PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376504	[[23481255, 23482243], [23482632, 23483181]]	[[23481459, 23482243], [23482632, 23482835]]
NM_178161	[[23481459, 23482243], [23482632, 23483181]]	[[23481459, 23482243], [23482632, 23482835]]

Promoter

Chrom	Start	End	Description
chr10	23481233	23481249	CAGE_peak_1_at_PTF1A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I023194	23194517	23195632	0.46	[{'connected_gene': 'BMI1', 'score': 5.32}, {'connected_gene': 'PTF1A', 'score': 0.77}, {'connected_gene': 'ENSG00000227537', 'score': 0.21}]
chr10	GH10I023202	23202896	23203192	0.51	[{'connected_gene': 'PTF1A', 'score': 0.39}, {'connected_gene': 'ENSG00000227537', 'score': 0.22}, {'connected_gene': 'C10orf67', 'score': 0.11}]
chr10	GH10I023191	23191244	23192226	0.54	[{'connected_gene': 'PTF1A', 'score': 550.77}, {'connected_gene': 'LOC105376453', 'score': 7.27}, {'connected_gene': 'ENSG00000252049', 'score': 0.34}]
chr10	GH10I023199	23199972	23200121	0.58	[{'connected_gene': 'PTF1A', 'score': 0.44}, {'connected_gene': 'ENSG00000227537', 'score': 0.22}]
chr10	GH10I023197	23197621	23197912	0.46	[{'connected_gene': 'PTF1A', 'score': 0.44}, {'connected_gene': 'ENSG00000227537', 'score': 0.21}]
chr10	GH10I023188	23188569	23188860	0.31	[{'connected_gene': 'PTF1A', 'score': 0.77}, {'connected_gene': 'ENSG00000252049', 'score': 0.34}]
chr10	GH10I023198	23198411	23198678	0.51	[{'connected_gene': 'PTF1A', 'score': 0.44}, {'connected_gene': 'ENSG00000227537', 'score': 0.22}]
chr10	GH10I023192	23192305	23192364	1.07	[{'connected_gene': 'PTF1A', 'score': 550.77}, {'connected_gene': 'ENSG00000227537', 'score': 0.2}]
chr10	GH10I023193	23192532	23192681	0.85	[{'connected_gene': 'PTF1A', 'score': 550.77}, {'connected_gene': 'ENSG00000227537', 'score': 0.2}]
chr10	GH10I023201	23201909	23202579	0.31	[{'connected_gene': 'LOC105376453', 'score': 5.01}, {'connected_gene': 'PTF1A', 'score': 0.44}, {'connected_gene': 'ENSG00000227537', 'score': 0.22}, {'connected_gene': 'C10orf67', 'score': 0.11}]
chr10	GH10I023205	23205894	23206319	0.4	[{'connected_gene': 'ENSG00000227537', 'score': 11.09}, {'connected_gene': 'BMI1', 'score': 4.99}, {'connected_gene': 'PTF1A', 'score': 0.39}, {'connected_gene': 'C10orf67', 'score': 0.12}]
chr10	GH10I023206	23206495	23206693	0.4	[{'connected_gene': 'ENSG00000227537', 'score': 11.09}, {'connected_gene': 'PTF1A', 'score': 0.39}, {'connected_gene': 'C10orf67', 'score': 0.12}]
chr10	GH10I023279	23279897	23281432	0.75	[{'connected_gene': 'GC10P023291', 'score': 550.77}, {'connected_gene': 'GC10P023289', 'score': 550.77}, {'connected_gene': 'GC10P023281', 'score': 550.77}, {'connected_gene': 'GC10P023282', 'score': 550.77}, {'connected_gene': 'GC10P023280', 'score': 550.77}, {'connected_gene': 'GC10P023283', 'score': 550.77}, {'connected_gene': 'GC10P023285', 'score': 550.77}, {'connected_gene': 'GC10P023292', 'score': 550.77}, {'connected_gene': 'GC10P023279', 'score': 550.77}, {'connected_gene': 'GC10P023284', 'score': 550.77}, {'connected_gene': 'GC10P023290', 'score': 550.77}, {'connected_gene': 'ENSG00000227537', 'score': 12.73}, {'connected_gene': 'PTF1A', 'score': 11.5}, {'connected_gene': 'ENSG00000252049', 'score': 11.15}, {'connected_gene': 'C10orf67', 'score': 7.07}, {'connected_gene': 'GC10P023294', 'score': 0.39}]
chr10	GH10I023173	23173231	23175530	0.62	[{'connected_gene': 'ENSG00000252049', 'score': 0.44}, {'connected_gene': 'PTF1A', 'score': 0.37}]
chr10	GH10I023186	23186266	23187380	1.03	[{'connected_gene': 'ENSG00000227537', 'score': 10.95}, {'connected_gene': 'PTF1A', 'score': 0.44}, {'connected_gene': 'ENSG00000252049', 'score': 0.37}]