PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264318	[[46920916, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995355, 46996424]]	[[46930241, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995355, 46995441]]
ENST00000508560	[[46930143, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995423, 46995522]]	[[46994870, 46994963], [46995423, 46995441]]
ENST00000511523	[[46930143, 46930772], [46966986, 46967246], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995423, 46995522]]	[[46994870, 46994963], [46995423, 46995441]]
ENST00000502874	[[46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46995355, 46995557]]	[[46981090, 46981115], [46995355, 46995441]]
ENST00000509316	[[46994686, 46994963], [46995355, 46995565]]	None
NM_001204266	[[46920916, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995423, 46995522]]	[[46930241, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995423, 46995452]]
NM_001204267	[[46920916, 46930772], [46966986, 46967246], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995423, 46995522]]	[[46930241, 46930772], [46966986, 46967246], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995423, 46995452]]
NM_000809	[[46920916, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995355, 46996424]]	[[46930241, 46930772], [46966986, 46967246], [46973099, 46973252], [46976248, 46976392], [46979077, 46979160], [46979426, 46979647], [46981047, 46981115], [46994844, 46994963], [46995355, 46995441]]

Promoter

Chrom	Start	End	Description
chr4	46995468	46995482	CAGE_peak_3_at_GABRA4_5end
chr4	46995484	46995588	CAGE_peak_1_at_GABRA4_5end
chr4	46995590	46995607	CAGE_peak_2_at_GABRA4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I047033	47031296	47031355	0.68	[{'connected_gene': 'GABRB1', 'score': 550.28}, {'connected_gene': 'GABRA4', 'score': 0.28}, {'connected_gene': 'LOC105374442', 'score': 0.21}]
chr4	GH04I046720	46720987	46721178	0.22	[{'connected_gene': 'GABRA4', 'score': 1.63}, {'connected_gene': 'RAC1P2', 'score': 0.77}, {'connected_gene': 'PIR47031', 'score': 0.18}]
chr4	GH04I046975	46975601	46976600	0.46	[{'connected_gene': 'GABRA4', 'score': 0.37}, {'connected_gene': 'GABRB1', 'score': 0.37}, {'connected_gene': 'GC04M046919', 'score': 0.23}]
chr4	GH04I046993	46993522	46993581	0.82	[{'connected_gene': 'GABRA4', 'score': 550.77}, {'connected_gene': 'GABRB1', 'score': 550.77}, {'connected_gene': 'GC04M046919', 'score': 0.19}]
chr4	GH04I047641	47641352	47644141	0.73	[{'connected_gene': 'GABRA4', 'score': 7.38}, {'connected_gene': 'LOC105374443', 'score': 0.77}, {'connected_gene': 'MIR8053', 'score': 0.44}, {'connected_gene': 'CORIN', 'score': 0.08}]
chr4	GH04I047011	47011004	47011153	0.69	[{'connected_gene': 'COX7B2', 'score': 7.78}, {'connected_gene': 'GABRA4', 'score': 0.37}, {'connected_gene': 'GABRB1', 'score': 0.37}, {'connected_gene': 'LOC105374442', 'score': 0.17}]
chr4	GH04I047071	47071127	47072682	0.57	[{'connected_gene': 'LOC105374442', 'score': 0.34}, {'connected_gene': 'GABRA4', 'score': 0.18}, {'connected_gene': 'GABRB1', 'score': 0.18}]
chr4	GH04I047031	47031400	47032201	0.68	[{'connected_gene': 'ENSG00000260918', 'score': 5.0}, {'connected_gene': 'GABRA4', 'score': 0.28}, {'connected_gene': 'GABRB1', 'score': 0.28}, {'connected_gene': 'LOC105374442', 'score': 0.21}]
chr4	GH04I047032	47032600	47032893	1.19	[{'connected_gene': 'ENSG00000260918', 'score': 4.92}, {'connected_gene': 'GABRA4', 'score': 0.28}, {'connected_gene': 'GABRB1', 'score': 0.28}, {'connected_gene': 'LOC105374442', 'score': 0.21}]