PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr12	65672321	65672354	CAGE_peak_2_at_MSRB3_5end
chr12	65672443	65672553	CAGE_peak_1_at_MSRB3_5end
chr12	65672702	65672744	CAGE_peak_3_at_MSRB3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I065763	65763612	65766580	0.43	[{'connected_gene': 'HMGA2', 'score': 11.17}, {'connected_gene': 'RPSAP52', 'score': 11.16}, {'connected_gene': 'MSRB3', 'score': 10.08}, {'connected_gene': 'ENSG00000250280', 'score': 10.08}, {'connected_gene': 'GC12P065791', 'score': 0.31}, {'connected_gene': 'GC12M065700', 'score': 0.21}]
chr12	GH12I065277	65277800	65281072	1.91	[{'connected_gene': 'MSRB3', 'score': 550.77}, {'connected_gene': 'LEMD3', 'score': 13.65}, {'connected_gene': 'ENSG00000250280', 'score': 0.77}, {'connected_gene': 'GC12P065270', 'score': 0.44}]
chr12	GH12I065300	65300901	65301050	0.67	[{'connected_gene': 'MSRB3', 'score': 11.01}, {'connected_gene': 'ENSG00000250280', 'score': 0.37}, {'connected_gene': 'GC12P065325', 'score': 0.34}]
chr12	GH12I065284	65284973	65285032	0.5	[{'connected_gene': 'MSRB3', 'score': 550.44}, {'connected_gene': 'ENSG00000250280', 'score': 0.77}, {'connected_gene': 'GC12P065270', 'score': 0.39}, {'connected_gene': 'GC12P065325', 'score': 0.26}]
chr12	GH12I065168	65168527	65172401	2.3	[{'connected_gene': 'LEMD3', 'score': 570.42}, {'connected_gene': 'ENSG00000276853', 'score': 550.77}, {'connected_gene': 'ENSG00000250280', 'score': 21.17}, {'connected_gene': 'TBK1', 'score': 20.73}, {'connected_gene': 'MSRB3', 'score': 10.89}]
chr12	GH12I065194	65194868	65199470	0.54	[{'connected_gene': 'LEMD3', 'score': 21.24}, {'connected_gene': 'ENSG00000250280', 'score': 11.27}, {'connected_gene': 'MSRB3', 'score': 11.27}, {'connected_gene': 'LLPH', 'score': 4.71}, {'connected_gene': 'GC12P065213', 'score': 0.37}, {'connected_gene': 'ENSG00000276853', 'score': 0.31}]
chr12	GH12I065322	65322943	65323625	0.31	[{'connected_gene': 'LEMD3', 'score': 14.4}, {'connected_gene': 'GC12P065325', 'score': 0.77}, {'connected_gene': 'ENSG00000250280', 'score': 0.26}, {'connected_gene': 'MSRB3', 'score': 0.26}]
chr12	GH12I065463	65463136	65465677	0.63	[{'connected_gene': 'LEMD3', 'score': 11.94}, {'connected_gene': 'LOC105369809', 'score': 0.44}, {'connected_gene': 'KRT18P60', 'score': 0.26}, {'connected_gene': 'MSRB3', 'score': 0.09}]
chr12	GH12I065429	65429311	65432979	0.69	[{'connected_gene': 'LEMD3', 'score': 4.18}, {'connected_gene': 'KRT18P60', 'score': 0.39}, {'connected_gene': 'LOC105369809', 'score': 0.26}, {'connected_gene': 'MSRB3', 'score': 0.1}]
chr12	GH12I065474	65474153	65475472	0.43	[{'connected_gene': 'LOC105369809', 'score': 550.77}, {'connected_gene': 'GC12M065495', 'score': 0.34}, {'connected_gene': 'LOC105369187', 'score': 0.1}, {'connected_gene': 'LOC100507065', 'score': 0.1}, {'connected_gene': 'MSRB3', 'score': 0.08}]
chr12	GH12I065448	65448822	65450071	0.46	[{'connected_gene': 'LOC105369809', 'score': 0.34}, {'connected_gene': 'KRT18P60', 'score': 0.31}, {'connected_gene': 'MSRB3', 'score': 0.09}]
chr12	GH12I065456	65456130	65456996	0.2	[{'connected_gene': 'LOC105369809', 'score': 0.37}, {'connected_gene': 'KRT18P60', 'score': 0.28}, {'connected_gene': 'MSRB3', 'score': 0.1}]
chr12	GH12I065459	65459620	65460633	0.2	[{'connected_gene': 'LOC105369809', 'score': 0.39}, {'connected_gene': 'KRT18P60', 'score': 0.26}, {'connected_gene': 'MSRB3', 'score': 0.09}]
chr12	GH12I065471	65471611	65473329	0.31	[{'connected_gene': 'LOC105369809', 'score': 550.77}, {'connected_gene': 'KRT18P60', 'score': 0.23}, {'connected_gene': 'LOC105369187', 'score': 0.1}, {'connected_gene': 'LOC100507065', 'score': 0.1}, {'connected_gene': 'MSRB3', 'score': 0.08}]
chr12	GH12I065410	65410401	65410601	0.6	[{'connected_gene': 'KRT18P60', 'score': 0.44}, {'connected_gene': 'GC12P065388', 'score': 0.34}, {'connected_gene': 'MSRB3', 'score': 0.12}]
chr12	GH12I065425	65425770	65426870	0.2	[{'connected_gene': 'KRT18P60', 'score': 0.44}, {'connected_gene': 'LOC105369809', 'score': 0.25}, {'connected_gene': 'MSRB3', 'score': 0.11}]
chr12	GH12I065305	65305756	65309263	0.97	[{'connected_gene': 'ENSG00000250280', 'score': 10.99}, {'connected_gene': 'MSRB3', 'score': 10.99}, {'connected_gene': 'HMGA2', 'score': 10.89}, {'connected_gene': 'RPSAP52', 'score': 10.89}, {'connected_gene': 'LEMD3', 'score': 9.03}, {'connected_gene': 'GC12P065325', 'score': 0.37}]
chr12	GH12I066052	66052997	66053371	0.55	[{'connected_gene': 'ENSG00000250280', 'score': 10.15}, {'connected_gene': 'MSRB3', 'score': 10.15}, {'connected_gene': 'HMGA2', 'score': 9.81}, {'connected_gene': 'RPSAP52', 'score': 9.81}, {'connected_gene': 'LLPH-AS1', 'score': 4.4}, {'connected_gene': 'RNA5SP362', 'score': 0.39}, {'connected_gene': 'RPL21P18', 'score': 0.37}]
chr12	GH12I065232	65232621	65232770	0.46	[{'connected_gene': 'ENSG00000250280', 'score': 11.12}, {'connected_gene': 'MSRB3', 'score': 11.12}, {'connected_gene': 'RNU6-166P', 'score': 9.97}, {'connected_gene': 'GC12P065235', 'score': 0.77}, {'connected_gene': 'GC12P065213', 'score': 0.37}, {'connected_gene': 'LEMD3', 'score': 0.21}]
chr12	GH12I065334	65334074	65336413	1.07	[{'connected_gene': 'GC12P065338', 'score': 0.77}, {'connected_gene': 'GC12P065325', 'score': 0.44}, {'connected_gene': 'MSRB3', 'score': 0.22}]
chr12	GH12I065324	65324095	65324318	0.4	[{'connected_gene': 'GC12P065325', 'score': 550.77}, {'connected_gene': 'ENSG00000250280', 'score': 0.26}, {'connected_gene': 'MSRB3', 'score': 0.25}]
chr12	GH12I065313	65313861	65314010	0.56	[{'connected_gene': 'GC12P065325', 'score': 0.39}, {'connected_gene': 'ENSG00000250280', 'score': 0.29}, {'connected_gene': 'MSRB3', 'score': 0.28}]
chr12	GH12I065326	65326723	65328570	1.14	[{'connected_gene': 'GC12P065325', 'score': 550.77}, {'connected_gene': 'LEMD3', 'score': 41.87}, {'connected_gene': 'LOC100420899', 'score': 35.33}, {'connected_gene': 'LINC02389', 'score': 9.71}, {'connected_gene': 'GC12P065338', 'score': 0.39}, {'connected_gene': 'MSRB3', 'score': 0.25}]
chr12	GH12I065487	65487000	65489659	0.43	[{'connected_gene': 'GC12M065495', 'score': 0.44}, {'connected_gene': 'LOC105369809', 'score': 0.39}, {'connected_gene': 'LOC105369187', 'score': 0.1}, {'connected_gene': 'LOC100507065', 'score': 0.1}, {'connected_gene': 'MSRB3', 'score': 0.08}]
chr12	GH12I065392	65392601	65392750	0.2	[{'connected_gene': 'GC12P065388', 'score': 0.77}, {'connected_gene': 'KRT18P60', 'score': 0.31}, {'connected_gene': 'MSRB3', 'score': 0.14}]
chr12	GH12I065391	65391536	65392583	0.2	[{'connected_gene': 'GC12P065388', 'score': 0.77}, {'connected_gene': 'KRT18P60', 'score': 0.31}, {'connected_gene': 'MSRB3', 'score': 0.14}]
chr12	GH12I066047	66047144	66051154	1.16	[{'connected_gene': 'ENSG00000256083', 'score': 10.68}, {'connected_gene': 'LOC100129940', 'score': 10.33}, {'connected_gene': 'MSRB3', 'score': 10.15}, {'connected_gene': 'ENSG00000250280', 'score': 10.15}, {'connected_gene': 'HMGA2', 'score': 9.81}, {'connected_gene': 'RPSAP52', 'score': 9.81}, {'connected_gene': 'LLPH-AS1', 'score': 4.39}, {'connected_gene': 'RPL21P18', 'score': 0.39}, {'connected_gene': 'RNA5SP362', 'score': 0.37}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000355192	[[65672422, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65860686]]	[[65672548, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]
ENST00000308259	[[65672422, 65672645], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65860687]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]
ENST00000541897	[[65672448, 65672645], [65702308, 65702435], [65762777, 65762806], [65847507, 65847605], [65856934, 65856972]]	[[65672548, 65672645], [65702308, 65702346]]
ENST00000540804	[[65672511, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65848041]]	[[65672548, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847677]]
ENST00000535664	[[65672521, 65672645], [65700642, 65700806], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857169]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]
ENST00000541189	[[65672523, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65881783, 65881875]]	[[65672523, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65881783, 65881870]]
ENST00000538045	[[65672705, 65672829], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847567]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847567]]
ENST00000535239	[[65672766, 65672851], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857038]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857038]]
ENST00000446731	[[65720654, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65881783, 65882024]]	[[65720654, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65881783, 65881870]]
ENST00000535143	[[65737913, 65738015], [65762777, 65762806], [65847507, 65847605], [65856934, 65857124]]	None
ENST00000538725	[[65672483, 65672645], [65702308, 65702435], [65709812, 65710097]]	None
NM_198080	[[65672422, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65860687]]	[[65672548, 65672645], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]
NM_001031679	[[65672422, 65672645], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65860687]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]
NM_001193460	[[65672422, 65672645], [65700642, 65700806], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65860687]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]
NM_001193461	[[65672766, 65672851], [65702308, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65860687]]	[[65702359, 65702435], [65720605, 65720714], [65722305, 65722383], [65762777, 65762806], [65847507, 65847605], [65856934, 65857102]]