PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000294543	[[20008705, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072024, 20072144], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107259], [20113518, 20113610], [20124629, 20124708], [20126347, 20126410]]	[[20009532, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072024, 20072144], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107251]]
ENST00000375127	[[20008732, 20009207], [20009780, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072024, 20072144], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107259], [20113518, 20113610], [20125666, 20125837]]	[[20009121, 20009207], [20009780, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072024, 20072144], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107251]]
ENST00000489814	[[20008734, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20064714, 20064912]]	None
ENST00000375122	[[20008753, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107259], [20113518, 20113610], [20124629, 20124708], [20126347, 20126410]]	[[20009532, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107251]]
ENST00000494342	[[20020984, 20021044], [20027260, 20027703]]	None
ENST00000489135	[[20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107257]]	None
ENST00000496528	[[20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107259], [20113518, 20113610], [20126347, 20126438]]	None
ENST00000462171	[[20076573, 20076865], [20082126, 20082259], [20097034, 20097062], [20097800, 20097920]]	None
ENST00000488449	[[20097838, 20097975], [20107072, 20107259], [20113518, 20113610], [20124563, 20124708], [20126347, 20126433]]	None
NM_181719	[[20008705, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072024, 20072144], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107259], [20113518, 20113610], [20124629, 20124708], [20126347, 20126410]]	[[20009532, 20009937], [20020926, 20021044], [20027260, 20027378], [20063864, 20063949], [20066316, 20066453], [20067269, 20067434], [20072024, 20072144], [20072948, 20073092], [20073655, 20073753], [20082126, 20082259], [20097034, 20097062], [20097800, 20097975], [20107072, 20107251]]

Promoter

Chrom	Start	End	Description
chr1	20113550	20113568	CAGE_peak_5_at_TMCO4_5end
chr1	20113572	20113583	CAGE_peak_11_at_TMCO4_5end
chr1	20126365	20126414	CAGE_peak_1_at_TMCO4_5end
chr1	20126548	20126564	CAGE_peak_6_at_TMCO4_5end
chr1	20126808	20126822	CAGE_peak_13_at_TMCO4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I019474	19474642	19479855	1.53	[{'connected_gene': 'AKR7A2', 'score': 7.06}, {'connected_gene': 'CAPZB', 'score': 5.06}, {'connected_gene': 'PLA2G2E', 'score': 5.04}, {'connected_gene': 'UBR4', 'score': 2.25}, {'connected_gene': 'TMCO4', 'score': 1.14}, {'connected_gene': 'PIR41915', 'score': 0.39}]
chr1	GH01I019866	19866288	19867665	0.69	[{'connected_gene': 'RNF186', 'score': 11.09}, {'connected_gene': 'ENSG00000235434', 'score': 11.09}, {'connected_gene': 'TMCO4', 'score': 10.56}, {'connected_gene': 'OTUD3', 'score': 5.99}, {'connected_gene': 'PIR53184', 'score': 0.39}, {'connected_gene': 'LOC105376823', 'score': 0.34}, {'connected_gene': 'GC01M019829', 'score': 0.28}]
chr1	GH01I019786	19786528	19787577	0.6	[{'connected_gene': 'RNF186', 'score': 11.15}, {'connected_gene': 'ENSG00000235434', 'score': 11.15}, {'connected_gene': 'TMCO4', 'score': 0.39}, {'connected_gene': 'GC01P019759', 'score': 0.31}]
chr1	GH01I019812	19812396	19817724	1.75	[{'connected_gene': 'RNF186', 'score': 550.77}, {'connected_gene': 'ENSG00000235434', 'score': 550.77}, {'connected_gene': 'OTUD3', 'score': 18.43}, {'connected_gene': 'EMC1', 'score': 10.88}, {'connected_gene': 'TMCO4', 'score': 7.93}]
chr1	GH01I019859	19859613	19862522	0.83	[{'connected_gene': 'HP1BP3', 'score': 18.1}, {'connected_gene': 'OTUD3', 'score': 12.06}, {'connected_gene': 'RNF186', 'score': 11.11}, {'connected_gene': 'ENSG00000235434', 'score': 11.11}, {'connected_gene': 'EMC1', 'score': 10.92}, {'connected_gene': 'TMCO4', 'score': 10.56}, {'connected_gene': 'PIR53184', 'score': 0.37}, {'connected_gene': 'LOC105376823', 'score': 0.31}, {'connected_gene': 'GC01M019829', 'score': 0.29}]
chr1	GH01I019715	19715401	19716001	1.03	[{'connected_gene': 'HTR6', 'score': 11.11}, {'connected_gene': 'TMCO4', 'score': 10.06}, {'connected_gene': 'PIR33395', 'score': 0.29}, {'connected_gene': 'GC01P019759', 'score': 0.26}]
chr1	GH01I019687	19687324	19689919	0.59	[{'connected_gene': 'HTR6', 'score': 36.08}, {'connected_gene': 'PIR33395', 'score': 0.44}, {'connected_gene': 'GC01P019680', 'score': 0.44}, {'connected_gene': 'GC01P019759', 'score': 0.19}, {'connected_gene': 'TMCO4', 'score': 0.14}]
chr1	GH01I019689	19689948	19690097	0.46	[{'connected_gene': 'HTR6', 'score': 12.49}, {'connected_gene': 'PIR33395', 'score': 0.44}, {'connected_gene': 'GC01P019680', 'score': 0.44}, {'connected_gene': 'GC01P019759', 'score': 0.2}, {'connected_gene': 'TMCO4', 'score': 0.14}]
chr1	GH01I019798	19798085	19801362	1.94	[{'connected_gene': 'TMCO4', 'score': 560.68}, {'connected_gene': 'AKR7A2', 'score': 5.44}, {'connected_gene': 'GC01P019759', 'score': 0.28}]
chr1	GH01I019600	19600317	19600478	0.7	[{'connected_gene': 'TMCO4', 'score': 1.43}, {'connected_gene': 'MINOS1', 'score': 0.77}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.77}, {'connected_gene': 'RPS14P3', 'score': 0.44}]
chr1	GH01I019764	19764505	19766790	1.3	[{'connected_gene': 'TMCO4', 'score': 20.52}, {'connected_gene': 'AKR7A3', 'score': 11.34}, {'connected_gene': 'RNF186', 'score': 10.86}, {'connected_gene': 'ENSG00000235434', 'score': 10.86}, {'connected_gene': 'PLA2G2A', 'score': 1.33}, {'connected_gene': 'GC01P019759', 'score': 0.44}]
chr1	GH01I019737	19737395	19740496	0.52	[{'connected_gene': 'TMCO4', 'score': 15.1}, {'connected_gene': 'GC01P019759', 'score': 0.34}, {'connected_gene': 'PIR33395', 'score': 0.22}]
chr1	GH01I019784	19784573	19784865	0.24	[{'connected_gene': 'TMCO4', 'score': 0.37}, {'connected_gene': 'GC01P019759', 'score': 0.34}]
chr1	GH01I019804	19804332	19805699	0.2	[{'connected_gene': 'TMCO4', 'score': 9.93}, {'connected_gene': 'ENSG00000235434', 'score': 0.44}]
chr1	GH01I019809	19809730	19811959	0.57	[{'connected_gene': 'TMCO4', 'score': 9.51}, {'connected_gene': 'ENSG00000235434', 'score': 0.77}]
chr1	GH01I019863	19863029	19864750	0.75	[{'connected_gene': 'OTUD3', 'score': 23.59}, {'connected_gene': 'EMC1', 'score': 11.35}, {'connected_gene': 'RNF186', 'score': 11.11}, {'connected_gene': 'ENSG00000235434', 'score': 11.11}, {'connected_gene': 'TMCO4', 'score': 10.56}, {'connected_gene': 'PIR53184', 'score': 0.39}, {'connected_gene': 'LOC105376823', 'score': 0.31}, {'connected_gene': 'GC01M019829', 'score': 0.29}]
chr1	GH01I019682	19682368	19682517	0.31	[{'connected_gene': 'PIR33395', 'score': 550.77}, {'connected_gene': 'GC01P019680', 'score': 550.77}, {'connected_gene': 'HTR6', 'score': 8.06}, {'connected_gene': 'GC01P019679', 'score': 0.77}, {'connected_gene': 'TMCO4', 'score': 0.13}]
chr1	GH01I019757	19757389	19760186	0.99	[{'connected_gene': 'GC01P019759', 'score': 550.77}, {'connected_gene': 'TMCO4', 'score': 18.15}, {'connected_gene': 'RNF186', 'score': 10.85}, {'connected_gene': 'ENSG00000235434', 'score': 10.85}, {'connected_gene': 'PIR33395', 'score': 0.18}]
chr1	GH01I019704	19704234	19704934	0.9	[{'connected_gene': 'PIR33395', 'score': 0.34}, {'connected_gene': 'GC01P019680', 'score': 0.34}, {'connected_gene': 'GC01P019759', 'score': 0.22}, {'connected_gene': 'TMCO4', 'score': 0.15}]
chr1	GH01I019734	19734208	19736862	0.96	[{'connected_gene': 'GC01P019759', 'score': 0.34}, {'connected_gene': 'PIR33395', 'score': 0.23}, {'connected_gene': 'TMCO4', 'score': 0.21}]
chr1	GH01I019725	19725648	19725797	0.31	[{'connected_gene': 'GC01P019759', 'score': 0.29}, {'connected_gene': 'PIR33395', 'score': 0.26}, {'connected_gene': 'TMCO4', 'score': 0.19}]
chr1	GH01I019749	19749590	19752820	1.07	[{'connected_gene': 'GC01P019759', 'score': 0.44}, {'connected_gene': 'TMCO4', 'score': 0.25}, {'connected_gene': 'PIR33395', 'score': 0.2}]
chr1	GH01I019753	19753412	19756032	0.88	[{'connected_gene': 'GC01P019759', 'score': 0.44}, {'connected_gene': 'TMCO4', 'score': 0.25}, {'connected_gene': 'PIR33395', 'score': 0.19}]
chr1	GH01I019742	19742939	19746725	0.54	[{'connected_gene': 'GC01P019759', 'score': 0.37}, {'connected_gene': 'TMCO4', 'score': 0.22}, {'connected_gene': 'PIR33395', 'score': 0.21}]
chr1	GH01I019747	19747908	19748057	0.4	[{'connected_gene': 'GC01P019759', 'score': 0.39}, {'connected_gene': 'TMCO4', 'score': 0.23}, {'connected_gene': 'PIR33395', 'score': 0.21}]