PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000306346	[[32946660, 32948409], [32949279, 32949624], [32953419, 32953564], [32953839, 32954328], [32957241, 32957301]]	[[32948314, 32948409], [32949279, 32949624], [32953419, 32953564], [32953839, 32954256]]
ENST00000589332	[[32948434, 32949624], [32953419, 32953564], [32953839, 32954328], [32957241, 32957301]]	[[32949178, 32949624], [32953419, 32953564], [32953839, 32954256]]
ENST00000586585	[[32951774, 32954329]]	None
ENST00000586687	[[32952793, 32953564], [32953839, 32954328], [32957241, 32957301]]	[[32953348, 32953564], [32953839, 32954256]]
ENST00000585522	[[32953862, 32954328], [32956090, 32956234], [32957241, 32957301]]	[[32953862, 32954256]]
ENST00000587422	[[32954137, 32954328], [32954433, 32954787], [32957241, 32957274]]	[[32954137, 32954256]]
NM_001322290	[[32946660, 32949624], [32953419, 32953564], [32953839, 32954328], [32956359, 32956596], [32957241, 32957301]]	[[32949178, 32949624], [32953419, 32953564], [32953839, 32954256]]
NM_001322286	[[32946660, 32949624], [32953419, 32953564], [32953839, 32954328], [32957241, 32957301]]	[[32949178, 32949624], [32953419, 32953564], [32953839, 32954256]]
NM_145756	[[32946660, 32948409], [32949279, 32949624], [32953419, 32953564], [32953839, 32954328], [32957241, 32957301]]	[[32948314, 32948409], [32949279, 32949624], [32953419, 32953564], [32953839, 32954256]]
NM_001322291	[[32953257, 32953564], [32953839, 32954328], [32957241, 32957301]]	[[32953348, 32953564], [32953839, 32954256]]

Promoter

Chrom	Start	End	Description
chr18	32957260	32957309	CAGE_peak_1_at_ZNF396_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr18	GH18I035239	35239977	35242474	2.06	[{'connected_gene': 'ZNF397', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 26.86}, {'connected_gene': 'ZNF396', 'score': 6.53}, {'connected_gene': 'ZNF24', 'score': 5.1}, {'connected_gene': 'PIR50065', 'score': 0.44}]
chr18	GH18I035343	35343193	35346585	2.58	[{'connected_gene': 'ZNF24', 'score': 556.0}, {'connected_gene': 'PIR42340', 'score': 550.77}, {'connected_gene': 'PIR57079', 'score': 550.77}, {'connected_gene': 'GC18P035348', 'score': 550.77}, {'connected_gene': 'ZNF396', 'score': 19.4}, {'connected_gene': 'ZNF397', 'score': 14.94}, {'connected_gene': 'MAPRE2', 'score': 9.25}, {'connected_gene': 'ZNF271P', 'score': 5.26}, {'connected_gene': 'GC18M035337', 'score': 0.44}]
chr18	GH18I035770	35770474	35770677	0.38	[{'connected_gene': 'MIR187', 'score': 10.98}, {'connected_gene': 'ZNF396', 'score': 4.58}, {'connected_gene': 'INO80C', 'score': 1.57}, {'connected_gene': 'ZNF24', 'score': 1.35}, {'connected_gene': 'ENSG00000267397', 'score': 0.23}, {'connected_gene': 'NRBF2P1', 'score': 0.19}]
chr18	GH18I035512	35512340	35516734	1.38	[{'connected_gene': 'GALNT1', 'score': 13.8}, {'connected_gene': 'ZNF396', 'score': 10.46}, {'connected_gene': 'INO80C', 'score': 6.13}]
chr18	GH18I035501	35501517	35502515	0.99	[{'connected_gene': 'GALNT1', 'score': 11.34}, {'connected_gene': 'ZNF396', 'score': 10.27}, {'connected_gene': 'INO80C', 'score': 8.75}]
chr18	GH18I035494	35493946	35494760	0.66	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'C18orf21', 'score': 10.13}, {'connected_gene': 'INO80C', 'score': 8.29}, {'connected_gene': 'ENSG00000267140', 'score': 0.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035487	35487897	35492256	0.92	[{'connected_gene': 'ZNF396', 'score': 10.38}, {'connected_gene': 'C18orf21', 'score': 10.12}, {'connected_gene': 'INO80C', 'score': 6.25}, {'connected_gene': 'ENSG00000279074', 'score': 0.44}, {'connected_gene': 'ENSG00000267140', 'score': 0.44}]
chr18	GH18I035493	35493774	35493940	0.75	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'C18orf21', 'score': 10.13}, {'connected_gene': 'INO80C', 'score': 8.29}, {'connected_gene': 'ENSG00000267140', 'score': 0.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035496	35495201	35495400	0.51	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'C18orf21', 'score': 10.13}, {'connected_gene': 'ENSG00000267140', 'score': 0.77}, {'connected_gene': 'INO80C', 'score': 0.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035809	35809651	35810965	1.2	[{'connected_gene': 'ZNF396', 'score': 6.33}, {'connected_gene': 'ZNF24', 'score': 4.04}, {'connected_gene': 'INO80C', 'score': 1.84}, {'connected_gene': 'NRBF2P1', 'score': 0.29}, {'connected_gene': 'ENSG00000267397', 'score': 0.16}]
chr18	GH18I035835	35835867	35836114	0.78	[{'connected_gene': 'ZNF396', 'score': 5.43}, {'connected_gene': 'ZNF24', 'score': 3.03}, {'connected_gene': 'INO80C', 'score': 2.68}, {'connected_gene': 'NRBF2P1', 'score': 0.44}, {'connected_gene': 'ENSG00000267397', 'score': 0.13}]
chr18	GH18I035376	35376400	35377926	1.95	[{'connected_gene': 'ZNF396', 'score': 562.37}, {'connected_gene': 'ZNF24', 'score': 8.21}, {'connected_gene': 'GC18M035375', 'score': 0.77}, {'connected_gene': 'PIR58243', 'score': 0.77}]
chr18	GH18I035825	35825976	35829667	1.23	[{'connected_gene': 'ZNF396', 'score': 6.16}, {'connected_gene': 'RPRD1A', 'score': 4.76}, {'connected_gene': 'C18orf21', 'score': 4.39}, {'connected_gene': 'ZNF24', 'score': 3.65}, {'connected_gene': 'INO80C', 'score': 2.4}, {'connected_gene': 'NRBF2P1', 'score': 0.39}, {'connected_gene': 'ENSG00000267397', 'score': 0.14}]
chr18	GH18I035506	35506780	35509306	0.91	[{'connected_gene': 'ZNF396', 'score': 10.46}, {'connected_gene': 'INO80C', 'score': 7.25}, {'connected_gene': 'GALNT1', 'score': 0.19}]
chr18	GH18I035507	35506197	35506346	0.82	[{'connected_gene': 'ZNF396', 'score': 10.47}, {'connected_gene': 'INO80C', 'score': 7.53}, {'connected_gene': 'GALNT1', 'score': 0.19}]
chr18	GH18I035511	35511657	35511766	0.67	[{'connected_gene': 'ZNF396', 'score': 10.46}, {'connected_gene': 'INO80C', 'score': 0.39}, {'connected_gene': 'GALNT1', 'score': 0.2}]
chr18	GH18I035132	35131997	35132914	0.74	[{'connected_gene': 'ZNF396', 'score': 10.38}, {'connected_gene': 'MAPRE2', 'score': 4.88}, {'connected_gene': 'ENSG00000274400', 'score': 0.39}, {'connected_gene': 'ENSG00000280096', 'score': 0.23}]
chr18	GH18I035170	35170560	35172457	0.85	[{'connected_gene': 'ZNF396', 'score': 10.77}, {'connected_gene': 'MAPRE2', 'score': 10.28}, {'connected_gene': 'ENSG00000274400', 'score': 0.31}, {'connected_gene': 'PIR47170', 'score': 0.23}]
chr18	GH18I035173	35173769	35174721	0.82	[{'connected_gene': 'ZNF396', 'score': 10.77}, {'connected_gene': 'MAPRE2', 'score': 10.28}, {'connected_gene': 'ENSG00000274400', 'score': 0.31}, {'connected_gene': 'PIR47170', 'score': 0.23}]
chr18	GH18I035131	35131777	35131926	0.51	[{'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'ENSG00000274400', 'score': 0.39}, {'connected_gene': 'ENSG00000280096', 'score': 0.25}, {'connected_gene': 'MAPRE2', 'score': 0.1}]
chr18	GH18I035230	35230957	35231400	1.06	[{'connected_gene': 'ZNF396', 'score': 10.65}, {'connected_gene': 'ZSCAN30', 'score': 4.26}, {'connected_gene': 'ZNF397', 'score': 0.44}, {'connected_gene': 'PIR47170', 'score': 0.44}]
chr18	GH18I035495	35495482	35498608	2.35	[{'connected_gene': 'INO80C', 'score': 558.31}, {'connected_gene': 'ENSG00000267140', 'score': 550.77}, {'connected_gene': 'ENSG00000268573', 'score': 87.13}, {'connected_gene': 'ZNF397', 'score': 80.97}, {'connected_gene': 'ZSCAN30', 'score': 53.0}, {'connected_gene': 'ELP2', 'score': 48.88}, {'connected_gene': 'RPRD1A', 'score': 29.99}, {'connected_gene': 'C18orf21', 'score': 20.32}, {'connected_gene': 'ZNF271P', 'score': 11.06}, {'connected_gene': 'ZNF396', 'score': 10.37}, {'connected_gene': 'ENSG00000279074', 'score': 0.39}]
chr18	GH18I035475	35475952	35482999	1.57	[{'connected_gene': 'INO80C', 'score': 5.93}, {'connected_gene': 'ZNF396', 'score': 4.5}, {'connected_gene': 'MAPRE2', 'score': 3.07}, {'connected_gene': 'ZNF24', 'score': 2.77}, {'connected_gene': 'ENSG00000279074', 'score': 0.77}, {'connected_gene': 'ENSG00000267583', 'score': 0.39}, {'connected_gene': 'ENSG00000267140', 'score': 0.37}]
chr18	GH18I034976	34976052	34979998	2.59	[{'connected_gene': 'MAPRE2', 'score': 567.27}, {'connected_gene': 'ZNF397', 'score': 11.56}, {'connected_gene': 'ZNF396', 'score': 3.34}, {'connected_gene': 'ZNF24', 'score': 2.24}, {'connected_gene': 'ENSG00000280096', 'score': 0.15}]
chr18	GH18I035028	35028519	35032896	1.37	[{'connected_gene': 'MAPRE2', 'score': 8.83}, {'connected_gene': 'ZNF396', 'score': 4.44}, {'connected_gene': 'ZNF24', 'score': 1.16}, {'connected_gene': 'ENSG00000280096', 'score': 0.23}]
chr18	GH18I035122	35122605	35123818	0.74	[{'connected_gene': 'MAPRE2', 'score': 10.36}, {'connected_gene': 'ZNF396', 'score': 10.22}, {'connected_gene': 'ENSG00000274400', 'score': 0.34}, {'connected_gene': 'ENSG00000280096', 'score': 0.26}]
chr18	GH18I035010	35010871	35011625	0.2	[{'connected_gene': 'MAPRE2', 'score': 10.99}, {'connected_gene': 'ZNF396', 'score': 10.44}, {'connected_gene': 'ENSG00000280096', 'score': 0.19}]
chr18	GH18I035407	35407583	35410398	1.25	[{'connected_gene': 'LOC105372063', 'score': 550.77}, {'connected_gene': 'ZNF396', 'score': 12.01}, {'connected_gene': 'GALNT1', 'score': 11.43}, {'connected_gene': 'RPL7AP67', 'score': 0.34}]
chr18	GH18I035281	35281780	35283283	0.46	[{'connected_gene': 'PIR57805', 'score': 550.77}, {'connected_gene': 'ZNF24', 'score': 6.99}, {'connected_gene': 'ZNF396', 'score': 6.24}, {'connected_gene': 'MAPRE2', 'score': 4.73}, {'connected_gene': 'ZSCAN30', 'score': 0.44}, {'connected_gene': 'ENSG00000268573', 'score': 0.44}, {'connected_gene': 'ENSG00000274184', 'score': 0.39}]
chr18	GH18I035246	35246649	35248152	0.46	[{'connected_gene': 'PIR50065', 'score': 550.77}, {'connected_gene': 'ZNF24', 'score': 6.85}, {'connected_gene': 'MAPRE2', 'score': 6.52}, {'connected_gene': 'ZNF396', 'score': 6.28}, {'connected_gene': 'ZNF397', 'score': 0.44}, {'connected_gene': 'PIR48276', 'score': 0.44}]