PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376438	[[85857904, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153461]]	[[85858116, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153146]]
ENST00000304195	[[85859536, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153353]]	[[85862832, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153146]]
ENST00000328788	[[85857904, 85858130], [85862969, 85863431], [85881926, 85882202]]	[[85858116, 85858130], [85862969, 85863431], [85881926, 85882092]]
ENST00000376434	[[85857904, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85946766, 85946876]]	[[85858116, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85946766, 85946780]]
ENST00000465485	[[85862886, 85863431], [85896464, 85896523]]	None
ENST00000431299	[[85912446, 85912731], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926881]]	[[85912685, 85912731], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926881]]
NM_001244959	[[85857904, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153348]]	[[85858116, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153146]]
NM_001244960	[[85859536, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86082532, 86082657]]	[[85862832, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86082532, 86082547]]
NM_174938	[[85859536, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153348]]	[[85862832, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85950430, 85950554], [85958104, 85958202], [85964593, 85964672], [85987827, 85987870], [86004518, 86004623], [86152999, 86153146]]
NM_001244962	[[85857904, 85858130], [85862969, 85863431], [85881926, 85882202]]	[[85858116, 85858130], [85862969, 85863431], [85881926, 85882092]]
NM_001244961	[[85857904, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85946766, 85946876]]	[[85858116, 85858130], [85862969, 85863431], [85905517, 85905642], [85913662, 85913731], [85914026, 85914101], [85924450, 85924539], [85925399, 85925463], [85926801, 85926890], [85928574, 85928662], [85946766, 85946780]]

Promoter

Chrom	Start	End	Description
chr9	85882100	85882106	CAGE_peak_12_at_FRMD3_5end
chr9	85882145	85882188	CAGE_peak_2_at_FRMD3_5end
chr9	85896513	85896541	CAGE_peak_3_at_FRMD3_5end
chr9	86153218	86153343	CAGE_peak_1_at_FRMD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I083508	83508146	83508295	0.64	[{'connected_gene': 'KIF27', 'score': 4.71}, {'connected_gene': 'HNRNPK', 'score': 1.74}, {'connected_gene': 'UBQLN1', 'score': 1.26}, {'connected_gene': 'PIR58953', 'score': 0.77}, {'connected_gene': 'GC09M083513', 'score': 0.77}, {'connected_gene': 'FRMD3', 'score': 0.29}, {'connected_gene': 'GC09M083455', 'score': 0.21}]
chr9	GH09I083544	83544201	83544401	0.59	[{'connected_gene': 'IDNK', 'score': 9.77}, {'connected_gene': 'FRMD3', 'score': 0.44}, {'connected_gene': 'LOC105376113', 'score': 0.26}]
chr9	GH09I083545	83544446	83544615	0.69	[{'connected_gene': 'IDNK', 'score': 9.77}, {'connected_gene': 'FRMD3', 'score': 0.44}, {'connected_gene': 'LOC105376113', 'score': 0.26}]
chr9	GH09I083334	83334346	83334515	0.79	[{'connected_gene': 'IDNK', 'score': 10.6}, {'connected_gene': 'ENSG00000237529', 'score': 0.22}, {'connected_gene': 'GC09M083455', 'score': 0.14}, {'connected_gene': 'FRMD3', 'score': 0.08}]
chr9	GH09I083271	83271096	83272303	0.57	[{'connected_gene': 'FRMD3', 'score': 5.28}, {'connected_gene': 'C9orf64', 'score': 5.21}, {'connected_gene': 'GC09P083268', 'score': 0.77}, {'connected_gene': 'RNU4-29P', 'score': 0.77}]
chr9	GH09I083500	83500316	83507325	0.49	[{'connected_gene': 'FRMD3', 'score': 16.79}, {'connected_gene': 'IDNK', 'score': 9.39}, {'connected_gene': 'PIR58953', 'score': 0.44}, {'connected_gene': 'GC09M083513', 'score': 0.44}, {'connected_gene': 'GC09M083455', 'score': 0.22}]
chr9	GH09I083470	83470602	83474644	1.09	[{'connected_gene': 'FRMD3', 'score': 17.41}, {'connected_gene': 'GC09M083455', 'score': 0.31}, {'connected_gene': 'PIR58953', 'score': 0.28}, {'connected_gene': 'GC09M083513', 'score': 0.28}]
chr9	GH09I083354	83354914	83355431	0.38	[{'connected_gene': 'FRMD3', 'score': 6.88}, {'connected_gene': 'ENSG00000237529', 'score': 0.18}, {'connected_gene': 'GC09M083455', 'score': 0.16}]
chr9	GH09I083467	83467726	83467785	0.5	[{'connected_gene': 'FRMD3', 'score': 550.19}, {'connected_gene': 'GC09M083455', 'score': 0.34}, {'connected_gene': 'PIR58953', 'score': 0.26}, {'connected_gene': 'GC09M083513', 'score': 0.26}]
chr9	GH09I083284	83284505	83287161	0.2	[{'connected_gene': 'FRMD3', 'score': 4.35}, {'connected_gene': 'ENSG00000237529', 'score': 0.44}, {'connected_gene': 'GC09M083455', 'score': 0.1}]
chr9	GH09I083280	83280402	83282322	0.76	[{'connected_gene': 'FRMD3', 'score': 6.2}, {'connected_gene': 'ENSG00000237529', 'score': 0.77}, {'connected_gene': 'GC09M083455', 'score': 0.1}]
chr9	GH09I083537	83537600	83539335	2.12	[{'connected_gene': 'FRMD3', 'score': 550.77}, {'connected_gene': 'PIR58953', 'score': 0.31}, {'connected_gene': 'GC09M083513', 'score': 0.31}]
chr9	GH09I083527	83527006	83527155	0.92	[{'connected_gene': 'FRMD3', 'score': 5.53}, {'connected_gene': 'PIR58953', 'score': 0.39}, {'connected_gene': 'GC09M083513', 'score': 0.39}]
chr9	GH09I083509	83509116	83510052	0.4	[{'connected_gene': 'FRMD3', 'score': 5.45}, {'connected_gene': 'PIR58953', 'score': 0.77}, {'connected_gene': 'GC09M083513', 'score': 0.77}, {'connected_gene': 'GC09M083455', 'score': 0.21}]
chr9	GH09I083441	83441466	83441595	0.2	[{'connected_gene': 'FRMD3', 'score': 19.7}, {'connected_gene': 'GC09M083455', 'score': 0.77}, {'connected_gene': 'ENSG00000237529', 'score': 0.1}]
chr9	GH09I083570	83570014	83571385	0.43	[{'connected_gene': 'LOC105376113', 'score': 0.37}, {'connected_gene': 'FRMD3', 'score': 0.29}]
chr9	GH09I083266	83266129	83268177	1.41	[{'connected_gene': 'GC09P083268', 'score': 550.77}, {'connected_gene': 'FRMD3', 'score': 550.06}, {'connected_gene': 'LOC102723989', 'score': 0.25}, {'connected_gene': 'ENSG00000229109', 'score': 0.25}]
chr9	GH09I083392	83392366	83392515	0.2	[{'connected_gene': 'GC09M083455', 'score': 0.23}, {'connected_gene': 'ENSG00000237529', 'score': 0.13}, {'connected_gene': 'FRMD3', 'score': 0.11}]
chr9	GH09I083469	83469926	83470015	0.2	[{'connected_gene': 'GC09M083455', 'score': 0.34}, {'connected_gene': 'PIR58953', 'score': 0.26}, {'connected_gene': 'GC09M083513', 'score': 0.26}, {'connected_gene': 'FRMD3', 'score': 0.2}]
chr9	GH09I083510	83510756	83511962	0.85	[{'connected_gene': 'PIR58953', 'score': 550.77}, {'connected_gene': 'GC09M083513', 'score': 550.77}, {'connected_gene': 'FRMD3', 'score': 0.31}, {'connected_gene': 'GC09M083455', 'score': 0.2}]
chr9	GH09I083299	83299275	83300400	0.72	[{'connected_gene': 'ENSG00000237529', 'score': 0.34}, {'connected_gene': 'GC09M083455', 'score': 0.11}, {'connected_gene': 'FRMD3', 'score': 0.07}]
chr9	GH09I083304	83304441	83305535	0.69	[{'connected_gene': 'ENSG00000237529', 'score': 0.31}, {'connected_gene': 'GC09M083455', 'score': 0.11}, {'connected_gene': 'FRMD3', 'score': 0.07}]
chr9	GH09I083448	83448293	83449647	0.43	[{'connected_gene': 'GC09M083455', 'score': 0.77}, {'connected_gene': 'PIR58953', 'score': 0.21}, {'connected_gene': 'GC09M083513', 'score': 0.21}, {'connected_gene': 'FRMD3', 'score': 0.17}]
chr9	GH09I083433	83433801	83434000	0.31	[{'connected_gene': 'GC09M083455', 'score': 0.39}, {'connected_gene': 'FRMD3', 'score': 0.15}, {'connected_gene': 'ENSG00000237529', 'score': 0.1}]
chr9	GH09I083306	83306770	83307484	0.4	[{'connected_gene': 'ENSG00000237529', 'score': 0.29}, {'connected_gene': 'GC09M083455', 'score': 0.12}, {'connected_gene': 'FRMD3', 'score': 0.07}]
chr9	GH09I083327	83327426	83327595	0.43	[{'connected_gene': 'ENSG00000237529', 'score': 0.23}, {'connected_gene': 'GC09M083455', 'score': 0.13}, {'connected_gene': 'FRMD3', 'score': 0.08}]
chr9	GH09I083520	83520818	83522090	0.51	[{'connected_gene': 'PIR58953', 'score': 0.44}, {'connected_gene': 'GC09M083513', 'score': 0.44}, {'connected_gene': 'FRMD3', 'score': 0.37}]
chr9	GH09I083431	83431557	83432895	1.04	[{'connected_gene': 'GC09M083455', 'score': 0.39}, {'connected_gene': 'FRMD3', 'score': 0.14}, {'connected_gene': 'ENSG00000237529', 'score': 0.1}]
chr9	GH09I083512	83512449	83513492	0.2	[{'connected_gene': 'PIR58953', 'score': 550.77}, {'connected_gene': 'GC09M083513', 'score': 550.77}, {'connected_gene': 'FRMD3', 'score': 5.49}]
chr9	GH09I083403	83403986	83404135	0.2	[{'connected_gene': 'GC09M083455', 'score': 0.26}, {'connected_gene': 'ENSG00000237529', 'score': 0.13}, {'connected_gene': 'FRMD3', 'score': 0.12}]
chr9	GH09I083219	83219000	83222074	1.31	[{'connected_gene': 'ENSG00000229109', 'score': 556.01}, {'connected_gene': 'LOC102723989', 'score': 550.77}, {'connected_gene': 'FRMD3', 'score': 6.48}, {'connected_gene': 'GC09P083268', 'score': 0.25}]