PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368599	[[116832808, 116833399], [116836762, 116845955]]	[[116832859, 116833399], [116836762, 116837152]]

Promoter

Chrom	Start	End	Description
chr6	116832767	116832787	CAGE_peak_3_at_FAM26E_5end
chr6	116832789	116832811	CAGE_peak_2_at_FAM26E_5end
chr6	116832823	116832853	CAGE_peak_1_at_FAM26E_5end
chr6	116833158	116833185	CAGE_peak_4_at_FAM26E_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I116475	116475001	116476834	1	[{'connected_gene': 'CALHM6', 'score': 14.96}, {'connected_gene': 'DSE', 'score': 10.91}, {'connected_gene': 'CALHM5', 'score': 7.32}, {'connected_gene': 'ENSG00000244158', 'score': 0.39}, {'connected_gene': 'ENSG00000234117', 'score': 0.37}]
chr6	GH06I116396	116396707	116399776	1.06	[{'connected_gene': 'CALHM6', 'score': 17.88}, {'connected_gene': 'CALHM4', 'score': 11.7}, {'connected_gene': 'CBX3P9', 'score': 11.62}, {'connected_gene': 'KRT18P22', 'score': 11.61}, {'connected_gene': 'ENSG00000244158', 'score': 11.61}, {'connected_gene': 'ENSG00000234117', 'score': 10.36}, {'connected_gene': 'TRAPPC3L', 'score': 10.22}, {'connected_gene': 'DSE', 'score': 7.2}, {'connected_gene': 'CALHM5', 'score': 4.19}, {'connected_gene': 'PIR33476', 'score': 0.29}, {'connected_gene': 'PIR34878', 'score': 0.28}]
chr6	GH06I116501	116501201	116501400	0.97	[{'connected_gene': 'RSPH4A', 'score': 14.54}, {'connected_gene': 'CALHM6', 'score': 13.38}, {'connected_gene': 'CALHM4', 'score': 10.69}, {'connected_gene': 'ENSG00000234117', 'score': 0.44}, {'connected_gene': 'CALHM5', 'score': 0.39}, {'connected_gene': 'TRAPPC3L', 'score': 0.26}]
chr6	GH06I116555	116555578	116559225	0.99	[{'connected_gene': 'RSPH4A', 'score': 25.88}, {'connected_gene': 'KPNA5', 'score': 20.55}, {'connected_gene': 'CALHM6', 'score': 19.4}, {'connected_gene': 'CALHM4', 'score': 11.5}, {'connected_gene': 'ENSG00000244158', 'score': 10.28}, {'connected_gene': 'KRT18P22', 'score': 10.28}, {'connected_gene': 'CBX3P9', 'score': 10.27}, {'connected_gene': 'ENSG00000234117', 'score': 9.76}, {'connected_gene': 'CALHM5', 'score': 9.21}, {'connected_gene': 'TRAPPC3L', 'score': 8.04}, {'connected_gene': 'RWDD1', 'score': 0.39}]
chr6	GH06I116384	116384602	116394310	1.61	[{'connected_gene': 'DSE', 'score': 27.88}, {'connected_gene': 'CALHM6', 'score': 24.21}, {'connected_gene': 'CALHM4', 'score': 11.7}, {'connected_gene': 'CBX3P9', 'score': 11.66}, {'connected_gene': 'KRT18P22', 'score': 11.65}, {'connected_gene': 'ENSG00000244158', 'score': 11.64}, {'connected_gene': 'ENSG00000234117', 'score': 11.05}, {'connected_gene': 'TRAPPC3L', 'score': 10.92}, {'connected_gene': 'ENSG00000240050', 'score': 6.28}, {'connected_gene': 'TSPYL1', 'score': 5.83}, {'connected_gene': 'CALHM5', 'score': 4.03}, {'connected_gene': 'ZUFSP', 'score': 2.59}, {'connected_gene': 'PIR33476', 'score': 0.34}, {'connected_gene': 'PIR34878', 'score': 0.25}]
chr6	GH06I116564	116564801	116565600	0.31	[{'connected_gene': 'CALHM5', 'score': 11.7}, {'connected_gene': 'RSPH4A', 'score': 11.58}, {'connected_gene': 'CALHM4', 'score': 11.29}, {'connected_gene': 'ENSG00000234117', 'score': 10.46}, {'connected_gene': 'RWDD1', 'score': 0.44}, {'connected_gene': 'TRAPPC3L', 'score': 0.37}]
chr6	GH06I116510	116510958	116513533	1.87	[{'connected_gene': 'CALHM5', 'score': 563.08}, {'connected_gene': 'TRAPPC3L', 'score': 10.59}, {'connected_gene': 'CALHM6', 'score': 8.81}, {'connected_gene': 'RWDD1', 'score': 5.65}, {'connected_gene': 'CALHM4', 'score': 0.37}]
chr6	GH06I116665	116665596	116669407	2.25	[{'connected_gene': 'ZUFSP', 'score': 563.24}, {'connected_gene': 'CALHM5', 'score': 7.39}, {'connected_gene': 'KPNA5', 'score': 6.8}, {'connected_gene': 'RWDD1', 'score': 6.3}, {'connected_gene': 'DSE', 'score': 1.12}, {'connected_gene': 'GC06P116597', 'score': 0.2}]
chr6	GH06I116528	116528127	116529894	1.29	[{'connected_gene': 'CALHM4', 'score': 550.77}, {'connected_gene': 'RSPH4A', 'score': 15.0}, {'connected_gene': 'ENSG00000237021', 'score': 12.01}, {'connected_gene': 'CALHM6', 'score': 9.24}, {'connected_gene': 'CALHM5', 'score': 7.4}, {'connected_gene': 'TRAPPC3L', 'score': 0.37}]
chr6	GH06I116491	116491987	116493130	1.06	[{'connected_gene': 'ENSG00000234117', 'score': 550.77}, {'connected_gene': 'DSE', 'score': 10.95}, {'connected_gene': 'CALHM5', 'score': 0.37}]
chr6	GH06I116513	116513578	116513727	0.38	[{'connected_gene': 'ENSG00000234117', 'score': 11.62}, {'connected_gene': 'TRAPPC3L', 'score': 10.59}, {'connected_gene': 'CALHM5', 'score': 0.77}, {'connected_gene': 'CALHM4', 'score': 0.37}]