNORA1', 'score': 43.8}, {'connected_gene': 'BUD13P1', 'score': 42.83}, {'connected_gene': 'ENSG00000270578', 'score': 30.79}, {'connected_gene': 'KDM4D', 'score': 10.93}, {'connected_gene': 'ENSG00000255893', 'score': 10.41}, {'connected_gene': 'FUT4', 'score': 10.13}, {'connected_gene': 'SNORA18', 'score': 9.68}, {'connected_gene': 'LOC105369435', 'score': 0.28}, {'connected_gene': 'GC11P094202', 'score': 0.28}, {'connected_gene': 'GC11P094183', 'score': 0.23}, {'connected_gene': 'IZUMO1R', 'score': 0.2}]
chr11	GH11I094526	94526401	94527000	0.66	[{'connected_gene': 'ANKRD49', 'score': 10.54}, {'connected_gene': 'C11orf97', 'score': 0.39}, {'connected_gene': 'PIWIL4', 'score': 0.37}, {'connected_gene': 'FUT4', 'score': 0.37}]
chr11	GH11I094525	94525750	94526285	0.51	[{'connected_gene': 'ANKRD49', 'score': 10.54}, {'connected_gene': 'C11orf97', 'score': 0.39}, {'connected_gene': 'PIWIL4', 'score': 0.37}, {'connected_gene': 'FUT4', 'score': 0.37}]
chr11	GH11I094512	94512001	94513601	1.28	[{'connected_gene': 'MRE11', 'score': 580.8}, {'connected_gene': 'C11orf97', 'score': 550.77}, {'connected_gene': 'PIWIL4', 'score': 0.29}, {'connected_gene': 'FUT4', 'score': 0.29}]
chr11	GH11I094539	94539160	94540229	0.51	[{'connected_gene': 'MRE11', 'score': 19.09}, {'connected_gene': 'ANKRD49', 'score': 10.33}, {'connected_gene': 'ENSG00000255893', 'score': 9.98}, {'connected_gene': 'PANX1', 'score': 8.04}, {'connected_gene': 'PIWIL4', 'score': 0.77}, {'connected_gene': 'FUT4', 'score': 0.77}, {'connected_gene': 'C11orf97', 'score': 0.31}]
chr11	GH11I094541	94540463	94540762	0.2	[{'connected_gene': 'MRE11', 'score': 10.39}, {'connected_gene': 'ANKRD49', 'score': 10.33}, {'connected_gene': 'ENSG00000255893', 'score': 10.0}, {'connected_gene': 'PIWIL4', 'score': 0.77}, {'connected_gene': 'FUT4', 'score': 0.77}, {'connected_gene': 'C11orf97', 'score': 0.31}]
chr11	GH11I094537	94537441	94538150	0.2	[{'connected_gene': 'MRE11', 'score': 29.91}, {'connected_gene': 'ANKRD49', 'score': 10.34}, {'connected_gene': 'ENSG00000255893', 'score': 9.99}, {'connected_gene': 'PIWIL4', 'score': 0.44}, {'connected_gene': 'FUT4', 'score': 0.44}, {'connected_gene': 'C11orf97', 'score': 0.31}]
chr11	GH11I094536	94536097	94537213	0.4	[{'connected_gene': 'MRE11', 'score': 29.98}, {'connected_gene': 'ANKRD49', 'score': 10.34}, {'connected_gene': 'ENSG00000255893', 'score': 9.99}, {'connected_gene': 'PIWIL4', 'score': 0.44}, {'connected_gene': 'FUT4', 'score': 0.44}, {'connected_gene': 'C11orf97', 'score': 0.34}]
chr11	GH11I094533	94533736	94534861	0.94	[{'connected_gene': 'MRE11', 'score': 18.5}, {'connected_gene': 'ANKRD49', 'score': 10.34}, {'connected_gene': 'ENSG00000255893', 'score': 9.99}, {'connected_gene': 'PIWIL4', 'score': 0.44}, {'connected_gene': 'FUT4', 'score': 0.44}, {'connected_gene': 'C11orf97', 'score': 0.34}]
chr11	GH11I095364	95364321	95364906	0.8	[{'connected_gene': 'MRE11', 'score': 19.19}, {'connected_gene': 'ANKRD49', 'score': 14.5}, {'connected_gene': 'FAM76B', 'score': 14.26}, {'connected_gene': 'SESN3', 'score': 10.29}, {'connected_gene': 'MAML2', 'score': 10.28}, {'connected_gene': 'LOC101929295', 'score': 10.25}, {'connected_gene': 'FUT4', 'score': 10.1}, {'connected_gene': 'GC11M095337', 'score': 0.31}, {'connected_gene': 'LOC105369439', 'score': 0.15}]
chr11	GH11I094586	94586355	94589578	0.49	[{'connected_gene': 'MRE11', 'score': 7.61}, {'connected_gene': 'FUT4', 'score': 7.33}, {'connected_gene': 'ENSG00000255893', 'score': 7.33}, {'connected_gene': 'SNORA1', 'score': 5.28}, {'connected_gene': 'GC11M094556', 'score': 0.34}, {'connected_gene': 'PIWIL4', 'score': 0.26}, {'connected_gene': 'LOC105369436', 'score': 0.25}, {'connected_gene': 'LOC105369438', 'score': 0.1}]
chr11	GH11I094583	94583201	94584869	1.41	[{'connected_gene': 'MRE11', 'score': 7.65}, {'connected_gene': 'ENSG00000255893', 'score': 5.75}, {'connected_gene': 'FUT4', 'score': 5.25}, {'connected_gene': 'ANKRD49', 'score': 2.66}, {'connected_gene': 'PANX1', 'score': 1.75}, {'connected_gene': 'GC11M094556', 'score': 0.34}, {'connected_gene': 'PIWIL4', 'score': 0.26}, {'connected_gene': 'LOC105369436', 'score': 0.23}, {'connected_gene': 'LOC105369438', 'score': 0.1}]
chr11	GH11I094574	94574001	94575384	0.96	[{'connected_gene': 'MRE11', 'score': 7.11}, {'connected_gene': 'FUT4', 'score': 6.17}, {'connected_gene': 'GC11M094556', 'score': 0.39}, {'connected_gene': 'PIWIL4', 'score': 0.29}, {'connected_gene': 'LOC105369436', 'score': 0.21}, {'connected_gene': 'LOC105369438', 'score': 0.1}]
chr11	GH11I094540	94540861	94541116	0.2	[{'connected_gene': 'MRE11', 'score': 9.12}, {'connected_gene': 'PIWIL4', 'score': 0.77}, {'connected_gene': 'FUT4', 'score': 0.77}, {'connected_gene': 'C11orf97', 'score': 0.31}]
chr11	GH11I094543	94541453	94541694	0.2	[{'connected_gene': 'MRE11', 'score': 30.21}, {'connected_gene': 'PIWIL4', 'score': 0.77}, {'connected_gene': 'FUT4', 'score': 0.77}, {'connected_gene': 'C11orf97', 'score': 0.31}]
chr11	GH11I094542	94542835	94549648	2.23	[{'connected_gene': 'FUT4', 'score': 556.37}, {'connected_gene': 'GC11M094542', 'score': 550.77}, {'connected_gene': 'PIR62201', 'score': 550.77}, {'connected_gene': 'GC11P094548', 'score': 550.77}, {'connected_gene': 'MED17', 'score': 27.13}, {'connected_gene': 'CEP295', 'score': 22.53}, {'connected_gene': 'MRE11', 'score': 16.14}, {'connected_gene': 'ANKRD49', 'score': 14.15}, {'connected_gene': 'SNORA1', 'score': 10.86}, {'connected_gene': 'ENSG00000255666', 'score': 6.39}, {'connected_gene': 'LOC105369435', 'score': 5.88}, {'connected_gene': 'PIWIL4', 'score': 0.77}, {'connected_gene': 'LOC105369438', 'score': 0.08}]
chr11	GH11I094127	94127285	94137684	2.78	[{'connected_gene': 'PANX1', 'score': 574.06}, {'connected_gene': 'MED17', 'score': 43.25}, {'connected_gene': 'ANKRD49', 'score': 30.69}, {'connected_gene': 'MRE11', 'score': 26.25}, {'connected_gene': 'SNORA1', 'score': 23.78}, {'connected_gene': 'HEPHL1', 'score': 17.55}, {'connected_gene': 'FUT4', 'score': 2.13}, {'connected_gene': 'PIR47114', 'score': 0.77}, {'connected_gene': 'GC11P094183', 'score': 0.23}]
chr11	GH11I094544	94541849	94542102	0.2	[{'connected_gene': 'PIWIL4', 'score': 550.77}, {'connected_gene': 'FUT4', 'score': 550.77}, {'connected_gene': 'MRE11', 'score': 5.12}, {'connected_gene': 'C11orf97', 'score': 0.31}]
chr11	GH11I094601	94601942	94604147	1.49	[{'connected_gene': 'LOC105369438', 'score': 10.83}, {'connected_gene': 'PIWIL4', 'score': 10.69}, {'connected_gene': 'FUT4', 'score': 9.82}, {'connected_gene': 'ENSG00000255893', 'score': 9.66}, {'connected_gene': 'MRE11', 'score': 7.65}, {'connected_gene': 'PANX1', 'score': 1.72}, {'connected_gene': 'ANKRD49', 'score': 1.26}, {'connected_gene': 'LOC105369436', 'score': 0.29}, {'connected_gene': 'GC11M094556', 'score': 0.28}]
chr11	GH11I094581	94581801	94582600	1.16	[{'connected_gene': 'ENSG00000255666', 'score': 6.63}, {'connected_gene': 'FUT4', 'score': 5.88}, {'connected_gene': 'SNORA1', 'score': 4.47}, {'connected_gene': 'GC11M094556', 'score': 0.37}, {'connected_gene': 'PIWIL4', 'score': 0.28}, {'connected_gene': 'LOC105369436', 'score': 0.23}, {'connected_gene': 'LOC105369438', 'score': 0.1}]
chr11	GH11I094557	94557991	94559000	0.79	[{'connected_gene': 'ENSG00000280167', 'score': 550.77}, {'connected_gene': 'ENSG00000255893', 'score': 9.69}, {'connected_gene': 'FUT4', 'score': 6.41}, {'connected_gene': 'GC11M094556', 'score': 0.44}, {'connected_gene': 'PIWIL4', 'score': 0.39}, {'connected_gene': 'PIR62201', 'score': 0.39}, {'connected_gene': 'GC11P094548', 'score': 0.39}, {'connected_gene': 'LOC105369438', 'score': 0.09}]
chr11	GH11I094549	94549801	94551200	1.09	[{'connected_gene': 'ENSG00000255893', 'score': 10.2}, {'connected_gene': 'FUT4', 'score': 5.47}, {'connected_gene': 'LOC105369435', 'score': 5.09}, {'connected_gene': 'PIR62201', 'score': 0.77}, {'connected_gene': 'GC11P094548', 'score': 0.77}, {'connected_gene': 'PIWIL4', 'score': 0.44}, {'connected_gene': 'ENSG00000280167', 'score': 0.44}, {'connected_gene': 'LOC105369438', 'score': 0.09}]