PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000537011	[[34635515, 34635903], [34638142, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649929]]	[[34635897, 34635903], [34638142, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649692]]
ENST00000438749	[[34635610, 34635903], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649938]]	[[34635833, 34635903], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649692]]
ENST00000333756	[[34638065, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649933]]	[[34638220, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649692]]
NM_001284293	[[34635515, 34635903], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649938]]	[[34635833, 34635903], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649692]]
NM_001284292	[[34635515, 34635903], [34638142, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649938]]	[[34635897, 34635903], [34638142, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649692]]
NM_175741	[[34635515, 34635903], [34638057, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649938]]	[[34638220, 34638236], [34640169, 34640878], [34642904, 34643033], [34645936, 34646073], [34646646, 34646933], [34647221, 34647338], [34647688, 34649692]]

Promoter

Chrom	Start	End	Description
chr15	34638088	34638129	CAGE_peak_2_at_C15orf55_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I034968	34968526	34970409	2.08	[{'connected_gene': 'AQR', 'score': 576.8}, {'connected_gene': 'GOLGA8A', 'score': 17.34}, {'connected_gene': 'HNRNPLP2', 'score': 14.79}, {'connected_gene': 'GOLGA8B', 'score': 13.65}, {'connected_gene': 'NUTM1', 'score': 12.73}, {'connected_gene': 'ENSG00000259665', 'score': 9.81}, {'connected_gene': 'ENSG00000259336', 'score': 9.73}, {'connected_gene': 'ZNF770', 'score': 7.65}, {'connected_gene': 'GC15P034944', 'score': 0.31}]
chr15	GH15I034303	34303082	34307325	0.54	[{'connected_gene': 'NOP10', 'score': 30.71}, {'connected_gene': 'SLC12A6', 'score': 30.2}, {'connected_gene': 'NUTM1', 'score': 11.88}, {'connected_gene': 'KATNBL1', 'score': 10.7}, {'connected_gene': 'EMC4', 'score': 10.64}, {'connected_gene': 'GC15P034315', 'score': 0.44}, {'connected_gene': 'ENSG00000259468', 'score': 0.25}]
chr15	GH15I034246	34246018	34247411	0.38	[{'connected_gene': 'NOP10', 'score': 51.16}, {'connected_gene': 'SLC12A6', 'score': 11.89}, {'connected_gene': 'NUTM1', 'score': 11.88}, {'connected_gene': 'LPCAT4', 'score': 11.67}, {'connected_gene': 'KATNBL1', 'score': 11.64}, {'connected_gene': 'GOLGA8B', 'score': 4.39}, {'connected_gene': 'ENSG00000259468', 'score': 0.44}, {'connected_gene': 'EMC4', 'score': 0.34}]
chr15	GH15I034238	34238054	34242346	0.89	[{'connected_gene': 'NOP10', 'score': 37.71}, {'connected_gene': 'KATNBL1', 'score': 11.66}, {'connected_gene': 'SLC12A6', 'score': 11.5}, {'connected_gene': 'NUTM1', 'score': 11.5}, {'connected_gene': 'EMC4', 'score': 0.37}, {'connected_gene': 'ENSG00000259468', 'score': 0.37}]
chr15	GH15I034341	34341500	34343809	2.29	[{'connected_gene': 'NOP10', 'score': 632.36}, {'connected_gene': 'NUTM1', 'score': 550.77}, {'connected_gene': 'SLC12A6', 'score': 0.77}]
chr15	GH15I034984	34984590	34989582	2.08	[{'connected_gene': 'ZNF770', 'score': 558.77}, {'connected_gene': 'AQR', 'score': 44.93}, {'connected_gene': 'HNRNPLP2', 'score': 33.38}, {'connected_gene': 'NUTM1', 'score': 10.33}, {'connected_gene': 'ENSG00000279364', 'score': 0.44}]
chr15	GH15I034223	34223673	34226135	2.08	[{'connected_gene': 'EMC4', 'score': 550.77}, {'connected_gene': 'NOP10', 'score': 46.59}, {'connected_gene': 'AQR', 'score': 29.31}, {'connected_gene': 'HNRNPLP2', 'score': 24.12}, {'connected_gene': 'NUTM1', 'score': 21.32}, {'connected_gene': 'SLC12A6', 'score': 11.03}, {'connected_gene': 'KATNBL1', 'score': 4.81}]
chr15	GH15I034346	34346878	34347277	0.23	[{'connected_gene': 'NUTM1', 'score': 0.77}, {'connected_gene': 'LPCAT4', 'score': 0.34}]
chr15	GH15I033984	33984753	33986132	0.84	[{'connected_gene': 'NUTM1', 'score': 21.61}, {'connected_gene': 'CHRM5', 'score': 12.73}, {'connected_gene': 'AVEN', 'score': 11.28}, {'connected_gene': 'ENSG00000259505', 'score': 0.44}, {'connected_gene': 'ENSG00000278472', 'score': 0.39}]
chr15	GH15I034364	34364857	34368885	2.02	[{'connected_gene': 'LPCAT4', 'score': 550.77}, {'connected_gene': 'AQR', 'score': 18.15}, {'connected_gene': 'HNRNPLP2', 'score': 12.55}, {'connected_gene': 'ENSG00000259287', 'score': 11.58}, {'connected_gene': 'GOLGA8B', 'score': 6.7}, {'connected_gene': 'GOLGA8A', 'score': 6.24}, {'connected_gene': 'NUTM1', 'score': 0.34}]
chr15	GH15I034359	34359500	34359689	0.2	[{'connected_gene': 'LPCAT4', 'score': 0.44}, {'connected_gene': 'NUTM1', 'score': 0.37}]
chr15	GH15I034361	34361982	34363807	0.31	[{'connected_gene': 'LPCAT4', 'score': 10.98}, {'connected_gene': 'NUTM1', 'score': 0.37}]
chr15	GH15I034360	34360420	34360609	0.67	[{'connected_gene': 'LPCAT4', 'score': 0.44}, {'connected_gene': 'NUTM1', 'score': 0.37}]
chr15	GH15I034513	34513601	34515800	1.22	[{'connected_gene': 'LOC105370761', 'score': 550.77}, {'connected_gene': 'AQR', 'score': 65.22}, {'connected_gene': 'HNRNPLP2', 'score': 60.18}, {'connected_gene': 'GOLGA8A', 'score': 55.26}, {'connected_gene': 'ENSG00000259287', 'score': 53.56}, {'connected_gene': 'LOC101929988', 'score': 50.63}, {'connected_gene': 'NUTM1', 'score': 38.34}, {'connected_gene': 'FSCN1P1', 'score': 13.83}, {'connected_gene': 'ENSG00000259336', 'score': 11.56}, {'connected_gene': 'GOLGA8B', 'score': 10.8}, {'connected_gene': 'PGBD4', 'score': 10.31}, {'connected_gene': 'PRELID1P4', 'score': 9.94}, {'connected_gene': 'PIR46630', 'score': 0.77}]
chr15	GH15I033971	33971853	33972161	0.59	[{'connected_gene': 'ENSG00000278472', 'score': 550.77}, {'connected_gene': 'CHRM5', 'score': 6.51}, {'connected_gene': 'NUTM1', 'score': 2.54}, {'connected_gene': 'AVEN', 'score': 0.15}]