PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375533	[[28966270, 28966902], [28970186, 28970474], [28970911, 28971868]]	[[28966826, 28966902], [28970186, 28970474], [28970911, 28971330]]
ENST00000497699	[[28966438, 28966902], [28970186, 28971606]]	None
NM_012342	[[28966423, 28966902], [28970186, 28970474], [28970911, 28971868]]	[[28966826, 28966902], [28970186, 28970474], [28970911, 28971330]]

Promoter

Chrom	Start	End	Description
chr10	28966416	28966437	CAGE_peak_2_at_BAMBI_5end
chr10	28966443	28966461	CAGE_peak_1_at_BAMBI_5end
chr10	28966758	28966768	CAGE_peak_4_at_BAMBI_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I029594	29594520	29597542	0.43	[{'connected_gene': 'MIR604', 'score': 10.77}, {'connected_gene': 'RNU6-908P', 'score': 10.17}, {'connected_gene': 'SVIL', 'score': 10.01}, {'connected_gene': 'BAMBI', 'score': 4.85}, {'connected_gene': 'MIR938', 'score': 0.44}, {'connected_gene': 'ENSG00000212411', 'score': 0.34}]
chr10	GH10I028822	28822411	28823942	1.12	[{'connected_gene': 'C10orf126', 'score': 11.85}, {'connected_gene': 'BAMBI', 'score': 10.68}, {'connected_gene': 'RNU6-270P', 'score': 10.59}, {'connected_gene': 'ENSG00000271220', 'score': 7.85}, {'connected_gene': 'GC10M030003', 'score': 0.37}]
chr10	GH10I028087	28087643	28090986	0.9	[{'connected_gene': 'BAMBI', 'score': 5.1}, {'connected_gene': 'MASTL', 'score': 4.11}, {'connected_gene': 'MRPS21P5', 'score': 0.18}, {'connected_gene': 'MIR8086', 'score': 0.08}, {'connected_gene': 'MPP7', 'score': 0.07}]
chr10	GH10I028895	28895106	28895423	0.22	[{'connected_gene': 'BAMBI', 'score': 1.43}, {'connected_gene': 'RPL21P93', 'score': 0.77}, {'connected_gene': 'GC10M029999', 'score': 0.44}, {'connected_gene': 'RNA5SP308', 'score': 0.34}, {'connected_gene': 'GC10M029847', 'score': 0.34}]
chr10	GH10I028675	28675661	28682961	2.07	[{'connected_gene': 'BAMBI', 'score': 558.21}, {'connected_gene': 'WAC-AS1', 'score': 19.26}, {'connected_gene': 'RNU6-270P', 'score': 10.65}, {'connected_gene': 'LYZL1', 'score': 9.77}, {'connected_gene': 'WAC', 'score': 5.03}, {'connected_gene': 'LOC105376470', 'score': 0.31}]
chr10	GH10I028684	28684279	28685228	0.75	[{'connected_gene': 'BAMBI', 'score': 0.44}, {'connected_gene': 'LOC105376470', 'score': 0.34}]
chr10	GH10I028984	28984202	28984894	1.08	[{'connected_gene': 'BAMBI', 'score': 6.63}, {'connected_gene': 'GC10M029997', 'score': 0.37}, {'connected_gene': 'GC10M029999', 'score': 0.18}]
chr10	GH10I028975	28975605	28976654	0.64	[{'connected_gene': 'BAMBI', 'score': 6.67}, {'connected_gene': 'GC10M029997', 'score': 0.31}, {'connected_gene': 'GC10M029999', 'score': 0.19}]
chr10	GH10I028531	28531208	28535204	2.27	[{'connected_gene': 'WAC-AS1', 'score': 595.79}, {'connected_gene': 'WAC', 'score': 559.49}, {'connected_gene': 'BAMBI', 'score': 5.42}, {'connected_gene': 'PIR60646', 'score': 0.17}]
chr10	GH10I028518	28518940	28519378	0.43	[{'connected_gene': 'WAC-AS1', 'score': 54.29}, {'connected_gene': 'BAMBI', 'score': 6.43}, {'connected_gene': 'GC10M028522', 'score': 0.77}, {'connected_gene': 'GC10P028507', 'score': 0.39}]
chr10	GH10I028660	28660888	28661798	0.54	[{'connected_gene': 'WAC-AS1', 'score': 9.99}, {'connected_gene': 'BAMBI', 'score': 6.71}, {'connected_gene': 'GC10P028658', 'score': 0.77}, {'connected_gene': 'GC10P028668', 'score': 0.44}]
chr10	GH10I028704	28704290	28705352	0.31	[{'connected_gene': 'WAC-AS1', 'score': 18.25}, {'connected_gene': 'RNU6-270P', 'score': 11.15}, {'connected_gene': 'LYZL1', 'score': 10.08}, {'connected_gene': 'LOC105376470', 'score': 0.77}, {'connected_gene': 'BAMBI', 'score': 0.31}]
chr10	GH10I028685	28685272	28688105	0.8	[{'connected_gene': 'WAC-AS1', 'score': 18.51}, {'connected_gene': 'RNU6-270P', 'score': 11.1}, {'connected_gene': 'BAMBI', 'score': 0.44}, {'connected_gene': 'LOC105376470', 'score': 0.34}]
chr10	GH10I028905	28905945	28907503	0.84	[{'connected_gene': 'RNU6-270P', 'score': 10.36}, {'connected_gene': 'BAMBI', 'score': 1.99}, {'connected_gene': 'GC10M029999', 'score': 0.77}, {'connected_gene': 'GC10M029997', 'score': 0.15}]
chr10	GH10I028809	28809656	28811529	1.24	[{'connected_gene': 'ENSG00000271220', 'score': 27.5}, {'connected_gene': 'BAMBI', 'score': 13.22}, {'connected_gene': 'C10orf126', 'score': 11.72}, {'connected_gene': 'RNU6-270P', 'score': 11.34}, {'connected_gene': 'LYZL1', 'score': 10.22}, {'connected_gene': 'GC10M030003', 'score': 0.31}, {'connected_gene': 'PIRC48', 'score': 0.26}]
chr10	GH10I028805	28805883	28809504	1.36	[{'connected_gene': 'ENSG00000271220', 'score': 577.43}, {'connected_gene': 'BAMBI', 'score': 13.54}, {'connected_gene': 'RNU6-270P', 'score': 11.45}, {'connected_gene': 'C10orf126', 'score': 11.43}, {'connected_gene': 'LINC01517', 'score': 5.08}, {'connected_gene': 'GC10M030003', 'score': 0.29}, {'connected_gene': 'PIRC48', 'score': 0.28}]
chr10	GH10I028668	28668246	28669647	1.3	[{'connected_gene': 'GC10P028668', 'score': 550.77}, {'connected_gene': 'RNU6-1067P', 'score': 550.77}, {'connected_gene': 'WAC-AS1', 'score': 10.16}, {'connected_gene': 'BAMBI', 'score': 3.05}]
chr10	GH10I028800	28800204	28800848	0.31	[{'connected_gene': 'PIR51335', 'score': 550.77}, {'connected_gene': 'RNU6-270P', 'score': 11.37}, {'connected_gene': 'C10orf126', 'score': 10.99}, {'connected_gene': 'BAMBI', 'score': 7.15}, {'connected_gene': 'LINC00837', 'score': 0.77}, {'connected_gene': 'PIRC48', 'score': 0.29}, {'connected_gene': 'LINC01517', 'score': 0.22}]