PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000328299	[[76540403, 76540569], [76779489, 76779684], [76877692, 76878102], [77093136, 77093244], [77094304, 77100286]]	[[76540551, 76540569], [76779489, 76779684], [76877692, 76878102], [77093136, 77093244], [77094304, 77094491]]
ENST00000464140	[[76779597, 76779684], [76877692, 76878102], [77042530, 77042894]]	None
NM_001160011	[[76540388, 76540569], [76779489, 76779684], [76877692, 76878102], [77042530, 77042894]]	[[76540551, 76540569], [76779489, 76779684], [76877692, 76878102], [77042530, 77042540]]
NM_152996	[[76540388, 76540569], [76779489, 76779684], [76877692, 76878102], [77093136, 77093244], [77094304, 77096669]]	[[76540551, 76540569], [76779489, 76779684], [76877692, 76878102], [77093136, 77093244], [77094304, 77094491]]

Promoter

Chrom	Start	End	Description
chr1	76540386	76540445	CAGE_peak_1_at_ST6GALNAC3_5end
chr1	76540446	76540461	CAGE_peak_3_at_ST6GALNAC3_5end
chr1	76540475	76540526	CAGE_peak_2_at_ST6GALNAC3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I076336	76336571	76338059	0.72	[{'connected_gene': 'RPL17P6', 'score': 9.74}, {'connected_gene': 'LOC100418965', 'score': 0.37}, {'connected_gene': 'GC01M076190', 'score': 0.11}, {'connected_gene': 'ST6GALNAC3', 'score': 0.07}]
chr1	GH01I076267	76267555	76270054	0.72	[{'connected_gene': 'MSH4', 'score': 3.99}, {'connected_gene': 'GC01M076190', 'score': 0.18}, {'connected_gene': 'LOC100418965', 'score': 0.17}, {'connected_gene': 'ST6GALNAC3', 'score': 0.08}]
chr1	GH01I076037	76037069	76039428	0.64	[{'connected_gene': 'ST6GALNAC3', 'score': 23.86}, {'connected_gene': 'LOC101927342', 'score': 6.72}, {'connected_gene': 'ENSG00000230027', 'score': 0.77}, {'connected_gene': 'LOC105378806', 'score': 0.28}]
chr1	GH01I076073	76073978	76077044	2.12	[{'connected_gene': 'ST6GALNAC3', 'score': 557.93}, {'connected_gene': 'LOC101927342', 'score': 4.2}, {'connected_gene': 'GC01P076080', 'score': 0.44}]
chr1	GH01I076052	76052945	76053633	0.52	[{'connected_gene': 'ST6GALNAC3', 'score': 12.76}, {'connected_gene': 'GC01M076064', 'score': 0.39}, {'connected_gene': 'ENSG00000230027', 'score': 0.39}]
chr1	GH01I076124	76124056	76124745	0.43	[{'connected_gene': 'ST6GALNAC3', 'score': 5.57}, {'connected_gene': 'GC01M076098', 'score': 0.31}, {'connected_gene': 'PIR60968', 'score': 0.31}, {'connected_gene': 'GC01P076187', 'score': 0.21}]
chr1	GH01I076074	76073596	76073785	0.43	[{'connected_gene': 'ST6GALNAC3', 'score': 550.77}, {'connected_gene': 'GC01M076064', 'score': 0.44}]
chr1	GH01I076002	76002865	76003019	0.22	[{'connected_gene': 'LOC105378806', 'score': 550.77}, {'connected_gene': 'ST6GALNAC3', 'score': 10.51}, {'connected_gene': 'SLC44A5', 'score': 8.75}, {'connected_gene': 'ASB17', 'score': 8.09}, {'connected_gene': 'MSH4', 'score': 7.37}, {'connected_gene': 'ENSG00000230027', 'score': 0.28}, {'connected_gene': 'LOC101927342', 'score': 0.19}]
chr1	GH01I076090	76090025	76091451	0.49	[{'connected_gene': 'LOC101927342', 'score': 4.58}, {'connected_gene': 'GC01P076093', 'score': 0.77}, {'connected_gene': 'GC01P076083', 'score': 0.44}, {'connected_gene': 'ST6GALNAC3', 'score': 0.37}]
chr1	GH01I076285	76285764	76286004	0.24	[{'connected_gene': 'LOC100418965', 'score': 0.2}, {'connected_gene': 'GC01M076190', 'score': 0.16}, {'connected_gene': 'ST6GALNAC3', 'score': 0.08}]
chr1	GH01I076425	76425583	76426445	0.46	[{'connected_gene': 'GC01M076424', 'score': 550.77}, {'connected_gene': 'ST6GALNAC5', 'score': 4.71}, {'connected_gene': 'GC01P076448', 'score': 0.34}, {'connected_gene': 'ST6GALNAC3', 'score': 0.05}]
chr1	GH01I076040	76040066	76041629	0.62	[{'connected_gene': 'ENSG00000230027', 'score': 550.77}, {'connected_gene': 'ST6GALNAC3', 'score': 24.87}, {'connected_gene': 'LOC101927342', 'score': 6.4}, {'connected_gene': 'ACADM', 'score': 5.25}, {'connected_gene': 'MSH4', 'score': 5.16}, {'connected_gene': 'LOC105378806', 'score': 0.28}]
chr1	GH01I076500	76500968	76503848	0.43	[{'connected_gene': 'GC01P076491', 'score': 0.39}, {'connected_gene': 'GC01M076556', 'score': 0.23}, {'connected_gene': 'ST6GALNAC3', 'score': 0.04}]
chr1	GH01I076511	76511376	76511425	0.38	[{'connected_gene': 'GC01P076491', 'score': 0.34}, {'connected_gene': 'GC01M076556', 'score': 0.25}, {'connected_gene': 'ST6GALNAC3', 'score': 0.05}]
chr1	GH01I076547	76547370	76548593	0.57	[{'connected_gene': 'GC01M076556', 'score': 0.44}, {'connected_gene': 'GC01P076491', 'score': 0.22}, {'connected_gene': 'ST6GALNAC3', 'score': 0.04}]
chr1	GH01I076582	76582776	76583797	0.56	[{'connected_gene': 'GC01P076560', 'score': 0.34}, {'connected_gene': 'ENSG00000272855', 'score': 0.23}, {'connected_gene': 'GC01M076574', 'score': 0.1}, {'connected_gene': 'ST6GALNAC3', 'score': 0.03}]
chr1	GH01I076503	76503896	76504013	0.2	[{'connected_gene': 'GC01P076491', 'score': 0.39}, {'connected_gene': 'GC01M076556', 'score': 0.23}, {'connected_gene': 'ST6GALNAC3', 'score': 0.04}]
chr1	GH01I076153	76153736	76155374	0.96	[{'connected_gene': 'GC01P076187', 'score': 0.29}, {'connected_gene': 'GC01M076098', 'score': 0.22}, {'connected_gene': 'PIR60968', 'score': 0.22}, {'connected_gene': 'ST6GALNAC3', 'score': 0.18}]
chr1	GH01I076465	76465156	76465305	0.2	[{'connected_gene': 'GC01M076460', 'score': 0.77}, {'connected_gene': 'GC01P076448', 'score': 0.37}, {'connected_gene': 'ST6GALNAC3', 'score': 0.05}]
chr1	GH01I076228	76228801	76229600	0.2	[{'connected_gene': 'GC01M076190', 'score': 0.28}, {'connected_gene': 'LOC100418965', 'score': 0.13}, {'connected_gene': 'ST6GALNAC3', 'score': 0.1}]
chr1	GH01I076253	76253622	76255290	0.64	[{'connected_gene': 'GC01M076190', 'score': 0.21}, {'connected_gene': 'LOC100418965', 'score': 0.15}, {'connected_gene': 'ST6GALNAC3', 'score': 0.1}]
chr1	GH01I076219	76219119	76219681	0.31	[{'connected_gene': 'GC01M076190', 'score': 0.31}, {'connected_gene': 'LOC100418965', 'score': 0.12}, {'connected_gene': 'ST6GALNAC3', 'score': 0.11}]
chr1	GH01I076237	76237953	76239193	0.57	[{'connected_gene': 'GC01M076190', 'score': 0.25}, {'connected_gene': 'LOC100418965', 'score': 0.13}, {'connected_gene': 'ST6GALNAC3', 'score': 0.1}]
chr1	GH01I076230	76230777	76232412	0.38	[{'connected_gene': 'GC01M076190', 'score': 0.28}, {'connected_gene': 'LOC100418965', 'score': 0.13}, {'connected_gene': 'ST6GALNAC3', 'score': 0.1}]